Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 0.0e+00 1260.0 669 100.0
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 1.1e-268 929.9 665 73.2
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 3.2e-263 911.8 677 72.2
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 7.6e-257 890.6 713 66.6
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 1.1e-255 886.7 667 70.6
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 1.2e-246 856.7 669 68.9
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 1.6e-243 846.3 673 66.7
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.0e-241 839.3 669 66.8
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 1.7e-240 836.3 668 65.7
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.3e-237 826.6 658 67.5
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 9.6e-236 820.5 671 64.8
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 1.4e-234 816.6 669 65.5
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 2.0e-233 812.8 657 66.7
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 6.7e-229 797.7 678 65.5
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 2.0e-225 786.2 679 64.5
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 1.3e-224 783.5 669 63.8
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 5.0e-224 781.6 658 65.0
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 1.6e-222 776.5 652 64.4
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.1e-220 770.4 676 60.2
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 4.3e-220 768.5 659 63.7
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 3.1e-218 762.3 667 62.1
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 3.1e-218 762.3 670 61.2
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.1e-215 753.8 666 59.9
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 3.2e-215 752.3 655 61.2
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 9.4e-215 750.7 667 60.6
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.7e-214 749.2 630 62.2
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 7.9e-214 747.7 668 60.2
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.8e-213 746.5 666 60.4
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 4.4e-212 741.9 671 60.8
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 5.7e-212 741.5 685 60.1
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 7.4e-212 741.1 669 59.5
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 9.7e-212 740.7 674 59.8
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 2.8e-211 739.2 650 60.0
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 1.2e-209 733.8 707 57.1
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 2.0e-209 733.0 663 59.7
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 5.9e-209 731.5 661 57.9
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 1.0e-208 730.7 582 68.4
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 8.5e-208 727.6 677 58.9
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.1e-207 727.2 651 60.1
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 2.5e-207 726.1 672 57.9
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 3.2e-207 725.7 669 58.0
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 9.4e-207 724.2 651 57.6
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 4.7e-206 721.8 707 56.4
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.2e-205 718.4 673 58.2
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 5.2e-205 718.4 674 58.8
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 6.7e-205 718.0 666 58.4
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 1.3e-203 713.8 657 57.8
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 1.3e-203 713.8 666 55.7
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 8.2e-203 711.1 638 59.9
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 1.8e-202 709.9 654 58.3
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 2.4e-202 709.5 670 58.4
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 2.4e-202 709.5 668 55.5
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 2.4e-202 709.5 668 56.7
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 7.0e-202 708.0 664 56.8
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 1.2e-201 707.2 660 55.9
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 1.6e-201 706.8 668 55.5
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 2.0e-201 706.4 666 56.0
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 5.9e-201 704.9 659 56.4
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 5.9e-201 704.9 668 56.4
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 7.7e-201 704.5 666 56.0
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 1.3e-200 703.7 656 56.4
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 1.3e-200 703.7 639 56.5
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 1.7e-200 703.4 666 56.6
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 2.2e-200 703.0 666 56.3
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.5e-199 700.3 653 57.9
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 6.1e-198 694.9 650 56.6
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 1.0e-197 694.1 670 56.4
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 4.0e-197 692.2 650 56.3
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.2e-196 690.6 658 57.8
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-195 687.2 666 55.0
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 2.8e-195 686.0 666 54.8
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 2.8e-195 686.0 665 55.0
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 9.1e-194 681.0 668 54.6
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 7.7e-193 677.9 640 56.7
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 1.5e-191 673.7 655 55.7
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 5.5e-191 671.8 640 56.6
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 7.2e-191 671.4 639 56.5
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 1.2e-190 670.6 639 56.0
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 1.2e-190 670.6 681 52.4
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 8.0e-190 667.9 639 55.7
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 1.4e-189 667.2 639 56.2
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 1.4e-189 667.2 639 56.2
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 2.3e-189 666.4 639 56.2
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 2.3e-189 666.4 674 53.6
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 2.6e-188 662.9 652 54.6
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 3.4e-188 662.5 638 54.7
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 4.4e-188 662.1 583 58.3
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 6.3e-187 658.3 639 55.9
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 8.3e-187 657.9 628 56.4
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 2.4e-186 656.4 670 55.7
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 4.1e-186 655.6 670 55.5
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 1.2e-185 654.1 628 56.1
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.5e-183 647.1 545 61.5
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 4.2e-183 645.6 573 61.4
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 7.2e-183 644.8 632 55.2
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.6e-182 643.7 661 54.5
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.1e-182 643.3 657 51.9
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.8e-181 640.2 566 62.0
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.4e-180 636.0 673 52.6
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 2.7e-177 626.3 544 59.4
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 2.9e-176 622.9 671 55.0
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 2.3e-173 613.2 516 64.1
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 3.3e-167 592.8 624 55.8
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.6e-166 590.5 537 57.7
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 8.3e-163 578.2 531 56.9
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 5.6e-159 565.5 666 47.1
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 2.2e-155 553.5 654 49.1
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 8.3e-155 551.6 657 46.9
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 1.4e-149 534.3 664 45.6
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 4.6e-145 519.2 661 44.9
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 6.4e-139 498.8 395 67.6
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 7.8e-137 491.9 662 43.2
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 1.4e-130 471.1 655 43.1
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 4.2e-130 469.5 402 60.0
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.1e-127 461.5 659 42.8
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.1e-125 454.9 659 42.3
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 2.9e-123 446.8 663 39.2
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 3.8e-123 446.4 663 41.5
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 5.1e-120 436.0 432 54.6
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 5.0e-107 392.9 396 52.3
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 8.0e-81 305.8 250 64.8
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 5.5e-74 283.1 309 52.1
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 1.5e-71 275.0 385 44.7
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.1e-69 268.9 446 38.8
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 2.1e-65 254.6 429 38.2
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.2e-63 248.8 221 62.9
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 9.5e-58 229.2 233 52.8
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 5.8e-55 219.9 198 62.1
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 4.1e-53 213.8 384 38.3
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 7.5e-47 193.0 383 37.1
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 2.4e-45 188.0 201 52.7
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 1.2e-44 185.7 329 38.0
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.6e-43 179.9 236 49.6
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 2.0e-39 168.3 268 41.4
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 3.2e-37 161.0 167 52.1
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 1.2e-33 149.1 108 72.2
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 6.2e-33 146.7 310 36.8
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 2.4e-32 144.8 623 25.5
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 7.6e-31 139.8 188 44.7
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 4.9e-30 137.1 256 35.5
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.4e-30 136.7 127 62.2
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.4e-29 134.8 133 54.1
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 6.4e-22 110.2 93 57.0
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 5.1e-19 100.5 96 53.1
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 8.1e-17 93.2 74 67.6
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.2e-15 89.4 132 43.9
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.8e-15 87.0 164 39.6
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 7.6e-15 86.7 73 60.3
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.6e-15 86.7 132 41.7
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 9.9e-15 86.3 81 54.3
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 2.9e-14 84.7 114 45.6
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.8e-11 75.5 68 55.9
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 2.3e-11 75.1 91 46.2
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.3e-11 75.1 66 57.6
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 2.5e-10 71.6 69 49.3
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 7.4e-10 70.1 47 70.2
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 2.8e-09 68.2 64 50.0
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 8.1e-09 66.6 64 53.1
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 1.2e-07 62.8 52 57.7
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 1.2e-07 62.8 108 39.8


User provided reference genes

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