Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 0.0e+00 1094.0 537 100.0
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 1.9e-306 1055.0 537 94.8
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 3.3e-303 1044.3 537 93.5
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 2.0e-300 1035.0 537 93.7
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 8.7e-288 993.0 535 88.4
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 1.8e-285 985.3 535 88.2
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 5.3e-285 983.8 535 88.8
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 7.6e-284 979.9 537 87.3
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 1.0e-283 979.5 535 88.0
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 1.0e-283 979.5 535 88.2
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 4.9e-283 977.2 535 87.7
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 3.2e-274 948.0 535 84.3
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 7.1e-274 946.8 539 85.0
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 7.1e-274 946.8 535 84.7
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 2.1e-273 945.3 534 84.5
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 4.6e-273 944.1 535 83.6
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 1.3e-272 942.6 535 83.9
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 1.8e-272 942.2 539 84.4
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 2.5e-271 938.3 537 82.3
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 3.3e-271 937.9 535 83.0
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 4.3e-271 937.6 535 83.4
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 1.3e-270 936.0 535 83.0
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 3.7e-270 934.5 535 83.0
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 8.2e-270 933.3 535 83.0
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 1.1e-269 932.9 535 82.8
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 1.4e-269 932.6 535 83.0
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 3.1e-269 931.4 535 83.0
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 4.1e-269 931.0 535 82.6
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 5.3e-269 930.6 535 83.2
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 9.0e-269 929.9 535 83.0
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.0e-268 928.7 535 82.8
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 4.5e-268 927.5 535 82.6
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 4.5e-268 927.5 535 82.6
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.0e-267 926.4 535 82.4
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 1.3e-267 926.0 535 81.7
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 1.7e-267 925.6 535 81.7
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.7e-267 925.6 542 82.1
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 2.2e-267 925.2 535 81.9
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.9e-267 924.9 535 82.6
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 3.8e-267 924.5 535 82.1
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 3.8e-267 924.5 535 82.1
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 8.5e-267 923.3 535 82.4
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.1e-266 922.9 535 82.2
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.1e-266 922.9 535 82.4
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 2.5e-266 921.8 536 81.7
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 4.2e-266 921.0 536 81.9
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 7.2e-266 920.2 529 82.6
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 7.2e-266 920.2 535 81.9
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 9.4e-266 919.8 535 82.1
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 1.2e-265 919.5 536 81.9
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 7.9e-265 916.8 535 81.1
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 1.8e-264 915.6 529 81.3
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 3.0e-264 914.8 535 81.5
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 3.9e-264 914.4 535 81.9
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 6.7e-264 913.7 535 81.5
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.5e-263 912.5 535 80.4
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.5e-263 912.5 530 81.1
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 4.3e-263 911.0 536 79.7
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 4.3e-263 911.0 540 79.6
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 5.7e-263 910.6 536 81.9
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 1.3e-262 909.4 529 81.9
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 3.7e-262 907.9 530 81.9
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 3.7e-262 907.9 535 80.6
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 4.8e-262 907.5 537 81.0
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 4.1e-261 904.4 536 79.3
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 3.4e-260 901.4 535 80.9
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 1.0e-259 899.8 535 80.2
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 1.3e-259 899.4 535 79.6
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 1.3e-259 899.4 530 80.9
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 1.7e-259 899.0 530 80.8
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 3.8e-259 897.9 536 78.9
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 6.5e-259 897.1 534 79.4
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 2.5e-258 895.2 535 79.3
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 5.5e-258 894.0 530 80.0
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 7.2e-258 893.6 530 80.2
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 9.4e-258 893.3 530 80.4
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 9.4e-258 893.3 494 87.7
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 7.9e-257 890.2 533 79.4
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 1.0e-256 889.8 529 79.8
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 1.8e-256 889.0 530 79.8
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 1.8e-256 889.0 531 80.2
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.8e-256 889.0 537 78.0
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 1.8e-256 889.0 533 79.0
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 2.3e-256 888.6 535 78.3
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 3.0e-256 888.3 529 79.6
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 5.1e-256 887.5 529 79.8
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 8.8e-256 886.7 535 77.9
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 2.6e-255 885.2 535 79.1
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 1.7e-254 882.5 530 79.8
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 2.2e-254 882.1 530 79.8
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 4.8e-254 880.9 535 77.6
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 1.4e-253 879.4 531 79.7
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 4.1e-253 877.9 536 78.5
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 5.3e-253 877.5 536 78.5
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 1.5e-252 875.9 536 78.2
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 1.5e-252 875.9 536 78.4
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 1.5e-252 875.9 536 78.9
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 3.5e-252 874.8 528 78.4
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 5.9e-252 874.0 530 77.9
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 3.6e-249 864.8 531 78.0
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 8.0e-249 863.6 529 76.7
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 1.4e-248 862.8 530 77.7
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 7.4e-247 857.1 682 64.2
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 2.2e-246 855.5 550 75.1
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 2.8e-246 855.1 498 83.1
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.4e-245 852.8 550 74.7
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 4.1e-245 851.3 533 77.9
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 2.0e-244 849.0 528 76.1
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 1.1e-242 843.2 528 76.3
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 9.4e-242 840.1 535 76.4
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 8.0e-241 837.0 493 81.7
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 6.3e-238 827.4 666 64.0
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 3.0e-232 808.5 539 72.4
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 1.0e-227 793.5 530 71.9
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 2.3e-227 792.3 559 68.3
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 8.0e-225 783.9 525 69.9
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 2.0e-223 779.2 527 69.1
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 1.2e-220 770.0 532 68.6
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 6.6e-219 764.2 529 67.9
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 1.2e-212 743.4 536 69.6
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 3.3e-210 735.3 527 65.5
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 7.5e-207 724.2 441 80.0
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 1.6e-204 716.5 527 65.1
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 4.3e-202 708.4 404 81.7
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 8.4e-198 694.1 525 64.0
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 7.6e-191 671.0 497 65.0
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 9.9e-191 670.6 374 84.5
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 4.6e-180 635.2 490 66.7
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 8.1e-169 597.8 422 70.1
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 5.0e-158 562.0 710 48.6
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 8.5e-134 481.5 544 49.8
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 7.2e-133 478.4 299 76.3
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 5.5e-125 452.2 312 71.2
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.7e-121 440.7 531 47.5
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 7.8e-103 378.6 411 49.9
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 5.6e-101 372.5 262 70.2
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 7.6e-74 282.3 184 72.8
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 9.3e-72 275.4 148 88.5
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 2.5e-61 240.7 148 75.7
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 4.1e-43 180.3 166 54.8
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 6.9e-43 179.5 133 63.2
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 2.5e-37 161.0 104 74.0
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 1.6e-36 158.3 91 80.2
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 8.2e-36 156.0 110 71.8
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 1.2e-31 142.1 88 78.4
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 1.8e-19 101.7 97 57.7
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 2.5e-16 91.3 46 89.1
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 1.2e-13 82.4 45 84.4
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 2.0e-13 81.6 64 59.4
Ca_12957_v3 Cicer arietinum L. HOM05D004282 ORTHO05D149096 5.7e-13 80.1 49 75.5
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 1.3e-12 79.0 44 84.1
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 1.3e-12 79.0 44 84.1
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 7.7e-10 69.7 48 75.0
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 7.7e-10 69.7 53 62.3
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 1.0e-09 69.3 83 56.6
Ca_07210_v3 Cicer arietinum L. HOM05D004282 ORTHO05D147921 2.9e-09 67.8 49 69.4
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 8.5e-09 66.2 40 77.5
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 8.5e-09 66.2 40 77.5
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 8.5e-09 66.2 40 77.5
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 2.7e-07 61.2 41 68.3
EL10Ac3g07448 Beta vulgaris HOM05D003983 ORTHO05D004562 3.6e-07 60.8 211 25.6
A03p47680 Brassica napus HOM05D004282 ORTHO05D017169 1.0e-06 59.3 37 75.7
BraA09t37854Z Brassica rapa HOM05D004282 ORTHO05D017169 1.0e-06 59.3 37 75.7
AUR62020869 Chenopodium quinoa HOM05D003983 ORTHO05D004562 3.0e-06 57.8 211 25.1
Mapoly0037s0136 Marchantia polymorpha HOM05D003983 ORTHO05D004562 3.0e-06 57.8 218 26.6
Ah.04g149470 Amaranthus hybridus HOM05D003983 ORTHO05D004562 4.0e-06 57.4 206 26.2
PRCOL_00000049 Prasinoderma coloniale HOM05D003983 ORTHO05D004562 5.2e-06 57.0 197 25.4


User provided reference genes

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