Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g105890 Medicago truncatula HOM05D007699 ORTHO05D009796 6.6e-60 233.8 114 100.0
Medtr3g084270 Medicago truncatula HOM05D007699 ORTHO05D009796 7.6e-16 87.4 58 74.1
Potri.011G103301 Populus trichocarpa HOM05D007699 ORTHO05D009796 7.6e-16 87.4 48 85.4
Hma1.2p1_0886F.1_g232660 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 9.9e-16 87.0 46 84.8
Hma1.2p1_0886F.1_g232685 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 9.9e-16 87.0 46 84.8
Prupe.7G080000 Prunus persica HOM05D007699 ORTHO05D009796 9.9e-16 87.0 40 97.5
Phvul.008G062500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 2.2e-15 85.9 45 86.7
A05p18230 Brassica napus HOM05D007699 ORTHO05D009796 2.9e-15 85.5 42 90.5
arahy.Tifrunner.gnm1.ann1.3C01L3 Arachis hypogaea HOM05D007699 ORTHO05D009796 3.8e-15 85.1 74 60.8
FAN18G1300 Fragaria x ananassa HOM05D005738 ORTHO05D007135 3.8e-15 85.1 50 80.0
FAN18G3749 Fragaria x ananassa HOM05D005738 ORTHO05D007135 3.8e-15 85.1 50 80.0
TPR.G12299 Trifolium pratense HOM05D007699 ORTHO05D009796 4.9e-15 84.7 41 92.7
TPR.G38695 Trifolium pratense HOM05D000020 ORTHO05D000543 4.9e-15 84.7 39 97.4
Phvul.001G066700 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 6.4e-15 84.3 46 82.6
FvH4_3g13700 Fragaria vesca HOM05D007699 ORTHO05D009796 8.4e-15 84.0 41 95.1
FAN11G1327 Fragaria x ananassa HOM05D007699 ORTHO05D009796 8.4e-15 84.0 59 72.9
Prupe.7G069600 Prunus persica HOM05D007699 ORTHO05D009796 8.4e-15 84.0 39 94.9
CARHR185520 Cardamine hirsuta HOM05D007699 ORTHO05D009796 1.1e-14 83.6 37 97.3
Potri.011G103401 Populus trichocarpa HOM05D007699 ORTHO05D009796 1.1e-14 83.6 75 57.3
Phvul.001G084100 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 1.4e-14 83.2 42 88.1
arahy.Tifrunner.gnm1.ann1.3J1SD9 Arachis hypogaea HOM05D007699 ORTHO05D009796 2.4e-14 82.4 51 78.4
FAN08G2016 Fragaria x ananassa HOM05D007699 ORTHO05D009796 2.4e-14 82.4 40 95.0
FAN11G3494 Fragaria x ananassa HOM05D007699 ORTHO05D009796 2.4e-14 82.4 40 95.0
Mapoly0020s0143 Marchantia polymorpha HOM05D007699 ORTHO05D009796 2.4e-14 82.4 41 92.7
C03p91420 Brassica napus HOM05D007699 ORTHO05D009796 3.2e-14 82.0 48 83.3
FAN13G3199 Fragaria x ananassa HOM05D007699 ORTHO05D009796 4.2e-14 81.6 39 94.9
Mapoly0086s0020 Marchantia polymorpha HOM05D007699 ORTHO05D009796 4.2e-14 81.6 39 94.9
QL03p053410 Quercus lobata HOM05D007699 ORTHO05D009796 4.2e-14 81.6 43 90.7
Nitab4.5_0005352g0040 Nicotiana tabacum HOM05D007699 ORTHO05D009796 5.4e-14 81.3 46 87.0
Carub.0003s1340 Capsella rubella HOM05D007699 ORTHO05D009796 9.3e-14 80.5 36 97.2
FAN08G0324 Fragaria x ananassa HOM05D007699 ORTHO05D009796 1.6e-13 79.7 38 94.7
Manes.11G145650 Manihot esculenta HOM05D007699 ORTHO05D009796 1.6e-13 79.7 48 77.1
CARHR088640 Cardamine hirsuta HOM05D007699 ORTHO05D009796 2.1e-13 79.3 35 100.0
Migut.J00839 Erythranthe guttata HOM05D007699 ORTHO05D009796 2.1e-13 79.3 35 100.0
Gohir.D06G068332 Gossypium hirsutum HOM05D007699 ORTHO05D009796 2.1e-13 79.3 44 81.8
Phvul.001G066900 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 2.1e-13 79.3 35 100.0
Pp3c15_10810 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.1e-13 79.3 45 84.4
Pp3c15_10813 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.1e-13 79.3 45 84.4
Pp3c15_10820 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.1e-13 79.3 45 84.4
Sopen12g028800 Solanum pennellii HOM05D007699 ORTHO05D009796 2.1e-13 79.3 35 100.0
Solyc12g056290.2 Solanum lycopersicum HOM05D007699 ORTHO05D009796 3.5e-13 78.6 37 94.6
EL10Ac6g13349 Beta vulgaris HOM05D007699 ORTHO05D009796 2.3e-12 75.9 51 72.5
EL10Ac6g13624 Beta vulgaris HOM05D007699 ORTHO05D009796 2.3e-12 75.9 39 87.2
GSVIVG01037330001 Vitis vinifera HOM05D007699 ORTHO05D009796 3.9e-12 75.1 36 94.4
Phvul.001G090500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 5.1e-12 74.7 45 82.2
EL10Ac6g13683 Beta vulgaris HOM05D007699 ORTHO05D009796 6.7e-12 74.3 36 91.7
Pp3c10_15080 Physcomitrium patens HOM05D007699 ORTHO05D009796 6.7e-12 74.3 66 59.1
Pp3c10_15084 Physcomitrium patens HOM05D007699 ORTHO05D009796 6.7e-12 74.3 66 59.1
Pp3s1006_30 Physcomitrium patens HOM05D007699 ORTHO05D009796 6.7e-12 74.3 66 59.1
Pp3s638_22 Physcomitrium patens HOM05D007699 ORTHO05D009796 6.7e-12 74.3 66 59.1
Pp3s677_10 Physcomitrium patens HOM05D007699 ORTHO05D009796 6.7e-12 74.3 66 59.1
Pp3s677_11 Physcomitrium patens HOM05D007699 ORTHO05D009796 6.7e-12 74.3 66 59.1
Ah.10g036850 Amaranthus hybridus HOM05D007699 ORTHO05D009796 8.7e-12 73.9 36 91.7
Pp3c1_6540 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.7e-12 73.9 47 76.6
Ciclev10018283m.g Citrus clementina HOM05D007699 ORTHO05D009796 1.1e-11 73.6 57 70.2
TPR.G32688 Trifolium pratense HOM05D007699 ORTHO05D009796 1.1e-11 73.6 81 48.1
EL10Ac6g13685 Beta vulgaris HOM05D007699 ORTHO05D009796 1.5e-11 73.2 35 94.3
Gorai.010G079800 Gossypium raimondii HOM05D007699 ORTHO05D009796 1.5e-11 73.2 68 55.9
Pp3c21_2000 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.5e-11 73.2 41 82.9
Pp3c21_2022 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.5e-11 73.2 41 82.9
Thecc.10G037500 Theobroma cacao HOM05D007699 ORTHO05D009796 2.5e-11 72.4 40 82.5
Pp3s677_20 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.3e-11 72.0 54 68.5
EL10Ac6g13623 Beta vulgaris HOM05D007699 ORTHO05D009796 4.3e-11 71.6 55 65.5
Nn7g36904 Nelumbo nucifera HOM05D007699 ORTHO05D009796 4.3e-11 71.6 36 91.7
Gorai.011G262200 Gossypium raimondii HOM05D007699 ORTHO05D009796 5.6e-11 71.2 39 82.1
Medtr8g461450 Medicago truncatula HOM05D007699 ORTHO05D009796 5.6e-11 71.2 32 100.0
EL10Ac6g13684 Beta vulgaris HOM05D007699 ORTHO05D009796 7.4e-11 70.9 34 94.1
Potri.005G055534 Populus trichocarpa HOM05D007699 ORTHO05D009796 9.6e-11 70.5 32 96.9
Pp3c24_6960 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.3e-10 70.1 41 75.6
Pp3c24_6961 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.3e-10 70.1 41 75.6
Potri.005G055667 Populus trichocarpa HOM05D007699 ORTHO05D009796 1.3e-10 70.1 32 96.9
CSS0021910 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 1.6e-10 69.7 38 84.2
Medtr3g108610 Medicago truncatula HOM05D007699 ORTHO05D009796 1.6e-10 69.7 35 91.4
PGSC0003DMG400029597 Solanum tuberosum HOM05D000312 ORTHO05D000221 1.6e-10 69.7 43 74.4
Pp3c24_16090 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.1e-10 69.3 76 52.6
Pp3c24_16091 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.1e-10 69.3 76 52.6
FAN18G1871 Fragaria x ananassa HOM05D007699 ORTHO05D009796 2.8e-10 68.9 34 91.2
Glyma.19G099100 Glycine max HOM05D007699 ORTHO05D009796 2.8e-10 68.9 34 91.2
SHI29091 Sapria himalayana HOM05D007699 ORTHO05D009796 2.8e-10 68.9 33 93.9
Phvul.009G076400 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 3.6e-10 68.6 34 88.2
Carub.0006s3371 Capsella rubella HOM05D007699 ORTHO05D009796 4.8e-10 68.2 31 96.8
Gohir.A11G277350 Gossypium hirsutum HOM05D007699 ORTHO05D009796 4.8e-10 68.2 35 88.6
CSS0023756 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 6.2e-10 67.8 40 80.0
Pp3c1_26810 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.1e-10 67.4 31 96.8
Pp3c1_26830 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.1e-10 67.4 31 96.8
FAN11G3758 Fragaria x ananassa HOM05D007699 ORTHO05D009796 1.1e-09 67.0 30 100.0
Gorai.011G262800 Gossypium raimondii HOM05D007699 ORTHO05D009796 1.1e-09 67.0 30 100.0
arahy.Tifrunner.gnm1.ann1.C3EWW9 Arachis hypogaea HOM05D007699 ORTHO05D009796 1.4e-09 66.6 31 96.8
EL10Ac6g13625 Beta vulgaris HOM05D007699 ORTHO05D009796 1.4e-09 66.6 50 68.0
EL10Ac6g13621 Beta vulgaris HOM05D007699 ORTHO05D009796 3.4e-08 62.0 35 80.0
Medtr2g101670 Medicago truncatula HOM05D007699 ORTHO05D009796 5.8e-08 61.2 44 68.2
SHI28974 Sapria himalayana HOM05D007699 ORTHO05D009796 7.6e-08 60.8 41 70.7
Medtr6g070990 Medicago truncatula HOM05D007699 ORTHO05D009796 1.3e-07 60.1 43 69.8
Pp3c27_1930 Physcomitrium patens HOM05D007699 ORTHO05D009796 5.5e-06 54.7 32 75.0
AT2G15530 Arabidopsis thaliana HOM05D000187 ORTHO05D000230 9.3e-06 53.9 45 62.2


User provided reference genes

Program Settings