Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 1.1e-44 183.0 92 100.0
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 5.0e-34 147.5 93 79.6
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 1.2e-24 116.3 95 68.4
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 3.6e-24 114.8 94 66.0
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 1.7e-21 105.9 94 60.6
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 6.3e-21 104.0 94 62.8
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 3.5e-19 98.2 82 63.4
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 3.5e-19 98.2 92 58.7
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 3.8e-18 94.7 82 62.2
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 2.1e-16 89.0 93 54.8
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.0e-15 85.1 92 48.9
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.0e-15 84.7 95 44.2
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.8e-15 84.0 92 47.8
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 5.7e-14 80.9 93 46.2
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 5.7e-14 80.9 85 52.9
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 9.8e-14 80.1 96 44.8
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 9.8e-14 80.1 94 46.8
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.3e-13 79.7 93 47.3
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 1.7e-13 79.3 87 47.1
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 3.7e-13 78.2 86 47.7
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.4e-12 76.3 87 46.0
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 1.8e-12 75.9 93 45.2
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 1.8e-12 75.9 93 45.2
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 2.4e-12 75.5 93 46.2
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.1e-12 74.7 93 47.3
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 9.2e-12 73.6 89 46.1
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 1.2e-11 73.2 96 42.7
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-11 73.2 96 42.7
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.2e-11 73.2 93 47.3
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.2e-11 73.2 93 47.3
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 1.6e-11 72.8 96 47.9
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.0e-11 72.4 88 48.9
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.0e-11 72.4 88 48.9
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.5e-11 71.6 97 42.3
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.5e-11 71.2 81 48.1
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 5.9e-11 70.9 91 41.8
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.9e-11 70.9 96 41.7
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 5.9e-11 70.9 84 44.0
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.0e-10 70.1 95 45.3
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 1.3e-10 69.7 78 47.4
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-10 69.7 97 45.4
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 1.7e-10 69.3 90 45.6
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.3e-10 68.9 86 47.7
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.3e-10 68.9 97 43.3
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 2.3e-10 68.9 88 44.3
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.9e-10 68.6 91 48.4
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 3.8e-10 68.2 80 47.5
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 5.0e-10 67.8 94 43.6
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 5.0e-10 67.8 87 43.7
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 8.6e-10 67.0 47 59.6
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 8.6e-10 67.0 83 39.8
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 8.6e-10 67.0 85 48.2
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.1e-09 66.6 88 46.6
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 1.1e-09 66.6 85 44.7
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.1e-09 66.6 95 44.2
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 1.5e-09 66.2 94 37.2
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.5e-09 66.2 50 60.0
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.5e-09 66.2 97 42.3
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.5e-09 66.2 47 57.4
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 1.9e-09 65.9 85 44.7
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 1.9e-09 65.9 91 45.1
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.9e-09 65.9 85 44.7
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 1.9e-09 65.9 90 46.7
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.3e-09 65.1 85 43.5
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.3e-09 65.1 82 42.7
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 3.3e-09 65.1 84 41.7
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 3.3e-09 65.1 83 42.2
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 3.3e-09 65.1 92 40.2
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.3e-09 65.1 47 55.3
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.3e-09 64.7 80 46.2
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.3e-09 64.7 80 46.2
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 4.3e-09 64.7 94 43.6
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 5.6e-09 64.3 80 43.8
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.6e-09 64.3 80 43.8
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 5.6e-09 64.3 89 40.4
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 5.6e-09 64.3 79 46.8
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 5.6e-09 64.3 91 39.6
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 7.3e-09 63.9 92 41.3
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 9.5e-09 63.5 82 42.7
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.2e-08 63.2 94 42.6
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 1.2e-08 63.2 94 42.6
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 1.2e-08 63.2 84 42.9
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.2e-08 63.2 75 42.7
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.2e-08 63.2 83 44.6
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.2e-08 63.2 76 43.4
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.2e-08 63.2 76 42.1
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 1.6e-08 62.8 82 42.7
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 1.6e-08 62.8 103 40.8
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.1e-08 62.4 79 45.6
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 2.8e-08 62.0 77 42.9
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 2.8e-08 62.0 88 37.5
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 2.8e-08 62.0 91 39.6
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 2.8e-08 62.0 102 39.2
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 2.8e-08 62.0 85 44.7
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 3.6e-08 61.6 92 43.5
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 3.6e-08 61.6 53 52.8
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 4.7e-08 61.2 83 39.8
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 6.1e-08 60.8 77 45.5
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 6.1e-08 60.8 92 43.5
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 6.1e-08 60.8 85 41.2
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.1e-08 60.8 83 39.8
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 6.1e-08 60.8 76 44.7
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 8.0e-08 60.5 80 43.8
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 8.0e-08 60.5 89 41.6
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 8.0e-08 60.5 91 46.2
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 8.0e-08 60.5 83 45.8
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 8.0e-08 60.5 92 39.1
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 8.0e-08 60.5 87 43.7
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 1.4e-07 59.7 69 44.9
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.4e-07 59.7 96 39.6
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 1.4e-07 59.7 97 43.3
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.4e-07 59.7 98 40.8
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 1.4e-07 59.7 97 39.2
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 1.4e-07 59.7 80 40.0
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 1.8e-07 59.3 95 36.8
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 1.8e-07 59.3 83 43.4
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 1.8e-07 59.3 83 43.4
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 1.8e-07 59.3 91 40.7
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.8e-07 59.3 88 40.9
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 2.3e-07 58.9 96 37.5
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 2.3e-07 58.9 87 40.2
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 2.3e-07 58.9 76 40.8
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 3.0e-07 58.5 86 40.7
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 3.0e-07 58.5 97 43.3
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 3.0e-07 58.5 32 75.0
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.0e-07 58.2 83 39.8
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 4.0e-07 58.2 83 43.4
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 6.8e-07 57.4 40 62.5
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 6.8e-07 57.4 40 62.5
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 8.9e-07 57.0 93 37.6
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 8.9e-07 57.0 80 45.0
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 8.9e-07 57.0 75 38.7
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 1.2e-06 56.6 86 43.0
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 1.2e-06 56.6 41 53.7
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.0e-06 55.8 98 39.8
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 2.0e-06 55.8 97 41.2
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 2.0e-06 55.8 87 39.1
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 2.6e-06 55.5 47 53.2
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.6e-06 55.5 55 50.9
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 2.6e-06 55.5 46 54.3
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 3.4e-06 55.1 90 37.8
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 3.4e-06 55.1 34 64.7
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 3.4e-06 55.1 94 40.4
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 3.4e-06 55.1 52 51.9
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 3.4e-06 55.1 82 41.5
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.4e-06 54.7 79 38.0
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 4.4e-06 54.7 82 41.5
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 5.7e-06 54.3 52 51.9
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 5.7e-06 54.3 88 42.0
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.5e-06 53.9 81 38.3
Migut.N02515 Erythranthe guttata HOM05D003745 ORTHO05D004215 9.8e-06 53.5 86 41.9


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