Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 5.2e-69 264.2 132 100.0
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 1.9e-47 192.6 129 76.7
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 6.2e-46 187.6 131 76.3
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 2.4e-45 185.7 135 74.8
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 2.9e-35 152.1 133 65.4
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 2.9e-35 152.1 140 62.9
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 3.8e-35 151.8 133 65.4
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 8.5e-35 150.6 138 64.5
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 7.9e-33 144.1 136 60.3
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 1.8e-32 142.9 141 61.7
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 4.3e-31 138.3 135 61.5
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.8e-29 132.9 131 58.0
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 9.1e-29 130.6 130 58.5
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 6.5e-27 124.4 131 58.0
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 6.5e-27 124.4 131 56.5
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 6.5e-27 124.4 129 53.5
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.1e-26 123.6 132 57.6
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 2.5e-26 122.5 129 56.6
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 3.2e-26 122.1 136 53.7
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 5.5e-26 121.3 131 55.0
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 9.4e-26 120.6 132 56.1
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 9.4e-26 120.6 131 56.5
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 9.4e-26 120.6 131 56.5
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 9.4e-26 120.6 131 56.5
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 9.4e-26 120.6 132 53.8
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 1.2e-25 120.2 137 52.6
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 1.2e-25 120.2 131 55.0
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 1.6e-25 119.8 132 54.5
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 2.7e-25 119.0 131 55.0
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 3.6e-25 118.6 131 55.7
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 3.6e-25 118.6 134 51.5
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 3.6e-25 118.6 128 51.6
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 4.7e-25 118.2 131 55.0
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 4.7e-25 118.2 129 57.4
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.0e-24 117.1 127 55.1
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 1.4e-24 116.7 135 50.4
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.4e-24 116.7 131 54.2
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 2.3e-24 115.9 131 52.7
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 2.3e-24 115.9 89 64.0
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 3.9e-24 115.2 132 53.8
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.1e-23 113.6 134 50.0
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.5e-23 113.2 119 52.9
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.5e-23 113.2 136 50.0
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 2.0e-23 112.8 130 51.5
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 7.4e-23 110.9 135 52.6
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 9.7e-23 110.5 127 52.0
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 1.3e-22 110.2 136 49.3
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.2e-22 109.4 131 51.1
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 2.2e-22 109.4 131 49.6
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 2.2e-22 109.4 133 51.1
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 2.8e-22 109.0 138 49.3
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 3.7e-22 108.6 129 51.9
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.8e-22 108.2 127 52.8
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 4.8e-22 108.2 131 50.4
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 6.3e-22 107.8 127 51.2
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 6.3e-22 107.8 132 50.0
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 8.2e-22 107.5 130 50.0
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.4e-21 106.7 131 48.9
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.4e-21 106.7 129 51.2
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.8e-21 106.3 130 50.8
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 2.4e-21 105.9 129 51.2
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 3.1e-21 105.5 134 48.5
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.1e-21 105.1 127 48.8
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 1.2e-20 103.6 129 49.6
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.5e-20 103.2 133 51.1
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.5e-20 103.2 98 57.1
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.4e-20 102.1 132 51.5
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.4e-20 102.1 137 51.8
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 3.4e-20 102.1 96 54.2
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.5e-20 101.7 135 47.4
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 5.9e-20 101.3 130 46.9
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 7.7e-20 100.9 132 46.2
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.0e-19 100.5 131 45.8
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 1.0e-19 100.5 131 50.4
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 2.2e-19 99.4 133 49.6
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 2.2e-19 99.4 129 48.8
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.9e-19 99.0 143 47.6
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 5.0e-19 98.2 138 44.2
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 6.5e-19 97.8 132 49.2
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 8.5e-19 97.4 130 47.7
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.4e-18 96.7 89 58.4
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.9e-18 96.3 130 51.5
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 4.2e-18 95.1 132 41.7
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 5.5e-18 94.7 92 56.5
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 7.2e-18 94.4 134 48.5
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 7.2e-18 94.4 127 45.7
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.6e-17 93.2 122 41.8
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 2.1e-17 92.8 133 44.4
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 2.1e-17 92.8 128 47.7
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 3.6e-17 92.0 130 41.5
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 3.6e-17 92.0 130 41.5
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 3.6e-17 92.0 130 41.5
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 3.6e-17 92.0 130 41.5
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 6.1e-17 91.3 130 44.6
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 6.1e-17 91.3 132 44.7
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 8.0e-17 90.9 133 42.9
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.0e-16 90.5 131 42.7
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.0e-16 90.5 134 41.8
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.4e-16 90.1 120 44.2
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 1.4e-16 90.1 132 43.2
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 1.8e-16 89.7 118 43.2
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 2.3e-16 89.4 91 53.8
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.3e-16 89.4 96 54.2
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 3.0e-16 89.0 101 53.5
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 5.2e-16 88.2 127 45.7
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 6.7e-16 87.8 120 40.8
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 6.7e-16 87.8 107 46.7
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 6.7e-16 87.8 127 44.9
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 6.7e-16 87.8 133 43.6
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 1.1e-15 87.0 127 44.9
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 1.1e-15 87.0 97 54.6
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 1.1e-15 87.0 97 54.6
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 1.1e-15 87.0 98 54.1
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.1e-15 87.0 109 49.5
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.5e-15 86.7 119 43.7
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.5e-15 86.7 131 40.5
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.0e-15 86.3 171 40.9
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.6e-15 85.9 95 50.5
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 2.6e-15 85.9 88 54.5
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 2.6e-15 85.9 132 43.2
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 3.3e-15 85.5 129 42.6
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 4.4e-15 85.1 88 51.1
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 4.4e-15 85.1 88 51.1
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 4.4e-15 85.1 127 40.9
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 4.4e-15 85.1 94 48.9
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 5.7e-15 84.7 133 39.8
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 5.7e-15 84.7 130 42.3
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 5.7e-15 84.7 132 40.9
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 5.7e-15 84.7 130 43.8
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 7.4e-15 84.3 132 40.9
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 7.4e-15 84.3 130 43.1
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 1.3e-14 83.6 127 44.1
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 1.3e-14 83.6 134 40.3
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.3e-14 83.6 92 47.8
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 1.7e-14 83.2 134 41.8
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.7e-14 83.2 129 39.5
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 2.2e-14 82.8 135 38.5
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 2.2e-14 82.8 135 41.5
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 2.2e-14 82.8 95 48.4
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.8e-14 82.4 128 46.1
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.8e-14 82.4 130 40.0
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 3.7e-14 82.0 128 40.6
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 3.7e-14 82.0 128 40.6
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 3.7e-14 82.0 127 38.6
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 3.7e-14 82.0 133 46.6
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 4.8e-14 81.6 88 54.5
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 6.3e-14 81.3 127 40.9
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 1.1e-13 80.5 88 55.7
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 1.4e-13 80.1 131 36.6
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 1.4e-13 80.1 131 36.6
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.4e-13 80.1 99 44.4
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.4e-13 80.1 102 48.0
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.4e-13 79.3 128 38.3
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.4e-13 79.3 88 51.1
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 4.1e-13 78.6 101 43.6
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 7.0e-13 77.8 96 45.8
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 7.0e-13 77.8 137 40.1
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 7.0e-13 77.8 105 44.8
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 9.1e-13 77.4 129 38.0
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.2e-12 77.0 84 48.8
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.6e-12 75.9 127 40.2
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.6e-12 75.9 126 44.4
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 4.5e-12 75.1 90 44.4
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 5.9e-12 74.7 97 44.3
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 5.9e-12 74.7 130 42.3
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 1.0e-11 73.9 115 44.3
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 3.8e-11 72.0 91 40.7
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 3.8e-11 72.0 140 39.3
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 3.8e-11 72.0 80 48.8
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 5.0e-11 71.6 99 42.4
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.5e-11 71.2 127 37.8
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.1e-10 70.5 88 45.5
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 2.5e-10 69.3 127 38.6
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 5.5e-10 68.2 116 40.5
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.2e-09 67.0 100 41.0
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 2.1e-09 66.2 121 38.0
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.0e-08 63.9 110 39.1
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 1.8e-08 63.2 88 39.8
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 1.8e-08 63.2 122 34.4
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.5e-07 60.1 122 40.2
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.0e-07 59.7 96 39.6
Nitab4.5_0000750g0030 Nicotiana tabacum HOM05D003592 ORTHO05D004208 8.2e-06 54.3 70 45.7


User provided reference genes

Program Settings