Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 5.1e-246 854.0 438 100.0
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 1.8e-222 775.8 441 91.6
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 8.3e-220 766.9 442 91.2
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 2.8e-215 751.9 440 89.8
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.3e-212 743.0 466 85.4
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.6e-202 709.5 438 85.2
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 7.3e-200 700.7 448 83.3
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 1.6e-199 699.5 448 82.8
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 5.2e-198 694.5 438 81.3
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 1.5e-197 693.0 438 81.1
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 1.2e-194 683.3 453 81.7
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 2.8e-191 672.2 442 80.3
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 4.7e-191 671.4 440 80.0
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 9.2e-187 657.1 446 76.7
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 1.5e-181 639.8 448 75.9
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 1.5e-181 639.8 456 74.6
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 3.4e-181 638.6 448 75.4
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 3.8e-180 635.2 455 74.5
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 4.9e-180 634.8 448 74.8
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 8.4e-180 634.0 457 74.2
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.4e-179 633.3 458 73.4
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 1.9e-179 632.9 457 74.2
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 3.2e-179 632.1 455 74.9
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 2.1e-178 629.4 453 72.8
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 2.7e-178 629.0 456 75.0
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 6.0e-178 627.9 461 72.9
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 6.6e-177 624.4 449 73.7
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 6.6e-177 624.4 461 72.5
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 4.0e-174 615.1 452 71.7
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 1.5e-173 613.2 455 72.3
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 3.4e-173 612.1 450 72.0
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 5.8e-173 611.3 454 71.6
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 4.9e-172 608.2 463 71.5
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 2.4e-171 605.9 453 72.0
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 1.6e-170 603.2 454 72.5
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 4.6e-170 601.7 448 71.4
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 6.0e-170 601.3 456 71.7
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.0e-169 600.5 452 71.5
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 1.7e-169 599.7 456 72.1
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 8.7e-169 597.4 452 70.6
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 1.9e-168 596.3 447 71.4
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 1.1e-166 590.5 421 73.2
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 1.1e-166 590.5 450 70.4
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.8e-166 589.7 460 70.9
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.8e-166 589.7 460 70.0
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 4.0e-166 588.6 449 71.7
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.0e-165 586.3 446 70.6
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 2.0e-165 586.3 446 70.9
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 2.6e-165 585.9 450 70.9
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 4.5e-165 585.1 455 69.5
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 4.5e-165 585.1 460 69.3
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 7.6e-165 584.3 446 70.6
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 7.6e-165 584.3 453 70.2
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 9.9e-165 583.9 446 69.7
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 1.3e-164 583.6 449 71.3
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 2.2e-164 582.8 453 70.2
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 1.4e-163 580.1 447 70.5
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 2.4e-163 579.3 462 68.8
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 3.2e-163 578.9 456 69.7
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 1.6e-162 576.6 466 67.8
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 2.1e-162 576.2 455 68.1
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 2.7e-162 575.9 452 69.7
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 3.5e-162 575.5 456 69.3
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 1.3e-161 573.5 446 68.4
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 1.3e-161 573.5 457 68.3
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 1.8e-161 573.2 451 69.8
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 1.8e-161 573.2 446 69.3
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 2.3e-161 572.8 463 67.8
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 8.7e-161 570.9 446 68.6
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.5e-160 570.1 456 68.4
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 7.4e-160 567.8 433 70.9
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 1.3e-159 567.0 427 71.0
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 1.6e-159 566.6 446 69.1
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 2.8e-159 565.8 398 74.6
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 3.7e-159 565.5 446 68.8
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 3.7e-159 565.5 453 67.3
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 9.9e-157 557.4 456 67.3
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 1.3e-156 557.0 455 66.6
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 1.3e-156 557.0 446 67.5
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 2.9e-156 555.8 415 71.1
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 5.5e-155 551.6 501 63.9
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 1.6e-154 550.1 433 69.3
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 2.1e-154 549.7 451 67.8
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 3.5e-154 548.9 452 67.9
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 1.0e-153 547.4 452 67.7
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 1.3e-153 547.0 435 67.8
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 1.8e-153 546.6 445 66.7
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 3.9e-153 545.4 445 66.5
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 6.7e-153 544.7 413 70.9
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 8.7e-153 544.3 445 66.5
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 4.3e-152 542.0 428 68.5
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 9.6e-152 540.8 446 65.5
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 2.8e-151 539.3 445 65.4
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 4.0e-150 535.4 449 66.4
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 1.5e-149 533.5 452 63.7
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 4.5e-149 531.9 453 64.2
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 7.6e-149 531.2 456 65.6
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 7.6e-149 531.2 471 63.7
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 1.7e-148 530.0 475 62.1
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 2.2e-148 529.6 453 62.3
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 2.9e-148 529.3 443 64.8
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 6.5e-148 528.1 453 63.6
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 7.1e-147 524.6 457 64.1
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 3.5e-146 522.3 456 62.9
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 5.3e-142 508.4 506 57.3
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 7.7e-141 504.6 452 62.6
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.0e-140 504.2 448 64.3
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 1.0e-140 504.2 460 62.4
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.2e-138 497.3 458 62.0
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 1.2e-138 497.3 451 61.4
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 3.0e-137 492.7 452 62.6
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 3.3e-136 489.2 467 60.2
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 1.1e-134 484.2 426 62.9
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 2.6e-133 479.6 371 69.0
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.1e-131 474.2 424 61.8
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 2.7e-130 469.5 399 64.7
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 7.9e-130 468.0 456 60.7
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 8.8e-129 464.5 415 63.9
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 9.1e-126 454.5 415 61.4
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 1.2e-122 444.1 484 56.8
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 6.3e-119 431.8 401 59.6
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 1.1e-115 421.0 456 55.5
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 2.7e-114 416.4 469 50.7
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 4.7e-114 415.6 343 66.8
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 2.1e-106 390.2 481 48.9
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 2.7e-106 389.8 343 61.2
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 1.0e-105 387.9 392 56.6
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.7e-103 380.6 509 45.0
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 1.6e-98 364.0 448 49.3
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 4.7e-98 362.5 491 43.8
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 5.9e-93 345.5 463 49.2
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 8.6e-92 341.7 248 69.8
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 6.1e-90 335.5 350 56.9
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 1.6e-82 310.8 345 54.8
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 6.8e-81 305.4 489 40.3
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 7.3e-75 285.4 396 41.4
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 4.7e-74 282.7 423 45.4
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 2.6e-72 276.9 517 35.4
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 1.7e-63 247.7 255 56.9
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 2.5e-59 233.8 245 60.4
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 6.9e-57 225.7 389 37.3
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 1.4e-54 218.0 176 64.8
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 3.1e-49 200.3 181 59.7
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 5.3e-49 199.5 181 60.2
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 5.3e-49 199.5 133 75.2
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 5.4e-46 189.5 175 57.7
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 2.7e-45 187.2 391 35.0
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 1.5e-43 181.4 263 40.7
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.4e-41 174.9 181 54.7
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 1.0e-31 142.1 129 56.6
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 9.3e-30 135.6 266 35.7
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 1.3e-28 131.7 142 50.0
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 9.7e-27 125.6 131 58.8
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 1.3e-26 125.2 92 65.2
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 2.0e-24 117.9 143 53.1
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 1.7e-23 114.8 157 48.4
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 1.7e-23 114.8 138 50.7
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 5.0e-23 113.2 63 79.4
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.1e-19 102.1 77 70.1
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 3.3e-19 100.5 168 47.0
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 2.2e-18 97.8 103 50.5
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 9.1e-17 92.4 61 70.5
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 1.2e-13 82.0 273 26.4
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 6.7e-12 76.3 109 40.4
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 8.8e-12 75.9 204 33.3
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 1.5e-11 75.1 55 72.7
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 6.3e-10 69.7 122 46.7
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 9.1e-09 65.9 43 76.7
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 1.1e-06 58.9 40 72.5
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 1.5e-06 58.5 42 64.3
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 1.5e-06 58.5 42 69.0
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.5e-06 57.8 32 84.4
SHI33154 Sapria himalayana HOM05D004146 ORTHO05D004843 2.5e-06 57.8 50 60.0


User provided reference genes

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