Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D02211 Erythranthe guttata HOM05D000055 ORTHO05D003892 3.6e-79 298.1 144 100.0
MSTRG.21130 Avicennia marina HOM05D000055 ORTHO05D003892 1.5e-45 186.4 125 75.2
CSS0032288 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D003892 5.4e-43 177.9 125 68.8
SalBow3G2078 Salvia bowleyana HOM05D000055 ORTHO05D003892 5.4e-43 177.9 125 72.0
Dinv32758 Davidia involucrata HOM05D000055 ORTHO05D003892 6.0e-42 174.5 125 68.8
Nitab4.5_0000181g0050 Nicotiana tabacum HOM05D000055 ORTHO05D003892 1.0e-41 173.7 125 69.6
SalBow3G0288 Salvia bowleyana HOM05D000055 ORTHO05D003892 5.0e-41 171.4 125 67.2
Nitab4.5_0011503g0020 Nicotiana tabacum HOM05D000055 ORTHO05D003892 2.5e-40 169.1 125 68.0
MSTRG.17813 Avicennia marina HOM05D000055 ORTHO05D003892 1.2e-39 166.8 129 64.3
Cc01_g11240 Coffea canephora HOM05D000055 ORTHO05D003892 2.8e-39 165.6 125 66.4
Actinidia03736 Actinidia chinensis HOM05D000055 ORTHO05D003892 6.2e-39 164.5 125 66.4
Actinidia07130 Actinidia chinensis HOM05D000055 ORTHO05D003892 1.4e-38 163.3 125 67.2
PGSC0003DMG400008108 Solanum tuberosum HOM05D000055 ORTHO05D003892 1.4e-38 163.3 125 67.2
Oeu002458.1 Olea europaea HOM05D000055 ORTHO05D003892 3.1e-38 162.2 125 68.0
Rhsim13G0093800 Rhododendron simsii HOM05D000055 ORTHO05D003892 1.2e-37 160.2 125 67.2
Solyc11g069300.2 Solanum lycopersicum HOM05D000055 ORTHO05D003892 3.4e-37 158.7 125 64.8
Sopen11g028030 Solanum pennellii HOM05D000055 ORTHO05D003892 3.4e-37 158.7 125 64.8
Nitab4.5_0003701g0050 Nicotiana tabacum HOM05D000055 ORTHO05D003892 9.9e-37 157.1 125 64.0
SGA_v2.0_scaffold97G29216 Striga asiatica HOM05D000055 ORTHO05D003892 1.3e-36 156.8 131 67.2
vmacro03192 Vaccinium macrocarpon HOM05D000055 ORTHO05D003892 1.3e-36 156.8 157 54.8
Nitab4.5_0000650g0130 Nicotiana tabacum HOM05D000055 ORTHO05D003892 8.3e-36 154.1 125 63.2
FAN21G3773 Fragaria x ananassa HOM05D000055 ORTHO05D003892 1.9e-35 152.9 129 60.5
Cfa011330 Carpinus fangiana HOM05D000055 ORTHO05D003892 2.4e-35 152.5 126 61.1
RcHm_v2.0_Chr5g0059631 Rosa chinensis HOM05D000055 ORTHO05D003892 2.4e-35 152.5 125 63.2
Hma1.2p1_1031F.1_g249950 Hydrangea macrophylla HOM05D000055 ORTHO05D003892 3.2e-35 152.1 125 61.6
CiPaw.13G112000 Carya illinoinensis HOM05D000055 ORTHO05D003892 5.4e-35 151.4 125 59.2
FAN11G2098 Fragaria x ananassa HOM05D000055 ORTHO05D003892 5.4e-35 151.4 129 60.5
FAN16G0066 Fragaria x ananassa HOM05D000055 ORTHO05D003892 5.4e-35 151.4 129 60.5
FvH4_3g32550 Fragaria vesca HOM05D000055 ORTHO05D003892 1.6e-34 149.8 125 60.8
FAN25G2930 Fragaria x ananassa HOM05D000055 ORTHO05D003892 1.6e-34 149.8 125 60.8
Rhsim01G0217700 Rhododendron simsii HOM05D000055 ORTHO05D003892 2.1e-34 149.4 125 61.6
QL01p022404 Quercus lobata HOM05D000055 ORTHO05D003892 4.6e-34 148.3 125 61.6
Nn2g10768 Nelumbo nucifera HOM05D000055 ORTHO05D003892 7.8e-34 147.5 125 60.0
CAN.G631.17 Capsicum annuum HOM05D000055 ORTHO05D003892 1.7e-33 146.4 125 60.8
Lj1C190G12 Lonicera japonica HOM05D000055 ORTHO05D003892 2.3e-33 146.0 127 60.6
ECA233G4401 Erigeron canadensis HOM05D000055 ORTHO05D003892 3.0e-33 145.6 137 59.1
HanXRQChr02g0055721 Helianthus annuus HOM05D000055 ORTHO05D003892 1.1e-32 143.7 129 59.7
DCAR_006057 Daucus carota HOM05D000055 ORTHO05D003892 1.5e-32 143.3 131 60.3
PGR102G0854 Punica granatum HOM05D000055 ORTHO05D003892 1.9e-32 142.9 129 62.0
Thecc.09G257000 Theobroma cacao HOM05D000055 ORTHO05D003892 1.9e-32 142.9 125 59.2
Eucgr.B02491 Eucalyptus grandis HOM05D000055 ORTHO05D003892 4.3e-32 141.7 127 58.3
Sc06g0006930 Simmondsia chinensis HOM05D000055 ORTHO05D003892 9.5e-32 140.6 137 56.2
TWI79G0113 Tripterygium wilfordii HOM05D000055 ORTHO05D003892 2.8e-31 139.0 129 58.1
Gorai.009G078200 Gossypium raimondii HOM05D000055 ORTHO05D003892 3.6e-31 138.7 125 56.8
Manes.11G144200 Manihot esculenta HOM05D000055 ORTHO05D003892 3.6e-31 138.7 125 58.4
TAR636G2561 Trochodendron aralioides HOM05D000055 ORTHO05D003892 4.7e-31 138.3 125 60.0
Prupe.6G100200 Prunus persica HOM05D000055 ORTHO05D003892 8.1e-31 137.5 125 60.0
Gohir.A05G073900 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.4e-30 136.7 125 56.0
MD11G1134400 Malus domestica HOM05D000055 ORTHO05D003892 1.4e-30 136.7 125 60.8
Duzib150G1261 Durio zibethinus HOM05D000055 ORTHO05D003892 3.1e-30 135.6 125 59.2
Duzib168G0484 Durio zibethinus HOM05D000055 ORTHO05D003892 1.2e-29 133.7 125 56.8
Lsat_1_v5_gn_6_46181 Lactuca sativa HOM05D000055 ORTHO05D003892 2.0e-29 132.9 136 54.4
TAR623G1161 Trochodendron aralioides HOM05D000055 ORTHO05D003892 3.4e-29 132.1 125 60.0
Cpa.g.sc216.16 Carica papaya HOM05D000055 ORTHO05D003892 4.4e-29 131.7 125 55.2
MELO3C025767.2 Cucumis melo HOM05D000055 ORTHO05D003892 4.4e-29 131.7 125 58.4
Haze_23862 Corylus avellana HOM05D000055 ORTHO05D003892 5.8e-29 131.3 154 47.4
CsaV3_6G013850 Cucumis sativus L. HOM05D000055 ORTHO05D003892 5.8e-29 131.3 125 58.4
TWI31G1287 Tripterygium wilfordii HOM05D000055 ORTHO05D003892 5.8e-29 131.3 129 56.6
Atru.chr3.3642 Acer truncatum HOM05D000055 ORTHO05D003892 7.6e-29 131.0 125 56.0
ClCG02G021100 Citrullus lanatus HOM05D000055 ORTHO05D003892 2.2e-28 129.4 125 56.8
DCAR_015541 Daucus carota HOM05D000055 ORTHO05D003892 2.9e-28 129.0 108 63.0
Glyma.12G068500 Glycine max HOM05D000055 ORTHO05D003892 2.9e-28 129.0 125 54.4
Phvul.011G078300 Phaseolus vulgaris HOM05D000055 ORTHO05D003892 3.8e-28 128.6 127 52.8
ECA248G2155 Erigeron canadensis HOM05D000055 ORTHO05D003892 8.4e-28 127.5 129 53.5
Ca_05252_v3 Cicer arietinum L. HOM05D000055 ORTHO05D003892 1.1e-27 127.1 124 50.8
Ciclev10028546m.g Citrus clementina HOM05D000055 ORTHO05D003892 1.1e-27 127.1 125 52.8
Lsat_1_v5_gn_1_65461 Lactuca sativa HOM05D000055 ORTHO05D003892 1.4e-27 126.7 133 54.1
CiPaw.14G079900 Carya illinoinensis HOM05D000055 ORTHO05D003892 1.9e-27 126.3 129 53.5
Peaxi162Scf00270g00098 Petunia axillaris HOM05D000055 ORTHO05D003892 1.9e-27 126.3 119 59.7
TAR633G0710 Trochodendron aralioides HOM05D000055 ORTHO05D003892 1.9e-27 126.3 125 57.6
vmacro14443 Vaccinium macrocarpon HOM05D000055 ORTHO05D003892 2.4e-27 125.9 153 47.1
arahy.Tifrunner.gnm1.ann1.E1CD9Y Arachis hypogaea HOM05D000055 ORTHO05D003892 5.4e-27 124.8 126 51.6
arahy.Tifrunner.gnm1.ann1.E5GBGH Arachis hypogaea HOM05D000055 ORTHO05D003892 5.4e-27 124.8 126 50.8
VMungo1127G1522 Vigna mungo HOM05D000055 ORTHO05D003892 7.1e-27 124.4 127 52.0
Glyma.11G147500 Glycine max HOM05D000055 ORTHO05D003892 1.2e-26 123.6 126 51.6
Oeu025527.2 Olea europaea HOM05D000055 ORTHO05D003892 2.1e-26 122.9 99 63.6
Sed0006682 Sechium edule HOM05D000614 ORTHO05D003892 4.6e-26 121.7 125 55.2
unitig_747.g22000 Utricularia gibba HOM05D000055 ORTHO05D003892 4.6e-26 121.7 110 63.6
Glyma.13G326900 Glycine max HOM05D000055 ORTHO05D003892 5.1e-25 118.2 125 51.2
HanXRQChr01g0018391 Helianthus annuus HOM05D000055 ORTHO05D003892 5.1e-25 118.2 133 51.1
Manes.04G022100 Manihot esculenta HOM05D000055 ORTHO05D003892 6.6e-25 117.9 125 52.8
Glyma.12G173600 Glycine max HOM05D000055 ORTHO05D003892 1.9e-24 116.3 125 50.4
MBI07_g19318_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D003892 1.9e-24 116.3 124 54.8
PSO339G3375 Papaver somniferum HOM05D000055 ORTHO05D003892 3.3e-24 115.5 125 52.0
PSO384G4136 Papaver somniferum HOM05D000055 ORTHO05D003892 3.3e-24 115.5 125 52.0
Medtr4g059560 Medicago truncatula HOM05D000055 ORTHO05D003892 4.3e-24 115.2 123 49.6
Gohir.A08G008700 Gossypium hirsutum HOM05D000055 ORTHO05D003892 5.6e-24 114.8 127 48.8
Sabra04G0142300 Salix brachista HOM05D000055 ORTHO05D003892 5.6e-24 114.8 142 50.7
CANSAT54G2619 Cannabis sativa HOM05D000055 ORTHO05D003892 1.2e-23 113.6 126 51.6
Hund05740 Selenicereus undatus HOM05D000055 ORTHO05D003892 1.2e-23 113.6 131 48.9
Gohir.D07G122200 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.6e-23 113.2 124 52.4
Gohir.A07G117900 Gossypium hirsutum HOM05D000055 ORTHO05D003892 6.2e-23 111.3 124 51.6
VMungo1080G1375 Vigna mungo HOM05D000055 ORTHO05D003892 8.1e-23 110.9 125 46.4
Gorai.001G132000 Gossypium raimondii HOM05D000055 ORTHO05D003892 1.1e-22 110.5 124 51.6
Lalb_Chr19g0137341 Lupinus albus HOM05D000055 ORTHO05D003892 2.4e-22 109.4 125 48.8
THA.LOC104810850 Tarenaya hassleriana HOM05D000055 ORTHO05D003892 2.4e-22 109.4 113 53.1
Ca_01420_v3 Cicer arietinum L. HOM05D000055 ORTHO05D003892 6.9e-22 107.8 125 48.0
Sabra09G0008400 Salix brachista HOM05D000055 ORTHO05D003892 9.0e-22 107.5 137 48.9
Gohir.D08G018700 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.2e-21 107.1 126 47.6
Gorai.004G013200 Gossypium raimondii HOM05D000055 ORTHO05D003892 1.2e-21 107.1 126 47.6
Phvul.005G135922 Phaseolus vulgaris HOM05D000055 ORTHO05D003892 1.5e-21 106.7 125 46.4
Medtr2g094090 Medicago truncatula HOM05D000055 ORTHO05D003892 2.0e-21 106.3 125 48.8
TPR.G15553 Trifolium pratense HOM05D000055 ORTHO05D003892 5.8e-21 104.8 121 48.8
PSO063G7525 Papaver somniferum HOM05D000055 ORTHO05D003892 7.6e-21 104.4 125 54.4
Potri.009G012900 Populus trichocarpa HOM05D000055 ORTHO05D003892 9.9e-21 104.0 138 47.8
THA.LOC104799499 Tarenaya hassleriana HOM05D000055 ORTHO05D003892 9.9e-21 104.0 129 47.3
Lalb_Chr01g0004251 Lupinus albus HOM05D000055 ORTHO05D003892 1.7e-20 103.2 124 45.2
EL10Ac7g16406 Beta vulgaris HOM05D000055 ORTHO05D003892 2.2e-20 102.8 135 45.9
PSO339G0350 Papaver somniferum HOM05D000055 ORTHO05D003892 2.2e-20 102.8 125 53.6
Aqoxy1G01251 Aquilegia oxysepala HOM05D000055 ORTHO05D003892 2.9e-20 102.4 125 48.0
CDE07G1595 Ceratophyllum demersum HOM05D000055 ORTHO05D003892 8.4e-20 100.9 125 49.6
CARHR150700 Cardamine hirsuta HOM05D000055 ORTHO05D003892 1.9e-19 99.8 125 48.8
Lalb_Chr22g0350221 Lupinus albus HOM05D000055 ORTHO05D003892 2.4e-19 99.4 86 57.0
A10p17740 Brassica napus HOM05D000055 ORTHO05D003892 7.1e-19 97.8 130 48.5
BraA10t43852Z Brassica rapa HOM05D000055 ORTHO05D003892 7.1e-19 97.8 130 48.5
Psat5g277920 Pisum sativum HOM05D000055 ORTHO05D003892 9.3e-19 97.4 125 44.8
Ah.15g094100 Amaranthus hybridus HOM05D000055 ORTHO05D003892 1.6e-18 96.7 135 47.4
BcaC04g19713 Brassica carinata HOM05D000055 ORTHO05D003892 1.6e-18 96.7 130 47.7
C09p53200 Brassica napus HOM05D000055 ORTHO05D003892 1.6e-18 96.7 130 47.7
BolC9t58195H Brassica oleracea HOM05D000055 ORTHO05D003892 1.6e-18 96.7 130 47.7
TPR.G11565 Trifolium pratense HOM05D000055 ORTHO05D003892 1.6e-18 96.7 126 47.6
HPP92_005398 Vanilla planifolia HOM05D000055 ORTHO05D003892 1.6e-18 96.7 125 47.2
Thhalv10013666m.g Eutrema salsugineum HOM05D000055 ORTHO05D003892 4.6e-18 95.1 59 78.0
HPP92_012805 Vanilla planifolia HOM05D000055 ORTHO05D003892 4.6e-18 95.1 124 48.4
Ah.08g216770 Amaranthus hybridus HOM05D000055 ORTHO05D003892 6.0e-18 94.7 148 43.9
Sp5g16060 Schrenkiella parvula HOM05D000055 ORTHO05D003892 1.0e-17 94.0 58 75.9
Aa31LG4G14560 Aethionema arabicum HOM05D000055 ORTHO05D003892 1.3e-17 93.6 84 59.5
Lj3g0014873 Lotus japonicus HOM05D000055 ORTHO05D003892 1.3e-17 93.6 94 54.3
Aa31LG1G12540 Aethionema arabicum HOM05D000055 ORTHO05D003892 1.7e-17 93.2 132 46.2
Gohir.D05G076800 Gossypium hirsutum HOM05D000055 ORTHO05D003892 2.3e-17 92.8 99 49.5
AL8G37140 Arabidopsis lyrata HOM05D000055 ORTHO05D003892 3.0e-17 92.4 131 46.6
AT3G45240 Arabidopsis thaliana HOM05D000055 ORTHO05D003892 3.0e-17 92.4 92 55.4
Thhalv10002549m.g Eutrema salsugineum HOM05D000055 ORTHO05D003892 3.0e-17 92.4 61 73.8
AL5G23810 Arabidopsis lyrata HOM05D000055 ORTHO05D003892 3.9e-17 92.0 125 49.6
BcaC03g13960 Brassica carinata HOM05D000055 ORTHO05D003892 5.1e-17 91.7 62 71.0
C02p11590 Brassica napus HOM05D000055 ORTHO05D003892 5.1e-17 91.7 62 71.0
BcaB08g36351 Brassica carinata HOM05D000055 ORTHO05D003892 6.6e-17 91.3 129 47.3
Carub.0005s1102 Capsella rubella HOM05D000055 ORTHO05D003892 6.6e-17 91.3 91 54.9
BcaB05g22653 Brassica carinata HOM05D000055 ORTHO05D003892 8.7e-17 90.9 58 74.1
Lj3g0023786 Lotus japonicus HOM05D000055 ORTHO05D003892 8.7e-17 90.9 124 43.5
Sp6g22120 Schrenkiella parvula HOM05D000055 ORTHO05D003892 1.9e-16 89.7 125 48.8
Os03g0711300 Oryza sativa ssp. japonica HOM05D000055 ORTHO05D003892 5.6e-16 88.2 153 39.9
Carub.0008s2124 Capsella rubella HOM05D000055 ORTHO05D003892 1.6e-15 86.7 125 46.4
BolC2t07246H Brassica oleracea HOM05D000055 ORTHO05D003892 2.1e-15 86.3 125 44.8
GSVIVG01025173001 Vitis vinifera HOM05D000055 ORTHO05D003892 2.1e-15 86.3 51 76.5
Zm00001eb075500 Zea mays HOM05D000055 ORTHO05D003892 2.8e-15 85.9 146 39.7
ATR0115G016 Amborella trichopoda HOM05D000055 ORTHO05D003892 3.6e-15 85.5 125 40.8
BraA02t05716Z Brassica rapa HOM05D000055 ORTHO05D003892 3.6e-15 85.5 125 44.0
CARHR274210 Cardamine hirsuta HOM05D000055 ORTHO05D003892 3.6e-15 85.5 125 46.4
Zm00001eb427480 Zea mays HOM05D000055 ORTHO05D003892 4.8e-15 85.1 153 39.2
SEGI_17972 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 8.1e-15 84.3 134 41.8
Psat7g224720 Pisum sativum HOM05D000055 ORTHO05D003892 1.4e-14 83.6 125 43.2
AT5G60550 Arabidopsis thaliana HOM05D000055 ORTHO05D003892 2.4e-14 82.8 100 50.0
AUR62001489 Chenopodium quinoa HOM05D000055 ORTHO05D003892 9.9e-13 77.4 67 55.2
TPR.G23906 Trifolium pratense HOM05D000055 ORTHO05D003892 2.9e-12 75.9 72 51.4
Actinidia24094 Actinidia chinensis HOM05D000055 ORTHO05D003892 6.4e-12 74.7 43 81.4
TAR633G1429 Trochodendron aralioides HOM05D000055 ORTHO05D414604 8.4e-12 74.3 126 40.5
Lj2A1030G59 Lonicera japonica HOM05D000055 ORTHO05D003892 2.4e-11 72.8 42 81.0
Actinidia20449 Actinidia chinensis HOM05D000055 ORTHO05D003892 4.6e-10 68.6 41 80.5
MBI19_g17414_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D003892 5.6e-08 61.6 126 34.9
Mapoly0069s0064 Marchantia polymorpha HOM05D000055 ORTHO05D003892 6.2e-07 58.2 73 43.8
Pp3c22_18850 Physcomitrium patens HOM05D000055 ORTHO05D003892 1.4e-06 57.0 36 72.2


User provided reference genes

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