Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g012660 Medicago truncatula HOM05D000510 ORTHO05D031573 3.8e-24 114.0 57 100.0
Medtr2g012533 Medicago truncatula HOM05D000510 ORTHO05D031573 1.1e-12 75.9 42 88.1
Medtr4g044663 Medicago truncatula HOM05D000510 ORTHO05D002064 1.7e-08 62.0 37 83.8
Psat0s2779g0040 Pisum sativum HOM05D000510 ORTHO05D002064 1.7e-08 62.0 37 83.8
Ca_26774_v3 Cicer arietinum L. HOM05D000510 ORTHO05D002064 3.8e-08 60.8 37 83.8
CiPaw.14G004100 Carya illinoinensis HOM05D000510 ORTHO05D002064 5.0e-08 60.5 37 81.1
TPR.G8354 Trifolium pratense HOM05D000510 ORTHO05D002064 5.0e-08 60.5 37 81.1
Cfa010831 Carpinus fangiana HOM05D000510 ORTHO05D002064 6.5e-08 60.1 39 79.5
Haze_03124 Corylus avellana HOM05D000510 ORTHO05D002064 6.5e-08 60.1 39 79.5
Haze_03127 Corylus avellana HOM05D000510 ORTHO05D002064 6.5e-08 60.1 39 79.5
RcHm_v2.0_Chr1g0318491 Rosa chinensis HOM05D000510 ORTHO05D002064 6.5e-08 60.1 36 83.3
Migut.N01807 Erythranthe guttata HOM05D000510 ORTHO05D002064 1.1e-07 59.3 43 74.4
FvH4_7g01890 Fragaria vesca HOM05D000510 ORTHO05D002064 1.4e-07 58.9 36 83.3
FAN01G1432 Fragaria x ananassa HOM05D000510 ORTHO05D002064 1.4e-07 58.9 36 83.3
FAN03G0016 Fragaria x ananassa HOM05D000510 ORTHO05D002064 1.4e-07 58.9 36 83.3
FAN06G1423 Fragaria x ananassa HOM05D000510 ORTHO05D002064 1.4e-07 58.9 36 83.3
MD07G1025000 Malus domestica HOM05D000510 ORTHO05D002064 1.4e-07 58.9 36 80.6
Prupe.2G024700 Prunus persica HOM05D000510 ORTHO05D002064 1.4e-07 58.9 36 83.3
QL04p010514 Quercus lobata HOM05D000510 ORTHO05D002064 1.9e-07 58.5 37 78.4
MD02G1299900 Malus domestica HOM05D000510 ORTHO05D002064 2.5e-07 58.2 36 80.6
CANSAT80G2046 Cannabis sativa HOM05D000510 ORTHO05D002064 4.2e-07 57.4 37 78.4
Oeu027363.1 Olea europaea HOM05D000510 ORTHO05D002064 4.2e-07 57.4 37 78.4
ClCG10G012120 Citrullus lanatus HOM05D000510 ORTHO05D002064 5.5e-07 57.0 45 66.7
MELO3C024004.2 Cucumis melo HOM05D000510 ORTHO05D002064 5.5e-07 57.0 45 66.7
CsaV3_3G031880 Cucumis sativus L. HOM05D000510 ORTHO05D002064 5.5e-07 57.0 45 66.7
Oeu049470.1 Olea europaea HOM05D000510 ORTHO05D002064 5.5e-07 57.0 37 75.7
arahy.Tifrunner.gnm1.ann1.QJD1U8 Arachis hypogaea HOM05D000510 ORTHO05D002064 7.2e-07 56.6 37 75.7
arahy.Tifrunner.gnm1.ann1.ZJ3UGF Arachis hypogaea HOM05D000510 ORTHO05D002064 7.2e-07 56.6 37 75.7
Glyma.09G226300 Glycine max HOM05D000510 ORTHO05D002064 7.2e-07 56.6 36 80.6
Glyma.12G010500 Glycine max HOM05D000510 ORTHO05D002064 7.2e-07 56.6 36 80.6
Lj3g0009932 Lotus japonicus HOM05D000510 ORTHO05D002064 7.2e-07 56.6 36 80.6
Sed0024092 Sechium edule HOM05D000510 ORTHO05D002064 7.2e-07 56.6 45 64.4
VMungo1127G0278 Vigna mungo HOM05D000510 ORTHO05D002064 7.2e-07 56.6 36 80.6
Aqoxy1G00317 Aquilegia oxysepala HOM05D000510 ORTHO05D002064 9.4e-07 56.2 37 75.7
Nitab4.5_0006695g0010 Nicotiana tabacum HOM05D000510 ORTHO05D002064 9.4e-07 56.2 37 73.0
CAN.G410.5 Capsicum annuum HOM05D000510 ORTHO05D002064 1.2e-06 55.8 37 73.0
Lalb_Chr01g0000531 Lupinus albus HOM05D000510 ORTHO05D002064 1.2e-06 55.8 37 75.7
Nn2g15164 Nelumbo nucifera HOM05D000510 ORTHO05D002064 1.2e-06 55.8 37 78.4
Nn7g36351 Nelumbo nucifera HOM05D000510 ORTHO05D002064 1.2e-06 55.8 37 78.4
Nitab4.5_0011011g0020 Nicotiana tabacum HOM05D000510 ORTHO05D002064 1.2e-06 55.8 37 73.0
Peaxi162Scf01108g00121 Petunia axillaris HOM05D000510 ORTHO05D002064 1.2e-06 55.8 36 75.0
Sabra09G0040400 Salix brachista HOM05D000510 ORTHO05D002064 1.2e-06 55.8 37 73.0
SalBow6G3535 Salvia bowleyana HOM05D000510 ORTHO05D002064 1.2e-06 55.8 37 75.7
SalBow6G5520 Salvia bowleyana HOM05D000510 ORTHO05D002064 1.2e-06 55.8 37 75.7
Dinv43399 Davidia involucrata HOM05D000510 ORTHO05D002064 1.6e-06 55.5 37 73.0
Lsat_1_v5_gn_1_98861 Lactuca sativa HOM05D000510 ORTHO05D002064 1.6e-06 55.5 37 75.7
Manes.10G135000 Manihot esculenta HOM05D000510 ORTHO05D002064 1.6e-06 55.5 37 73.0
Sed0002784 Sechium edule HOM05D000510 ORTHO05D002064 1.6e-06 55.5 36 75.0
CDE08G0218 Ceratophyllum demersum HOM05D000510 ORTHO05D002064 2.1e-06 55.1 37 75.7
DCAR_022367 Daucus carota HOM05D000510 ORTHO05D002064 2.1e-06 55.1 39 69.2
Phvul.011G013100 Phaseolus vulgaris HOM05D000510 ORTHO05D002064 2.1e-06 55.1 36 77.8
ATR0782G181 Amborella trichopoda HOM05D000510 ORTHO05D002064 2.7e-06 54.7 37 67.6
MSTRG.17004 Avicennia marina HOM05D000510 ORTHO05D002064 2.7e-06 54.7 37 75.7
Nn5g29946 Nelumbo nucifera HOM05D000510 ORTHO05D002064 2.7e-06 54.7 35 74.3
Solyc01g088050.3 Solanum lycopersicum HOM05D000510 ORTHO05D002064 2.7e-06 54.7 37 70.3
Sopen01g034930 Solanum pennellii HOM05D000510 ORTHO05D002064 2.7e-06 54.7 37 70.3
VMungo0720G0100 Vigna mungo HOM05D000510 ORTHO05D002064 2.7e-06 54.7 34 79.4
arahy.Tifrunner.gnm1.ann1.KVZ3W0 Arachis hypogaea HOM05D000510 ORTHO05D002064 3.6e-06 54.3 37 70.3
Lj9C642T9 Lonicera japonica HOM05D000510 ORTHO05D002064 3.6e-06 54.3 37 75.7
Manes.07G012000 Manihot esculenta HOM05D000510 ORTHO05D002064 3.6e-06 54.3 37 73.0
Nn3g19081 Nelumbo nucifera HOM05D000510 ORTHO05D028508 3.6e-06 54.3 47 55.3
Potri.001G260800 Populus trichocarpa HOM05D000510 ORTHO05D002064 3.6e-06 54.3 37 70.3
Sabra16G0159400 Salix brachista HOM05D000510 ORTHO05D002064 3.6e-06 54.3 37 70.3
TAR633G0378 Trochodendron aralioides HOM05D000510 ORTHO05D002064 3.6e-06 54.3 37 75.7
TAR633G0685 Trochodendron aralioides HOM05D000510 ORTHO05D002064 3.6e-06 54.3 37 75.7
TAR636G1742 Trochodendron aralioides HOM05D000510 ORTHO05D002064 3.6e-06 54.3 39 71.8
CSS0047164 Camellia sinensis var. sinensis HOM05D000510 ORTHO05D002064 4.7e-06 53.9 39 71.8
Migut.B01257 Erythranthe guttata HOM05D000510 ORTHO05D002064 4.7e-06 53.9 37 70.3
PGSC0003DMG400006830 Solanum tuberosum HOM05D000510 ORTHO05D002064 4.7e-06 53.9 37 67.6
Actinidia20654 Actinidia chinensis HOM05D000510 ORTHO05D002064 6.1e-06 53.5 36 72.2
Cc04_g14690 Coffea canephora HOM05D000510 ORTHO05D002064 6.1e-06 53.5 37 73.0
Hma1.2p1_0579F.1_g182550 Hydrangea macrophylla HOM05D000510 ORTHO05D002064 6.1e-06 53.5 36 77.8
Nn1g05499 Nelumbo nucifera HOM05D000510 ORTHO05D002064 6.1e-06 53.5 35 74.3
TWI09G1174 Tripterygium wilfordii HOM05D000510 ORTHO05D002064 6.1e-06 53.5 37 73.0
TWI53G0124 Tripterygium wilfordii HOM05D000510 ORTHO05D002064 6.1e-06 53.5 37 73.0
vmacro21142 Vaccinium macrocarpon HOM05D000510 ORTHO05D002064 6.1e-06 53.5 37 70.3
Gorai.009G279700 Gossypium raimondii HOM05D000510 ORTHO05D002064 7.9e-06 53.1 48 58.3
PSO339G2326 Papaver somniferum HOM05D000510 ORTHO05D002064 7.9e-06 53.1 36 72.2
PSO384G0818 Papaver somniferum HOM05D000510 ORTHO05D002064 7.9e-06 53.1 36 72.2
PGR031G0439 Punica granatum HOM05D000510 ORTHO05D002064 7.9e-06 53.1 37 73.0
TAR625G0872 Trochodendron aralioides HOM05D000510 ORTHO05D002064 7.9e-06 53.1 35 71.4


User provided reference genes

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