Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 1.9e-262 908.7 464 100.0
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 1.1e-201 706.8 464 76.5
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.9e-190 669.5 470 71.9
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 1.8e-188 662.9 516 68.0
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 2.4e-169 599.4 435 70.1
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 5.2e-164 581.6 380 73.7
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 6.8e-164 581.3 380 73.4
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.5e-163 580.1 466 63.7
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 2.2e-162 576.2 473 62.6
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 3.7e-162 575.5 474 62.7
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 3.7e-162 575.5 473 63.0
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 1.1e-161 573.9 464 63.4
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 1.9e-161 573.2 466 63.7
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 4.1e-161 572.0 464 62.5
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 4.1e-161 572.0 465 62.4
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 9.2e-161 570.9 466 62.7
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 2.1e-160 569.7 473 61.9
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 7.8e-160 567.8 466 62.4
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 1.3e-159 567.0 384 70.8
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.7e-159 566.6 473 61.7
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 1.1e-158 563.9 395 68.6
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 1.5e-158 563.5 469 61.6
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 1.9e-158 563.1 379 71.0
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 3.3e-158 562.4 464 61.2
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 5.6e-158 561.6 471 62.0
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 7.3e-158 561.2 384 70.1
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 9.5e-158 560.8 472 60.6
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 1.2e-157 560.5 404 67.3
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 1.2e-157 560.5 390 69.0
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 3.6e-157 558.9 472 61.2
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 4.7e-157 558.5 421 64.8
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 6.2e-157 558.1 384 69.3
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 6.2e-157 558.1 410 64.9
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 1.1e-156 557.4 416 66.1
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.8e-156 556.6 470 61.3
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 2.3e-156 556.2 407 66.6
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 2.3e-156 556.2 407 65.6
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 2.3e-156 556.2 407 68.1
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 6.8e-156 554.7 472 61.4
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 6.8e-156 554.7 468 62.0
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 8.9e-156 554.3 465 61.3
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 8.9e-156 554.3 404 66.6
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 8.9e-156 554.3 466 61.2
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 1.2e-155 553.9 485 60.6
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 1.5e-155 553.5 411 65.0
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 2.6e-155 552.7 464 62.5
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 3.4e-155 552.4 468 61.1
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 7.6e-155 551.2 456 61.4
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 1.3e-154 550.4 404 65.8
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 2.2e-154 549.7 384 68.8
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 3.7e-154 548.9 384 68.0
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 8.4e-154 547.7 477 59.5
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 1.4e-153 547.0 465 61.5
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 1.4e-153 547.0 383 68.4
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 1.9e-153 546.6 385 67.0
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 7.1e-153 544.7 430 63.7
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.2e-152 543.9 380 67.6
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 2.1e-152 543.1 418 64.8
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 3.5e-152 542.3 378 67.7
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 6.0e-152 541.6 483 57.1
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 6.0e-152 541.6 475 58.5
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 3.9e-151 538.9 465 60.4
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 3.3e-150 535.8 423 63.4
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 3.3e-150 535.8 381 66.7
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 4.3e-150 535.4 383 67.4
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 9.6e-150 534.3 381 66.9
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.1e-149 533.1 465 59.8
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 4.7e-149 531.9 381 67.5
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 6.2e-149 531.6 381 67.2
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 1.4e-148 530.4 381 67.5
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 1.4e-148 530.4 365 69.3
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 2.4e-148 529.6 420 62.1
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 4.0e-148 528.9 463 59.0
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 2.6e-147 526.2 390 65.9
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 3.4e-147 525.8 391 66.0
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 4.4e-147 525.4 389 66.1
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 1.4e-145 520.4 381 66.1
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.5e-144 515.8 466 59.4
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 6.0e-144 515.0 402 63.9
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 3.9e-143 512.3 496 56.2
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 6.6e-143 511.5 365 63.8
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 2.5e-142 509.6 415 60.2
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 9.6e-142 507.7 500 57.4
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 2.4e-140 503.1 364 66.8
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 2.6e-139 499.6 367 63.5
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 1.3e-138 497.3 405 60.7
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 4.9e-138 495.4 335 70.1
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 4.9e-138 495.4 332 70.8
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 7.1e-137 491.5 426 59.9
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 1.1e-134 484.2 425 61.2
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 6.2e-133 478.4 397 59.9
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 6.9e-132 474.9 457 56.7
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.5e-126 457.2 412 57.5
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 9.6e-126 454.5 376 60.9
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 9.6e-126 454.5 317 66.6
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.0e-122 444.5 378 60.1
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 2.9e-122 443.0 381 59.6
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 1.7e-114 417.2 280 69.6
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 3.3e-110 402.9 419 53.2
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 2.8e-109 399.8 405 54.1
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 4.8e-109 399.1 324 60.5
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 1.7e-106 390.6 357 51.8
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 1.7e-98 364.0 464 46.3
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.4e-97 360.9 413 48.9
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 3.2e-97 359.8 260 69.2
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 9.4e-89 331.6 277 64.3
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 8.0e-88 328.6 217 70.5
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 2.3e-87 327.0 403 43.7
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 9.1e-84 315.1 361 46.5
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 2.0e-83 313.9 209 70.8
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 8.5e-82 308.5 385 42.9
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 1.2e-78 298.1 302 56.0
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.4e-71 274.6 306 50.7
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 1.2e-70 271.6 274 48.9
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 4.4e-70 269.6 175 73.7
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 3.7e-69 266.5 172 72.7
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 6.6e-66 255.8 255 52.9
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 1.9e-65 254.2 289 52.6
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.5e-65 253.8 256 53.1
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 9.5e-65 251.9 217 59.4
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 6.8e-63 245.7 256 52.0
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 1.5e-54 218.0 292 41.8
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 4.4e-54 216.5 182 61.0
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 8.9e-47 192.2 160 64.4
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 1.9e-41 174.5 278 41.0
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 2.2e-37 161.0 96 74.0
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 1.9e-33 147.9 88 71.6
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 7.8e-27 125.9 365 31.0
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 1.0e-26 125.6 73 76.7
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 1.1e-23 115.5 143 50.3
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 4.5e-22 110.2 140 48.6
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.8e-21 107.1 224 34.8
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 6.0e-19 99.8 124 46.8
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 1.9e-17 94.7 67 65.7
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 7.4e-17 92.8 69 62.3
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 2.9e-13 80.9 88 53.4
MCO01G624 Micromonas commoda HOM05D005258 ORTHO05D006525 6.4e-13 79.7 250 26.8
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 7.9e-11 72.8 39 79.5
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 1.0e-10 72.4 125 32.0
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 7.4e-09 66.2 65 53.8
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 2.4e-07 61.2 38 57.9


User provided reference genes

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