Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 0.0e+00 1157.9 588 100.0
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 4.9e-252 874.4 589 78.6
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 3.7e-239 831.6 587 73.9
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 2.4e-238 828.9 585 73.7
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 5.0e-236 821.2 586 74.6
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 5.3e-230 801.2 592 71.1
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 7.7e-229 797.3 589 73.2
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.3e-228 796.6 588 73.1
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 2.5e-227 792.3 592 70.4
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 1.4e-219 766.5 588 69.2
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 8.8e-209 730.7 634 64.5
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 3.3e-208 728.8 606 65.8
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 3.7e-207 725.3 590 66.3
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 2.0e-205 719.5 523 71.1
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 4.5e-205 718.4 631 62.9
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 6.5e-204 714.5 543 68.9
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 4.2e-203 711.8 620 64.0
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 4.2e-203 711.8 613 65.3
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 2.7e-202 709.1 547 68.7
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 8.0e-202 707.6 618 63.3
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 8.0e-202 707.6 603 65.0
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 1.0e-201 707.2 511 71.6
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 4.0e-201 705.3 450 78.2
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 6.8e-201 704.5 607 65.1
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 6.8e-201 704.5 537 69.8
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 8.8e-201 704.1 608 65.1
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 2.0e-200 703.0 596 64.6
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 4.4e-200 701.8 537 68.7
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 4.4e-200 701.8 552 67.4
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 7.5e-200 701.0 610 63.1
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 1.1e-198 697.2 467 74.3
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 2.4e-198 696.0 591 64.5
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 2.4e-198 696.0 596 64.4
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 9.1e-198 694.1 621 62.2
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 1.6e-197 693.3 620 62.6
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 2.0e-197 693.0 612 63.1
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 4.5e-197 691.8 603 63.2
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 7.7e-197 691.0 613 63.0
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 7.7e-197 691.0 600 65.0
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 1.0e-196 690.6 589 64.3
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 1.0e-196 690.6 446 76.0
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 1.3e-196 690.3 622 61.7
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 2.3e-196 689.5 534 67.6
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 2.9e-196 689.1 505 70.5
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 2.9e-196 689.1 598 63.4
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 2.9e-196 689.1 609 63.1
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 5.0e-196 688.3 589 64.2
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 5.0e-196 688.3 447 76.1
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 6.6e-196 688.0 549 69.0
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 6.6e-196 688.0 590 63.4
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 8.6e-196 687.6 518 68.3
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 3.3e-195 685.6 445 76.4
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 3.3e-195 685.6 606 63.2
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 4.2e-195 685.3 614 61.4
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 4.2e-195 685.3 471 73.2
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 1.2e-194 683.7 445 76.4
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.6e-194 683.3 410 81.5
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 2.8e-194 682.6 599 62.4
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 8.0e-194 681.0 616 60.7
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 8.0e-194 681.0 606 62.7
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 1.4e-193 680.2 615 63.3
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 5.2e-193 678.3 612 61.6
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 6.8e-193 677.9 527 66.4
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 1.5e-192 676.8 409 80.4
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 2.0e-192 676.4 610 61.1
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.0e-192 676.4 618 63.6
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 4.4e-192 675.2 611 62.2
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 4.4e-192 675.2 553 64.0
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.7e-191 673.3 618 63.1
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 8.3e-191 671.0 614 62.9
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 1.1e-190 670.6 415 78.6
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 1.4e-190 670.2 414 79.5
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 1.8e-190 669.8 613 60.7
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 3.1e-190 669.1 632 60.0
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 3.1e-190 669.1 452 74.8
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 5.4e-190 668.3 411 79.3
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 1.2e-189 667.2 413 79.4
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 2.0e-189 666.4 435 76.6
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 2.0e-189 666.4 408 80.1
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 2.0e-189 666.4 607 59.8
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 2.7e-189 666.0 619 59.5
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 3.5e-189 665.6 620 60.5
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 4.5e-189 665.2 406 79.8
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 5.9e-189 664.8 461 74.0
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 1.3e-188 663.7 511 66.3
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.7e-188 663.3 618 59.5
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 2.3e-188 662.9 611 62.2
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 3.9e-188 662.1 611 62.2
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 5.0e-188 661.8 601 60.2
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 9.5e-187 657.5 531 64.8
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.1e-186 656.4 499 67.7
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 2.8e-186 656.0 610 59.3
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 4.7e-186 655.2 605 60.5
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 8.0e-186 654.4 575 63.3
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.8e-185 653.3 403 79.2
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.8e-185 653.3 404 80.2
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 1.8e-185 653.3 607 59.1
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 5.2e-185 651.7 503 66.6
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 1.2e-184 650.6 403 76.9
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 2.0e-184 649.8 528 65.0
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 3.4e-184 649.0 408 78.2
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 3.7e-183 645.6 523 67.3
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 8.3e-183 644.4 450 71.6
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 1.9e-182 643.3 617 60.6
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 9.2e-182 641.0 557 62.3
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.2e-181 640.6 616 58.4
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 1.6e-181 640.2 441 73.5
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 4.6e-181 638.6 504 66.9
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.7e-180 636.7 510 65.3
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 7.3e-179 631.3 556 61.0
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 9.5e-179 630.9 481 67.2
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 6.2e-178 628.2 613 58.6
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 2.3e-177 626.3 613 57.6
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 6.8e-177 624.8 405 76.5
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 8.9e-177 624.4 592 59.0
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 5.8e-176 621.7 502 65.9
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 9.8e-176 620.9 591 58.9
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 9.8e-176 620.9 592 58.6
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 1.7e-175 620.2 619 59.6
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 1.7e-175 620.2 597 59.1
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 1.7e-175 620.2 618 56.6
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 8.3e-175 617.8 598 58.0
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 8.3e-175 617.8 407 74.7
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 3.5e-173 612.5 604 57.5
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 7.8e-173 611.3 615 57.6
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 1.7e-172 610.1 408 73.8
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 1.7e-172 610.1 449 68.6
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 1.7e-172 610.1 408 73.8
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 1.7e-172 610.1 408 73.8
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 1.7e-172 610.1 449 68.6
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 5.6e-171 605.1 614 57.3
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 1.6e-170 603.6 617 56.4
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 1.6e-170 603.6 346 84.4
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.4e-166 590.5 363 79.3
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 2.0e-160 570.1 597 57.6
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.6e-157 560.5 359 76.0
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 4.8e-146 522.3 395 66.8
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 4.0e-145 519.2 403 64.5
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.3e-143 514.2 362 69.6
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.2e-141 507.7 431 59.6
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 5.5e-134 482.3 376 66.0
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 7.4e-131 471.9 345 67.2
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 6.9e-129 465.3 315 70.8
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 8.2e-98 362.1 209 79.9
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 2.1e-93 347.4 437 46.0
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 3.0e-92 343.6 197 80.2
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.2e-85 321.6 398 54.5
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 3.7e-82 310.1 180 78.9
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 4.0e-76 290.0 159 84.3
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 9.8e-75 285.4 156 84.6
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 9.8e-75 285.4 156 84.6
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 3.7e-74 283.5 196 70.9
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 9.2e-65 252.3 473 38.3
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 1.1e-62 245.4 358 37.7
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 3.9e-55 220.3 302 39.7
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 6.2e-53 213.0 188 62.8
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 3.0e-47 194.1 279 37.6
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 6.6e-47 193.0 127 76.4
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 2.4e-41 174.5 188 50.5
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 1.3e-39 168.7 109 72.5
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.5e-35 155.2 110 66.4
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 1.7e-34 151.8 228 48.7
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.2e-33 147.5 88 76.1
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.2e-32 145.6 215 37.7
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 2.1e-32 144.8 100 72.0
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 6.6e-31 139.8 144 53.5
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 3.3e-30 137.5 83 74.7
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 3.6e-29 134.0 83 72.3
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 1.3e-26 125.6 129 48.8
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 1.3e-21 109.0 114 52.6
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 1.4e-17 95.5 100 52.0
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 5.7e-14 83.6 92 50.0
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 6.3e-13 80.1 173 33.5
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 4.5e-11 73.9 111 39.6
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 2.2e-10 71.6 41 80.5
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 1.1e-06 59.3 32 75.0


User provided reference genes

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