Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D01558 Erythranthe guttata HOM05D004897 ORTHO05D005928 0.0e+00 1184.5 681 100.0
MSTRG.4571 Avicennia marina HOM05D004897 ORTHO05D005928 5.8e-228 794.7 704 70.3
SalBow1G4576 Salvia bowleyana HOM05D004897 ORTHO05D005928 3.9e-208 728.8 699 67.7
SGA_v2.0_scaffold168G38498 Striga asiatica HOM05D004897 ORTHO05D005928 1.9e-202 709.9 703 65.3
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 4.9e-187 658.7 688 62.1
Cc04_g06380 Coffea canephora HOM05D004897 ORTHO05D005928 9.4e-154 548.1 702 55.3
Actinidia18901 Actinidia chinensis HOM05D004897 ORTHO05D005928 2.2e-150 537.0 716 53.2
CSS0030961 Camellia sinensis var. sinensis HOM05D004897 ORTHO05D005928 8.2e-150 535.0 728 53.4
Actinidia35124 Actinidia chinensis HOM05D004897 ORTHO05D005928 1.7e-147 527.3 728 51.9
Duzib084G0246 Durio zibethinus HOM05D004897 ORTHO05D005928 1.4e-144 517.7 716 53.4
Nitab4.5_0006894g0040 Nicotiana tabacum HOM05D004897 ORTHO05D005928 8.8e-144 515.0 747 51.5
Hma1.2p1_0669F.1_g200180 Hydrangea macrophylla HOM05D004897 ORTHO05D005928 1.3e-142 511.1 740 51.9
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 8.2e-142 508.4 715 52.4
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 1.2e-140 504.6 710 52.1
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 1.6e-140 504.2 721 51.6
Thecc.03G053700 Theobroma cacao HOM05D004897 ORTHO05D005928 7.7e-140 501.9 718 51.9
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 1.9e-138 497.3 722 51.1
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 1.6e-137 494.2 721 51.0
Lj9C421G3 Lonicera japonica HOM05D004897 ORTHO05D005928 1.6e-137 494.2 697 52.5
Nitab4.5_0001456g0120 Nicotiana tabacum HOM05D004897 ORTHO05D005928 1.6e-137 494.2 734 50.4
DCAR_014009 Daucus carota HOM05D004897 ORTHO05D005928 4.0e-136 489.6 702 50.9
Rhsim12G0138900 Rhododendron simsii HOM05D004897 ORTHO05D005928 1.3e-134 484.6 689 51.7
Cfa019677 Carpinus fangiana HOM05D004897 ORTHO05D005928 8.3e-134 481.9 718 50.6
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 1.1e-133 481.5 714 50.0
TAR622G0961 Trochodendron aralioides HOM05D004897 ORTHO05D005928 3.1e-133 479.9 748 48.5
Potri.015G039800 Populus trichocarpa HOM05D004897 ORTHO05D005928 5.9e-132 475.7 720 49.0
Ciclev10007731m.g Citrus clementina HOM05D004897 ORTHO05D005928 1.3e-131 474.6 690 51.9
Prupe.5G232100 Prunus persica HOM05D004897 ORTHO05D005928 1.1e-130 471.5 711 50.1
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 1.9e-130 470.7 708 50.6
Lalb_Chr16g0387081 Lupinus albus HOM05D004897 ORTHO05D005928 3.2e-130 469.9 707 48.7
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 3.6e-129 466.5 708 50.3
FAN13G1819 Fragaria x ananassa HOM05D004897 ORTHO05D005928 2.3e-128 463.8 715 49.4
Nn4g24194 Nelumbo nucifera HOM05D004897 ORTHO05D005928 2.3e-128 463.8 738 46.9
FAN04G2242 Fragaria x ananassa HOM05D004897 ORTHO05D005928 4.0e-128 463.0 712 49.9
QL10p028331 Quercus lobata HOM05D004897 ORTHO05D005928 4.0e-128 463.0 711 50.8
QL10p028216 Quercus lobata HOM05D004897 ORTHO05D005928 8.8e-128 461.8 711 50.6
TWI81G0456 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 5.7e-127 459.1 718 47.8
Gohir.A09G175700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 1.7e-126 457.6 712 47.5
Lalb_Chr05g0221751 Lupinus albus HOM05D004897 ORTHO05D005928 2.2e-126 457.2 693 48.3
Manes.14G170400 Manihot esculenta HOM05D004897 ORTHO05D005928 2.2e-126 457.2 729 47.3
Medtr8g107060 Medicago truncatula HOM05D004897 ORTHO05D005928 4.9e-126 456.1 707 48.2
Sabra15G0057300 Salix brachista HOM05D004897 ORTHO05D005928 7.0e-125 452.2 717 47.8
Psat7g002120 Pisum sativum HOM05D004897 ORTHO05D005928 9.2e-125 451.8 713 47.4
CiPaw.15G140900 Carya illinoinensis HOM05D004897 ORTHO05D005928 2.0e-124 450.7 724 48.1
TWI60G0918 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 2.0e-124 450.7 726 47.5
Hund02326 Selenicereus undatus HOM05D004897 ORTHO05D005928 3.5e-124 449.9 715 49.7
FAN08G3076 Fragaria x ananassa HOM05D004897 ORTHO05D005928 5.9e-124 449.1 715 49.1
FAN18G0124 Fragaria x ananassa HOM05D004897 ORTHO05D005928 7.7e-124 448.7 717 48.4
Phvul.002G329100 Phaseolus vulgaris HOM05D004897 ORTHO05D005928 8.6e-123 445.3 720 47.1
VMungo0251G1788 Vigna mungo HOM05D004897 ORTHO05D005928 4.3e-122 443.0 722 47.4
MBI12_g30398_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D005928 5.6e-122 442.6 727 46.9
vmacro16414 Vaccinium macrocarpon HOM05D004897 ORTHO05D005928 5.6e-122 442.6 873 43.5
ClCG06G014390 Citrullus lanatus HOM05D004897 ORTHO05D005928 1.2e-121 441.4 713 46.6
COL.COLO4_16135 Corchorus olitorius HOM05D004897 ORTHO05D005928 1.2e-121 441.4 708 48.6
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 2.1e-121 440.7 704 47.3
CsaV3_1G004270 Cucumis sativus L. HOM05D004897 ORTHO05D005928 6.1e-121 439.1 716 48.9
Glyma.05G244800 Glycine max HOM05D004897 ORTHO05D005928 1.0e-120 438.3 723 47.9
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 1.8e-120 437.6 688 48.7
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 4.0e-120 436.4 725 47.6
Dinv18253 Davidia involucrata HOM05D004897 ORTHO05D005928 5.2e-120 436.0 476 59.0
Haze_18817 Corylus avellana HOM05D004897 ORTHO05D005928 2.0e-119 434.1 787 45.2
ECA233G2541 Erigeron canadensis HOM05D004897 ORTHO05D005928 4.4e-119 433.0 677 47.9
Ca_17200_v3 Cicer arietinum L. HOM05D004897 ORTHO05D005928 1.1e-117 428.3 716 46.2
THA.LOC104812165 Tarenaya hassleriana HOM05D004897 ORTHO05D005928 5.4e-117 426.0 704 48.6
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 4.6e-116 422.9 685 48.6
Atru.chr9.1748 Acer truncatum HOM05D004897 ORTHO05D005928 2.5e-114 417.2 704 47.6
C05p16500 Brassica napus HOM05D004897 ORTHO05D005928 2.5e-114 417.2 690 47.1
PSO017G1741 Papaver somniferum HOM05D004897 ORTHO05D005928 7.3e-114 415.6 699 47.8
BcaB07g31825 Brassica carinata HOM05D004897 ORTHO05D005928 1.2e-113 414.8 687 48.5
AT1G18190 Arabidopsis thaliana HOM05D004897 ORTHO05D005928 1.6e-113 414.5 692 47.0
BolC5t30347H Brassica oleracea HOM05D004897 ORTHO05D005928 6.2e-113 412.5 685 47.2
arahy.Tifrunner.gnm1.ann1.QTT902 Arachis hypogaea HOM05D004897 ORTHO05D005928 8.0e-113 412.1 736 45.0
arahy.Tifrunner.gnm1.ann1.Y8NJDB Arachis hypogaea HOM05D004897 ORTHO05D005928 1.8e-112 411.0 738 45.7
A06p14220 Brassica napus HOM05D004897 ORTHO05D005928 3.1e-112 410.2 692 47.1
BraA06t24553Z Brassica rapa HOM05D004897 ORTHO05D005928 8.9e-112 408.7 688 47.2
Aqoxy3G00106 Aquilegia oxysepala HOM05D004897 ORTHO05D005928 5.8e-111 406.0 701 46.6
Sp1g16170 Schrenkiella parvula HOM05D004897 ORTHO05D005928 5.8e-111 406.0 699 45.8
Carub.0001s1783 Capsella rubella HOM05D004897 ORTHO05D005928 1.3e-110 404.8 692 47.0
PSO478G0546 Papaver somniferum HOM05D004897 ORTHO05D005928 1.7e-110 404.4 698 46.7
Sc10g0009320 Simmondsia chinensis HOM05D004897 ORTHO05D005928 3.7e-110 403.3 691 48.6
Thhalv10007004m.g Eutrema salsugineum HOM05D004897 ORTHO05D005928 6.4e-110 402.5 688 47.4
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 6.0e-108 396.0 684 45.0
Aa31LG7G2880 Aethionema arabicum HOM05D004897 ORTHO05D005928 3.0e-107 393.7 743 44.4
MELO3C017351.2 Cucumis melo HOM05D004897 ORTHO05D005928 3.0e-107 393.7 714 45.0
Sed0002019 Sechium edule HOM05D004897 ORTHO05D005928 6.6e-107 392.5 719 45.6
AUR62042935 Chenopodium quinoa HOM05D004897 ORTHO05D005928 1.9e-106 391.0 683 44.5
AL1G30560 Arabidopsis lyrata HOM05D004897 ORTHO05D005928 7.3e-106 389.0 685 45.3
PGR083G0946 Punica granatum HOM05D004897 ORTHO05D005928 4.7e-105 386.3 718 43.6
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 6.2e-105 386.0 706 43.2
Peaxi162Scf00683g00441 Petunia axillaris HOM05D004897 ORTHO05D005928 1.5e-103 381.3 297 71.0
HanXRQChr08g0227441 Helianthus annuus HOM05D004897 ORTHO05D005928 7.5e-103 379.0 696 46.7
Ah.11g045250 Amaranthus hybridus HOM05D004897 ORTHO05D005928 1.3e-102 378.3 694 46.0
Dinv10174 Davidia involucrata HOM05D004897 ORTHO05D005928 2.1e-100 370.9 576 49.8
BcaC05g25714 Brassica carinata HOM05D004897 ORTHO05D005928 2.5e-98 364.0 354 58.5
Sed0018128 Sechium edule HOM05D004897 ORTHO05D005928 3.1e-96 357.1 509 49.9
TPR.G1406 Trifolium pratense HOM05D004897 ORTHO05D005928 1.1e-93 348.6 665 44.8
BcaC07g38902 Brassica carinata HOM05D004897 ORTHO05D005928 2.7e-92 344.0 680 39.1
Cpa.g.sc3.408 Carica papaya HOM05D004897 ORTHO05D005928 6.6e-91 339.3 593 49.1
C08p18450 Brassica napus HOM05D004897 ORTHO05D005928 7.1e-85 319.3 337 55.2
BraA08t34983Z Brassica rapa HOM05D004897 ORTHO05D005928 7.1e-85 319.3 334 55.7
FvH4_5g17221 Fragaria vesca HOM05D004897 ORTHO05D005928 7.8e-84 315.8 575 47.5
HPP92_013368 Vanilla planifolia HOM05D004897 ORTHO05D005928 2.8e-81 307.4 686 40.5
Os04g0652500 Oryza sativa ssp. japonica HOM05D004897 ORTHO05D005928 6.9e-72 276.2 348 48.3
BcaNung05436 Brassica carinata HOM05D004897 ORTHO05D005928 3.2e-69 267.3 306 53.3
Zm00001eb068130 Zea mays HOM05D004897 ORTHO05D005928 7.4e-66 256.1 301 50.5
GSVIVG01008417001 Vitis vinifera HOM05D004897 ORTHO05D005928 3.7e-65 253.8 233 61.8
CARHR018760 Cardamine hirsuta HOM05D004897 ORTHO05D005928 4.9e-62 243.4 253 55.3
GSVIVG01008418001 Vitis vinifera HOM05D004897 ORTHO05D005928 4.2e-61 240.4 487 47.0
BolC8t49476H Brassica oleracea HOM05D004897 ORTHO05D005928 7.1e-61 239.6 300 48.7
ATR1102G018 Amborella trichopoda HOM05D004897 ORTHO05D005928 3.7e-49 200.7 239 52.7
BcaB03g12969 Brassica carinata HOM05D004897 ORTHO05D005928 9.1e-48 196.1 297 46.1
Gorai.006G192100 Gossypium raimondii HOM05D004897 ORTHO05D005928 2.3e-43 181.4 174 55.7
Gohir.D09G170550 Gossypium hirsutum HOM05D004897 ORTHO05D005928 5.1e-43 180.3 174 55.7
Pp3c2_5550 Physcomitrium patens HOM05D004897 ORTHO05D005928 2.6e-42 177.9 337 40.4
CARHR018770 Cardamine hirsuta HOM05D004897 ORTHO05D005928 5.7e-42 176.8 441 42.9
ATR1102G065 Amborella trichopoda HOM05D004897 ORTHO05D005928 1.1e-40 172.6 529 35.9
unitig_0.g806 Utricularia gibba HOM05D004897 ORTHO05D005928 9.1e-40 169.5 195 52.8
Mapoly0056s0112 Marchantia polymorpha HOM05D004897 ORTHO05D005928 2.0e-39 168.3 366 36.3
Oeu041185.1 Olea europaea HOM05D004897 ORTHO05D005928 5.0e-38 163.7 415 37.3
Oeu041181.1 Olea europaea HOM05D004897 ORTHO05D005928 2.1e-36 158.3 299 42.1
AagrBONN_evm.TU.Sc2ySwM_344.4779 Anthoceros agrestis HOM05D004897 ORTHO05D005928 5.2e-35 153.7 750 31.6
SEGI_33031 Sequoiadendron giganteum HOM05D004897 ORTHO05D005928 1.3e-30 139.0 243 37.4
Zm00001eb072950 Zea mays HOM05D004897 ORTHO05D005928 1.3e-25 122.5 145 49.0
Actinidia04720 Actinidia chinensis HOM05D004897 ORTHO05D005928 4.5e-23 114.0 405 37.0
AUR62041008 Chenopodium quinoa HOM05D004897 ORTHO05D005928 7.7e-23 113.2 420 39.5
CDE05G0958 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 1.0e-22 112.8 87 72.4
Zm00001eb168530 Zea mays HOM05D004897 ORTHO05D005928 3.2e-21 107.8 127 45.7
Zm00001eb243110 Zea mays HOM05D004897 ORTHO05D005928 3.2e-21 107.8 127 45.7
Zm00001eb381910 Zea mays HOM05D004897 ORTHO05D005928 3.2e-21 107.8 127 45.7
Zm00001eb382530 Zea mays HOM05D004897 ORTHO05D005928 3.2e-21 107.8 127 45.7
Zm00001eb280830 Zea mays HOM05D004897 ORTHO05D005928 8.3e-17 93.2 119 42.0
Zm00001eb382330 Zea mays HOM05D004897 ORTHO05D005928 1.2e-15 89.4 84 54.8
Peaxi162Scf00683g00456 Petunia axillaris HOM05D004897 ORTHO05D005928 2.9e-14 84.7 139 45.3
BcaC05g25715 Brassica carinata HOM05D004897 ORTHO05D005928 1.2e-12 79.3 205 38.0
PGSC0003DMG403005669 Solanum tuberosum HOM05D004897 ORTHO05D005928 1.2e-12 79.3 59 64.4
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 3.0e-11 74.7 329 26.7
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 6.8e-11 73.6 318 24.8
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 2.6e-10 71.6 351 25.4
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 3.4e-10 71.2 278 27.0
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 7.5e-10 70.1 330 24.8
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 9.8e-10 69.7 330 23.9
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.3e-09 69.3 338 25.4
TWI36G1671 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 4.9e-09 67.4 95 49.5
Actinidia04719 Actinidia chinensis HOM05D004897 ORTHO05D005928 6.3e-09 67.0 50 66.0
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 6.3e-09 67.0 340 23.8
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.3e-09 66.6 340 23.8
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 1.1e-08 66.2 334 24.0
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 1.1e-08 66.2 335 24.8
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.4e-08 65.9 313 24.0
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 1.4e-08 65.9 330 23.0
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 1.8e-08 65.5 330 23.0
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.4e-08 65.1 329 24.3
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.4e-08 65.1 329 24.3
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 2.4e-08 65.1 361 24.4
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 3.1e-08 64.7 303 26.1
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 3.1e-08 64.7 361 23.8
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 3.1e-08 64.7 302 24.8
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 4.1e-08 64.3 334 23.1
SEGI_22595 Sequoiadendron giganteum HOM05D004897 ORTHO05D005928 9.2e-08 63.2 589 29.5
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 1.2e-07 62.8 359 24.0
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 1.2e-07 62.8 369 24.9
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 2.0e-07 62.0 307 23.8
SMO269G0021 Selaginella moellendorffii HOM05D004897 ORTHO05D005928 2.0e-07 62.0 564 25.5
BolC8t49477H Brassica oleracea HOM05D004897 ORTHO05D005928 2.7e-07 61.6 272 32.0
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.3e-06 58.5 347 22.2
Prupe.7G033500 Prunus persica HOM05D004897 ORTHO05D005928 2.9e-06 58.2 69 56.5
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 3.8e-06 57.8 362 21.8
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 3.8e-06 57.8 335 21.5


User provided reference genes

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