Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01798 Erythranthe guttata HOM05D003900 ORTHO05D005009 5.8e-205 718.4 433 100.0
SGA_v2.0_scaffold4G02283 Striga asiatica HOM05D003900 ORTHO05D005009 5.2e-113 412.9 356 59.6
SalBow3G3666 Salvia bowleyana HOM05D003900 ORTHO05D005009 3.8e-108 396.7 359 59.6
Cc02_g38560 Coffea canephora HOM05D003900 ORTHO05D005009 3.1e-81 307.4 370 47.3
PGSC0003DMG400000195 Solanum tuberosum HOM05D003900 ORTHO05D005009 2.7e-77 294.3 352 44.3
Solyc01g095110.4 Solanum lycopersicum HOM05D003900 ORTHO05D005009 1.9e-75 288.1 350 44.6
Sopen01g038900 Solanum pennellii HOM05D003900 ORTHO05D005009 3.3e-75 287.3 360 43.9
CAN.G78.130 Capsicum annuum HOM05D003900 ORTHO05D005009 2.8e-74 284.3 367 43.9
Nitab4.5_0010695g0010 Nicotiana tabacum HOM05D003900 ORTHO05D005009 1.2e-72 278.9 360 43.6
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 1.5e-72 278.5 343 44.0
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 3.4e-72 277.3 348 45.1
Nitab4.5_0000915g0110 Nicotiana tabacum HOM05D003900 ORTHO05D005009 9.9e-72 275.8 344 43.9
Atru.chr5.563 Acer truncatum HOM05D003900 ORTHO05D005009 1.7e-71 275.0 347 44.7
Atru.chr5.581 Acer truncatum HOM05D003900 ORTHO05D005009 4.9e-71 273.5 347 44.4
QL04p055515 Quercus lobata HOM05D003900 ORTHO05D005009 1.4e-70 271.9 323 47.4
Peaxi162Scf00020g00155 Petunia axillaris HOM05D003900 ORTHO05D005009 1.6e-69 268.5 360 42.2
CiPaw.01G067100 Carya illinoinensis HOM05D003900 ORTHO05D005009 4.6e-69 266.9 360 42.2
Gohir.A12G106900 Gossypium hirsutum HOM05D003900 ORTHO05D005009 6.6e-68 263.1 337 44.5
Gorai.008G119500 Gossypium raimondii HOM05D003900 ORTHO05D005009 1.5e-67 261.9 337 44.2
Thecc.01G352500 Theobroma cacao HOM05D003900 ORTHO05D005009 1.9e-67 261.5 352 44.3
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.5e-67 261.2 329 43.8
Gohir.D12G110200 Gossypium hirsutum HOM05D003900 ORTHO05D005009 2.5e-67 261.2 337 43.9
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 4.7e-66 256.9 329 43.2
CiPaw.01G067400 Carya illinoinensis HOM05D003900 ORTHO05D005009 4.7e-66 256.9 337 41.5
GSVIVG01026966001 Vitis vinifera HOM05D003900 ORTHO05D005009 5.2e-65 253.4 314 47.1
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 9.0e-65 252.7 329 42.2
Haze_15564 Corylus avellana HOM05D003900 ORTHO05D005009 1.5e-64 251.9 332 43.7
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 5.8e-64 250.0 349 41.0
CiPaw.01G066600 Carya illinoinensis HOM05D003900 ORTHO05D005009 7.6e-64 249.6 290 44.5
HanXRQChr04g0120801 Helianthus annuus HOM05D003900 ORTHO05D005009 7.6e-64 249.6 355 42.3
Sc01g0003220 Simmondsia chinensis HOM05D003900 ORTHO05D005009 2.9e-63 247.7 360 41.7
TWI23G0979 Tripterygium wilfordii HOM05D003900 ORTHO05D005009 2.9e-63 247.7 320 44.4
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 6.4e-63 246.5 342 41.8
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 6.4e-63 246.5 361 41.6
MD07G1131300 Malus domestica HOM05D003900 ORTHO05D005009 6.4e-63 246.5 326 43.3
Lsat_1_v5_gn_7_2720 Lactuca sativa HOM05D003900 ORTHO05D005009 3.2e-62 244.2 353 40.5
Ah.15g096610 Amaranthus hybridus HOM05D003900 ORTHO05D005009 5.4e-62 243.4 324 43.2
CiPaw.01G067200 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.2e-61 242.3 341 41.1
CSS0000093 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 2.7e-61 241.1 323 42.4
CSS0016355 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 2.7e-61 241.1 323 42.4
vmacro13229 Vaccinium macrocarpon HOM05D003900 ORTHO05D005009 3.0e-60 237.7 326 39.6
AUR62004412 Chenopodium quinoa HOM05D003900 ORTHO05D005009 1.1e-59 235.7 333 39.6
Potri.014G090400 Populus trichocarpa HOM05D003900 ORTHO05D005009 3.3e-59 234.2 350 41.1
Thhalv10022571m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 1.6e-58 231.9 342 41.2
Sabra14G0065500 Salix brachista HOM05D003900 ORTHO05D005009 2.1e-58 231.5 337 40.4
CARHR171850 Cardamine hirsuta HOM05D003900 ORTHO05D005009 2.8e-58 231.1 342 40.9
RcHm_v2.0_Chr1g0357681 Rosa chinensis HOM05D003900 ORTHO05D005009 3.6e-58 230.7 334 42.2
Manes.01G252300 Manihot esculenta HOM05D003900 ORTHO05D005009 6.2e-58 229.9 340 39.4
Prupe.2G177500 Prunus persica HOM05D003900 ORTHO05D005009 2.4e-57 228.0 320 41.9
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 4.0e-57 227.3 342 40.4
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 4.0e-57 227.3 342 40.4
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 5.3e-57 226.9 342 40.4
RcHm_v2.0_Chr7g0228211 Rosa chinensis HOM05D003900 ORTHO05D005009 6.9e-57 226.5 333 40.2
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 9.0e-57 226.1 342 38.9
EL10Ac1g00355 Beta vulgaris HOM05D003900 ORTHO05D005009 2.0e-56 224.9 333 38.7
Oeu015216.1 Olea europaea HOM05D003900 ORTHO05D005009 3.4e-56 224.2 198 55.1
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 4.5e-56 223.8 342 41.2
Thhalv10001319m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 9.9e-56 222.6 344 41.0
Sp4g28170 Schrenkiella parvula HOM05D003900 ORTHO05D005009 9.9e-56 222.6 343 40.2
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 1.3e-55 222.2 338 39.3
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 2.9e-55 221.1 289 41.5
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 4.9e-55 220.3 342 39.5
THA.LOC104817316 Tarenaya hassleriana HOM05D003900 ORTHO05D005009 4.9e-55 220.3 345 39.7
COL.COLO4_12777 Corchorus olitorius HOM05D003900 ORTHO05D005009 2.4e-54 218.0 278 42.1
MD01G1071400 Malus domestica HOM05D003900 ORTHO05D005009 2.4e-54 218.0 223 49.8
FAN04G0755 Fragaria x ananassa HOM05D003900 ORTHO05D005009 7.1e-54 216.5 337 38.6
BcaB02g07375 Brassica carinata HOM05D003900 ORTHO05D005009 9.3e-54 216.1 341 39.6
FvH4_5g32150 Fragaria vesca HOM05D003900 ORTHO05D005009 1.2e-53 215.7 324 39.5
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 1.6e-53 215.3 340 38.8
Aa31LG1G27520 Aethionema arabicum HOM05D003900 ORTHO05D005009 7.9e-53 213.0 342 38.6
BcaC08g45129 Brassica carinata HOM05D003900 ORTHO05D005009 7.9e-53 213.0 341 39.6
Lj4g0005982 Lotus japonicus HOM05D003900 ORTHO05D005009 7.9e-53 213.0 319 40.4
C06p27530 Brassica napus HOM05D003900 ORTHO05D005009 3.0e-52 211.1 341 39.3
BolC6t37920H Brassica oleracea HOM05D003900 ORTHO05D005009 3.0e-52 211.1 341 39.3
AUR62022618 Chenopodium quinoa HOM05D003900 ORTHO05D005009 3.9e-52 210.7 339 37.8
Duzib133G1046 Durio zibethinus HOM05D003900 ORTHO05D005009 3.9e-52 210.7 356 37.6
FvH4_5g03011 Fragaria vesca HOM05D003900 ORTHO05D005009 1.5e-51 208.8 335 38.5
A07p25540 Brassica napus HOM05D003900 ORTHO05D005009 1.3e-50 205.7 341 39.0
FAN03G2211 Fragaria x ananassa HOM05D003900 ORTHO05D005009 6.2e-50 203.4 333 37.8
VMungo0251G1173 Vigna mungo HOM05D003900 ORTHO05D005009 6.2e-50 203.4 342 37.1
BraA07t30195Z Brassica rapa HOM05D003900 ORTHO05D005009 1.4e-49 202.2 344 38.4
DCAR_025213 Daucus carota HOM05D003900 ORTHO05D005009 4.0e-49 200.7 356 37.1
FvH4_7g15360 Fragaria vesca HOM05D003900 ORTHO05D005009 6.9e-49 199.9 333 37.8
MBI11_g19575_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 9.0e-49 199.5 335 39.4
PGR142G0969 Punica granatum HOM05D003900 ORTHO05D005009 9.0e-49 199.5 342 36.3
FAN10G3614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.2e-48 199.1 301 38.5
Phvul.002G326200 Phaseolus vulgaris HOM05D003900 ORTHO05D005009 2.6e-48 198.0 322 37.3
Dinv32521 Davidia involucrata HOM05D003900 ORTHO05D005009 8.4e-47 193.0 195 48.7
FAN06G2614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 8.4e-47 193.0 331 37.5
FAN06G4981 Fragaria x ananassa HOM05D003900 ORTHO05D005009 4.2e-46 190.7 331 37.2
Eucgr.E00097 Eucalyptus grandis HOM05D003900 ORTHO05D005009 2.7e-45 188.0 356 37.1
FAN01G0431 Fragaria x ananassa HOM05D003900 ORTHO05D005009 7.9e-45 186.4 220 43.6
Medtr8g098755 Medicago truncatula HOM05D003900 ORTHO05D005009 1.8e-44 185.3 203 44.3
Actinidia20162 Actinidia chinensis HOM05D003900 ORTHO05D005009 1.1e-43 182.6 198 46.0
Ciclev10019067m.g Citrus clementina HOM05D003900 ORTHO05D005009 1.1e-43 182.6 334 35.9
arahy.Tifrunner.gnm1.ann1.U9H0N8 Arachis hypogaea HOM05D003900 ORTHO05D005009 2.1e-42 178.3 361 34.1
FAN06G0440 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.1e-42 178.3 208 44.2
CsaV3_7G025780 Cucumis sativus L. HOM05D003900 ORTHO05D005009 3.7e-42 177.6 206 42.7
MELO3C029134.2 Cucumis melo HOM05D003900 ORTHO05D005009 1.1e-41 176.0 213 41.3
Psat7g005640 Pisum sativum HOM05D003900 ORTHO05D005009 1.8e-41 175.3 198 42.9
Sed0017189 Sechium edule HOM05D003900 ORTHO05D005009 2.4e-41 174.9 206 44.2
TPR.G2949 Trifolium pratense HOM05D003900 ORTHO05D005009 5.3e-41 173.7 204 43.1
ClCG09G009150 Citrullus lanatus HOM05D003900 ORTHO05D005009 9.0e-41 172.9 209 41.6
arahy.Tifrunner.gnm1.ann1.K45FBX Arachis hypogaea HOM05D003900 ORTHO05D005009 1.5e-40 172.2 361 33.5
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 2.0e-40 171.8 208 39.9
Cfa003873 Carpinus fangiana HOM05D003900 ORTHO05D005009 1.0e-39 169.5 345 35.4
Lalb_Chr04g0259301 Lupinus albus HOM05D003900 ORTHO05D005009 1.0e-39 169.5 343 35.0
RcHm_v2.0_Chr3g0468501 Rosa chinensis HOM05D003900 ORTHO05D005009 1.0e-39 169.5 333 35.4
ATR0721G158 Amborella trichopoda HOM05D003900 ORTHO05D005009 1.3e-39 169.1 250 41.6
Glyma.16G031800 Glycine max HOM05D003900 ORTHO05D005009 1.3e-39 169.1 325 34.8
PSO266G0010 Papaver somniferum HOM05D003900 ORTHO05D005009 3.2e-38 164.5 259 34.4
ECA236G1505 Erigeron canadensis HOM05D003900 ORTHO05D005009 2.5e-35 154.8 209 38.8
Aqoxy7G01955 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 9.7e-35 152.9 414 30.9
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 2.8e-34 151.4 270 34.1
FAN10G1060 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.3e-33 147.1 301 32.9
HPP92_011504 Vanilla planifolia HOM05D003900 ORTHO05D005009 1.2e-32 146.0 304 32.6
RcHm_v2.0_Chr5g0017031 Rosa chinensis HOM05D003900 ORTHO05D005009 3.4e-32 144.4 154 47.4
CARHR141390 Cardamine hirsuta HOM05D003900 ORTHO05D005009 1.7e-31 142.1 236 36.0
Ca_17228_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005009 2.3e-28 131.7 196 37.8
FAN18G4460 Fragaria x ananassa HOM05D003900 ORTHO05D005009 4.1e-25 120.9 223 32.7
MBI11_g19576_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 6.9e-25 120.2 268 33.6
CAN.G853.45 Capsicum annuum HOM05D003900 ORTHO05D005009 2.0e-24 118.6 149 42.3
VMungo0251G0997 Vigna mungo HOM05D003900 ORTHO05D005009 6.1e-21 107.1 169 36.1
RcHm_v2.0_Chr7g0228291 Rosa chinensis HOM05D003900 ORTHO05D005009 8.8e-20 103.2 87 57.5
FAN18G1403 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.1e-19 102.8 96 50.0
CAN.G430.2 Capsicum annuum HOM05D003900 ORTHO05D005009 1.5e-19 102.4 115 48.7
Medtr3g088810 Medicago truncatula HOM05D003900 ORTHO05D005009 7.4e-19 100.1 136 40.4
CAN.G874.71 Capsicum annuum HOM05D003900 ORTHO05D005009 8.2e-18 96.7 117 41.0
CAN.G1005.1 Capsicum annuum HOM05D003900 ORTHO05D005009 2.0e-16 92.0 106 46.2
SEGI_36720 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.2e-13 82.8 240 26.7
SEGI_36951 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 4.7e-13 80.9 147 32.7
CAN.G609.3 Capsicum annuum HOM05D003900 ORTHO05D005009 2.6e-11 75.1 255 25.9
SEGI_22559 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 2.6e-11 75.1 100 37.0
CAN.G460.4 Capsicum annuum HOM05D003900 ORTHO05D005009 4.4e-11 74.3 102 37.3
SEGI_18390 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 9.7e-11 73.2 212 26.9
SEGI_08205 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 4.8e-10 70.9 93 37.6
SEGI_28461 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 8.2e-10 70.1 128 32.0
Aqoxy4G00899 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 2.4e-09 68.6 241 27.4
Ca_00621_v3 Cicer arietinum L. HOM05D000891 ORTHO05D000761 1.2e-08 66.2 275 22.5
SMO144G0067 Selaginella moellendorffii HOM05D043551 ORTHO05D050874 2.6e-08 65.1 210 28.6
SEGI_07919 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 2.6e-08 65.1 70 40.0
CiPaw.09G023000 Carya illinoinensis HOM05D006596 ORTHO05D008497 4.5e-08 64.3 203 20.2
SEGI_03438 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 7.7e-08 63.5 89 36.0
TPR.G7638 Trifolium pratense HOM05D000891 ORTHO05D000761 7.7e-08 63.5 311 23.5
BcaB03g12377 Brassica carinata HOM05D000891 ORTHO05D000761 1.3e-07 62.8 207 25.6
Sed0016136 Sechium edule HOM05D006694 ORTHO05D008240 1.7e-07 62.4 156 28.2
AL7G14330 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 2.2e-07 62.0 208 22.1
Sp7g34340 Schrenkiella parvula HOM05D000891 ORTHO05D000761 2.2e-07 62.0 204 23.0
CARHR245040 Cardamine hirsuta HOM05D000891 ORTHO05D000761 2.9e-07 61.6 208 21.6
Nitab4.5_0000201g0210 Nicotiana tabacum HOM05D003039 ORTHO05D008410 2.9e-07 61.6 287 24.0
SMO118G0170 Selaginella moellendorffii HOM05D043551 ORTHO05D050874 2.9e-07 61.6 162 29.6
TWI36G0656 Tripterygium wilfordii HOM05D000001 ORTHO05D010426 2.9e-07 61.6 227 22.9
BcaC01g00449 Brassica carinata HOM05D000891 ORTHO05D000761 5.0e-07 60.8 207 24.6
SEGI_13780 Sequoiadendron giganteum HOM05D001782 ORTHO05D001565 5.0e-07 60.8 65 40.0
C03p79970 Brassica napus HOM05D000891 ORTHO05D000761 6.5e-07 60.5 207 24.2
BolC3t20249H Brassica oleracea HOM05D000891 ORTHO05D000761 6.5e-07 60.5 207 24.2
CANSAT01G2464 Cannabis sativa HOM05D007486 ORTHO05D003673 8.5e-07 60.1 346 26.0
Cfa013277 Carpinus fangiana HOM05D007251 ORTHO05D009266 8.5e-07 60.1 184 25.5
BraA08t34190Z Brassica rapa HOM05D000891 ORTHO05D000761 1.1e-06 59.7 207 24.2
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.1e-06 59.7 112 32.1
Lsat_1_v5_gn_4_139140 Lactuca sativa HOM05D004783 ORTHO05D005581 1.5e-06 59.3 214 23.8
Zm00001eb280170 Zea mays HOM05D003900 ORTHO05D005009 1.9e-06 58.9 120 30.0
A08p22340 Brassica napus HOM05D000891 ORTHO05D000761 2.5e-06 58.5 207 24.2
CSS0037549 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 2.5e-06 58.5 206 22.3
CANSAT01G2277 Cannabis sativa HOM05D007486 ORTHO05D003673 2.5e-06 58.5 330 26.1
CAN.G1005.2 Capsicum annuum HOM05D003900 ORTHO05D005009 2.5e-06 58.5 47 59.6
AT3G61360 Arabidopsis thaliana HOM05D003039 ORTHO05D008410 3.2e-06 58.2 107 33.6
MSTRG.20959 Avicennia marina HOM05D001779 ORTHO05D001753 3.2e-06 58.2 164 27.4
CDE12G0140 Ceratophyllum demersum HOM05D001779 ORTHO05D001753 3.2e-06 58.2 162 27.8
Lsat_1_v5_gn_9_88941 Lactuca sativa HOM05D003039 ORTHO05D008410 3.2e-06 58.2 164 28.7
Lj1P662T20 Lonicera japonica HOM05D004783 ORTHO05D005581 3.2e-06 58.2 214 22.4
AL5G43620 Arabidopsis lyrata HOM05D003039 ORTHO05D008410 4.2e-06 57.8 107 33.6
CARHR141380 Cardamine hirsuta HOM05D003900 ORTHO05D005009 4.2e-06 57.8 72 44.4
Haze_21751 Corylus avellana HOM05D007251 ORTHO05D009266 4.2e-06 57.8 183 25.7
Ciclev10005379m.g Citrus clementina HOM05D000424 ORTHO05D000355 7.2e-06 57.0 98 27.6
SEGI_07366 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 9.4e-06 56.6 81 37.0
SEGI_34583 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 9.4e-06 56.6 81 37.0


User provided reference genes

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