Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 0.0e+00 1354.3 674 100.0
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 1.9e-303 1045.4 672 76.8
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 7.6e-289 996.9 673 73.8
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 1.1e-287 993.0 672 72.9
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 2.1e-270 935.6 677 67.9
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 4.5e-257 891.3 652 69.6
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 4.5e-257 891.3 673 66.0
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 1.1e-255 886.7 659 66.2
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 2.5e-255 885.6 616 69.5
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 1.0e-253 880.2 674 64.2
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 6.7e-253 877.5 660 65.5
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 1.5e-252 876.3 666 65.3
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 5.7e-252 874.4 666 64.9
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 2.2e-251 872.5 640 66.6
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 2.8e-251 872.1 670 65.4
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 2.8e-251 872.1 672 63.8
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 1.0e-248 863.6 677 63.4
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 4.3e-244 848.2 666 63.7
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 1.8e-242 842.8 656 63.0
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 4.1e-242 841.6 653 64.6
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 2.6e-241 839.0 665 63.0
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.7e-240 836.3 670 62.2
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 1.1e-239 833.6 667 62.4
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 1.9e-239 832.8 652 63.2
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 2.5e-239 832.4 667 62.5
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 2.1e-238 829.3 670 61.8
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 1.8e-237 826.2 650 62.3
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 5.1e-237 824.7 664 61.0
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 4.8e-235 818.1 666 62.0
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 1.4e-234 816.6 665 59.7
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 3.1e-234 815.5 649 63.0
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 9.1e-234 813.9 662 61.8
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 2.0e-233 812.8 673 61.2
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 4.5e-233 811.6 663 61.7
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 4.5e-233 811.6 661 61.7
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 1.7e-232 809.7 664 61.7
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 1.4e-231 806.6 662 61.3
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 2.5e-231 805.8 669 61.6
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 6.1e-230 801.2 672 60.0
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 6.1e-230 801.2 661 59.3
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 1.0e-229 800.4 663 61.2
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 1.5e-228 796.6 679 59.8
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 2.0e-228 796.2 644 62.4
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 2.6e-228 795.8 665 60.0
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 5.7e-228 794.7 667 61.3
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 1.8e-226 789.6 668 60.6
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 5.3e-226 788.1 663 60.2
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 5.3e-226 788.1 651 61.6
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 4.5e-225 785.0 698 56.0
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 4.5e-225 785.0 657 60.1
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 4.5e-225 785.0 661 60.4
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 1.7e-224 783.1 666 59.5
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 1.9e-223 779.6 681 58.7
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 4.2e-223 778.5 739 56.7
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 1.2e-222 776.9 654 60.1
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 1.4e-221 773.5 667 57.6
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 1.8e-221 773.1 665 58.5
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 1.2e-220 770.4 647 59.8
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 7.5e-220 767.7 673 58.2
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.7e-219 766.5 748 52.0
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 4.8e-219 765.0 668 58.7
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 3.1e-218 762.3 677 57.5
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 7.0e-218 761.1 705 57.3
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 1.2e-214 750.4 635 59.4
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 4.1e-210 735.3 692 54.8
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 1.7e-208 729.9 682 54.1
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 6.5e-208 728.0 677 54.7
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 1.1e-207 727.2 670 54.9
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 1.6e-206 723.4 679 54.9
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 1.0e-205 720.7 685 54.9
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 2.3e-205 719.5 689 54.1
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 2.3e-205 719.5 508 69.5
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 6.8e-205 718.0 686 53.6
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 1.2e-204 717.2 689 54.1
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 4.4e-204 715.3 687 53.7
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 1.3e-203 713.8 534 66.3
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 1.7e-203 713.4 684 52.9
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 2.8e-203 712.6 687 53.6
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 4.9e-203 711.8 654 56.9
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 2.6e-196 689.5 658 54.1
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 2.9e-195 686.0 666 52.7
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 1.9e-194 683.3 668 54.0
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 5.4e-194 681.8 659 55.2
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 9.5e-191 671.0 473 71.5
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 3.6e-190 669.1 515 64.7
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 7.5e-188 661.4 678 53.8
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 2.2e-187 659.8 660 52.6
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 4.1e-186 655.6 652 52.3
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 2.6e-180 636.3 654 52.3
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 3.0e-176 622.9 654 50.8
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 2.7e-169 599.7 537 58.5
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 3.5e-169 599.4 669 47.2
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 1.2e-166 590.9 649 49.6
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 6.4e-155 552.0 534 55.6
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 7.1e-138 495.4 649 43.8
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 2.7e-129 466.8 407 58.2
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 7.2e-122 442.2 646 38.4
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 2.5e-114 417.2 655 38.8
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 1.2e-100 371.7 397 51.9
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 2.6e-87 327.4 241 64.7
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 7.5e-79 299.3 459 40.3
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.0e-75 288.9 533 36.4
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 4.1e-69 266.9 624 32.7
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 6.2e-49 199.9 146 65.8
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.5e-47 195.3 230 42.6
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 8.4e-46 189.5 233 42.5
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 3.4e-39 167.5 413 32.4
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 8.7e-35 152.9 99 73.7
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 3.1e-32 144.4 87 80.5
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.6e-28 132.1 237 34.6
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 1.3e-27 129.0 92 60.9
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 1.4e-24 119.0 163 48.5
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 7.1e-21 106.7 95 57.9
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 1.6e-20 105.5 114 47.4
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 1.2e-12 79.3 90 48.9
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 1.6e-12 79.0 74 54.1
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 5.1e-11 73.9 94 42.6
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 6.7e-11 73.6 87 46.0
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 1.5e-10 72.4 64 53.1


User provided reference genes

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