Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 2.1e-272 941.8 483 100.0
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 1.2e-243 846.3 483 89.4
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 4.4e-238 827.8 476 88.0
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 4.7e-224 781.2 489 81.2
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 6.1e-224 780.8 486 82.3
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 3.0e-223 778.5 486 80.9
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 1.5e-222 776.2 480 81.7
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 2.6e-222 775.4 439 87.2
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 6.3e-221 770.8 486 80.7
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 8.2e-221 770.4 433 89.4
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 4.1e-220 768.1 438 86.5
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 4.1e-220 768.1 490 80.0
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 9.1e-220 766.9 459 84.5
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 4.5e-219 764.6 490 80.2
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 7.7e-219 763.8 495 80.0
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 7.7e-219 763.8 441 86.8
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 1.0e-218 763.5 486 80.5
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 1.3e-218 763.1 491 79.4
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 1.3e-218 763.1 487 80.7
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 1.3e-218 763.1 489 80.6
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 1.7e-218 762.7 485 80.4
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 2.2e-218 762.3 490 80.4
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 2.9e-218 761.9 495 79.8
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 6.5e-218 760.8 492 79.9
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 1.5e-217 759.6 492 79.5
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 2.5e-217 758.8 441 87.1
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 4.2e-217 758.1 450 84.0
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 5.5e-217 757.7 484 80.8
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 7.2e-217 757.3 491 79.8
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 1.6e-216 756.1 439 86.1
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.1e-216 755.7 469 81.2
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 2.7e-216 755.4 491 79.6
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 3.6e-216 755.0 435 86.4
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 8.0e-216 753.8 491 79.4
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 1.0e-215 753.4 434 86.9
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 2.3e-215 752.3 441 85.9
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 2.3e-215 752.3 431 86.8
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 3.0e-215 751.9 491 77.6
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 4.0e-215 751.5 434 86.2
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 6.8e-215 750.7 440 84.3
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 6.8e-215 750.7 485 79.4
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 1.2e-214 750.0 439 85.2
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.2e-214 750.0 440 85.5
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 1.2e-214 750.0 484 79.3
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 1.2e-214 750.0 441 85.5
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 4.4e-214 748.0 439 85.2
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 5.7e-214 747.7 432 86.6
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 7.5e-214 747.3 491 78.2
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 9.8e-214 746.9 435 85.3
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 9.8e-214 746.9 436 84.9
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 2.8e-213 745.3 442 84.4
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 3.7e-213 745.0 490 77.3
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 3.7e-213 745.0 437 84.4
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 3.7e-213 745.0 436 85.6
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 3.7e-213 745.0 485 78.8
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 3.7e-213 745.0 449 82.9
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 6.3e-213 744.2 445 83.1
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 8.3e-213 743.8 441 85.0
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 1.8e-212 742.7 439 85.0
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 1.8e-212 742.7 437 85.4
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 2.4e-212 742.3 462 81.4
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 3.1e-212 741.9 436 84.6
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 4.1e-212 741.5 482 79.3
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 1.6e-211 739.6 444 83.3
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.6e-211 739.6 465 79.8
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 2.0e-211 739.2 432 84.3
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 2.0e-211 739.2 440 82.5
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 3.5e-211 738.4 431 85.6
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 5.9e-211 737.6 437 84.0
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.0e-210 736.9 432 84.0
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 1.7e-210 736.1 470 81.3
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 3.8e-210 734.9 440 83.2
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 5.0e-210 734.6 486 77.6
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 8.6e-210 733.8 440 84.3
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 8.6e-210 733.8 439 83.6
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 2.5e-209 732.3 438 83.1
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 3.3e-209 731.9 462 80.1
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 3.3e-209 731.9 460 80.0
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 5.5e-209 731.1 437 82.6
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 5.5e-209 731.1 450 82.2
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 7.2e-209 730.7 502 75.9
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 9.5e-209 730.3 435 83.2
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 9.5e-209 730.3 435 83.2
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 1.6e-208 729.6 475 78.3
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 1.6e-208 729.6 482 77.2
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 2.1e-208 729.2 458 79.7
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 2.8e-208 728.8 458 79.7
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 2.8e-208 728.8 435 83.4
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 4.7e-208 728.0 475 78.3
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 6.1e-208 727.6 441 82.1
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 8.0e-208 727.2 435 83.0
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 8.0e-208 727.2 435 83.0
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 1.4e-207 726.5 458 80.8
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 1.8e-207 726.1 435 83.4
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 1.8e-207 726.1 452 81.9
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 5.2e-207 724.5 435 82.8
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 8.9e-207 723.8 435 82.8
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 8.9e-207 723.8 437 82.8
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.5e-206 723.0 435 82.5
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 7.5e-206 720.7 441 81.0
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 7.5e-206 720.7 441 81.0
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 7.5e-206 720.7 434 82.7
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.7e-205 719.5 460 78.3
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 8.3e-205 717.2 489 76.1
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 1.8e-204 716.1 441 80.5
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.0e-202 710.3 486 75.9
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 8.6e-202 707.2 492 75.2
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 1.5e-201 706.4 446 79.8
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 2.5e-201 705.7 444 80.0
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 3.3e-201 705.3 485 75.3
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.2e-200 703.4 437 79.4
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.3e-199 699.1 486 74.9
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 2.2e-197 692.6 486 74.9
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 3.2e-196 688.7 455 75.6
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 5.4e-196 688.0 413 82.6
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 3.6e-192 675.2 387 85.8
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 6.6e-186 654.4 435 73.1
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 2.6e-182 642.5 439 74.9
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 9.9e-182 640.6 434 73.7
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.3e-181 640.2 432 73.1
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 1.2e-179 633.6 465 69.7
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 1.6e-176 623.2 427 73.8
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 6.6e-170 601.3 430 70.2
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 2.5e-169 599.4 427 70.5
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 2.0e-166 589.7 357 82.6
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 1.9e-164 583.2 427 68.4
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.8e-159 566.6 480 64.4
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 2.4e-156 556.2 428 67.1
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.2e-149 533.1 318 84.0
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 6.0e-147 525.0 315 83.8
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 2.0e-121 440.3 317 73.8
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 1.7e-117 427.2 292 76.4
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 3.8e-117 426.0 258 82.9
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 5.5e-116 422.2 330 67.3
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 9.4e-116 421.4 435 51.0
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 9.7e-113 411.4 283 74.2
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 8.2e-112 408.3 233 85.8
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 5.5e-108 395.6 405 60.2
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 1.2e-99 367.9 249 77.9
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 1.5e-89 334.3 201 85.6
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 1.1e-84 318.2 182 85.7
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 1.5e-84 317.8 177 86.4
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 1.7e-77 294.3 182 82.4
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 3.1e-74 283.5 227 67.4
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 1.5e-68 264.6 422 41.2
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 3.3e-68 263.5 217 65.9
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 6.2e-67 259.2 223 64.6
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 4.0e-66 256.5 217 64.5
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 2.9e-64 250.4 220 63.2
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 9.2e-63 245.4 289 47.1
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 3.3e-60 236.9 215 60.5
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 4.7e-59 233.0 122 91.8
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.8e-50 204.5 116 86.2
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 6.2e-43 179.5 188 56.9
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.9e-40 170.6 95 86.3
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 1.0e-37 162.2 88 87.5
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 2.5e-28 131.0 156 48.1
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 6.2e-27 126.3 127 48.8
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 3.4e-25 120.6 77 75.3
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 8.4e-24 115.9 212 41.5
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 5.5e-23 113.2 131 50.4
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 1.2e-22 112.1 67 83.6
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 7.4e-20 102.8 125 48.8
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 2.8e-19 100.9 64 79.7
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 2.2e-16 91.3 57 78.9
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 2.9e-16 90.9 75 61.3
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 9.4e-15 85.9 45 95.6
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 1.6e-14 85.1 66 66.7
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 2.5e-12 77.8 48 81.2
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 7.4e-12 76.3 49 77.6
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 2.2e-11 74.7 69 62.3
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 2.8e-11 74.3 46 80.4
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 1.5e-09 68.6 37 91.9
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 1.5e-09 68.6 68 60.3
Lsat_1_v5_gn_3_28400 Lactuca sativa HOM05D001423 ORTHO05D048396 9.4e-07 59.3 71 49.3
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 9.4e-07 59.3 69 55.1
arahy.Tifrunner.gnm1.ann1.E8SK3Y Arachis hypogaea HOM05D004109 ORTHO05D084058 4.7e-06 57.0 34 79.4


User provided reference genes

Program Settings