Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 2.3e-61 238.8 127 100.0
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 1.1e-60 236.5 127 98.4
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 5.2e-58 227.6 127 95.3
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 4.9e-56 221.1 127 91.3
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 6.4e-56 220.7 127 91.3
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 5.4e-55 217.6 127 89.0
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 1.2e-54 216.5 127 89.0
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.6e-54 216.1 127 89.8
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 2.1e-54 215.7 127 89.0
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 2.7e-54 215.3 127 89.0
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 3.5e-54 214.9 127 87.4
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 3.5e-54 214.9 127 89.0
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 3.5e-54 214.9 127 86.6
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 6.0e-54 214.2 124 91.1
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 6.0e-54 214.2 127 88.2
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 1.3e-53 213.0 127 87.4
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 1.3e-53 213.0 127 88.2
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.7e-53 212.6 127 87.4
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.7e-53 212.6 127 87.4
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 2.3e-53 212.2 127 86.6
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 3.0e-53 211.8 127 86.6
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 3.9e-53 211.5 125 87.2
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 5.1e-53 211.1 125 88.0
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 8.7e-53 210.3 127 85.8
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 8.7e-53 210.3 127 85.0
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 8.7e-53 210.3 128 87.5
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 1.1e-52 209.9 127 86.6
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 1.9e-52 209.1 127 85.8
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.9e-52 209.1 127 85.0
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 2.5e-52 208.8 127 85.0
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.5e-52 208.8 127 85.0
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 2.5e-52 208.8 126 86.5
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 2.5e-52 208.8 127 86.6
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 3.3e-52 208.4 127 85.0
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 4.3e-52 208.0 128 85.9
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 5.6e-52 207.6 127 85.8
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 5.6e-52 207.6 127 85.0
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 7.3e-52 207.2 127 85.8
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 9.6e-52 206.8 127 85.0
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 9.6e-52 206.8 127 83.5
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 9.6e-52 206.8 127 84.3
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 9.6e-52 206.8 127 84.3
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 1.2e-51 206.5 127 85.0
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 1.6e-51 206.1 128 85.9
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.6e-51 206.1 127 84.3
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 2.1e-51 205.7 129 85.3
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 2.8e-51 205.3 128 85.9
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 4.7e-51 204.5 129 84.5
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 6.2e-51 204.1 124 86.3
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 6.2e-51 204.1 128 85.2
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 1.1e-50 203.4 127 84.3
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 1.4e-50 203.0 123 85.4
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 1.4e-50 203.0 128 84.4
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 2.4e-50 202.2 126 83.3
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 2.4e-50 202.2 123 86.2
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 2.4e-50 202.2 126 82.5
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 4.0e-50 201.4 126 81.7
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 6.9e-50 200.7 129 82.2
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 6.9e-50 200.7 129 82.2
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 9.0e-50 200.3 122 86.1
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 9.0e-50 200.3 129 81.4
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 1.5e-49 199.5 129 82.9
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 2.0e-49 199.1 127 79.5
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 4.4e-49 198.0 129 81.4
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 5.8e-49 197.6 127 80.3
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 7.6e-49 197.2 126 81.7
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 1.3e-48 196.4 127 79.5
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 1.3e-48 196.4 127 75.6
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 1.7e-48 196.1 127 78.0
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 3.8e-48 194.9 129 79.8
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 4.9e-48 194.5 126 77.8
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 6.4e-48 194.1 127 76.4
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 8.4e-48 193.7 126 80.2
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 1.4e-47 193.0 127 78.0
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.4e-47 193.0 127 78.7
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 1.9e-47 192.6 127 77.2
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 1.9e-47 192.6 127 78.7
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 2.4e-47 192.2 124 78.2
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 3.2e-47 191.8 126 79.4
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 9.3e-47 190.3 122 82.0
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 1.2e-46 189.9 127 76.4
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 1.6e-46 189.5 126 77.0
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 2.7e-46 188.7 127 75.6
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 3.5e-46 188.3 124 76.6
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 3.9e-45 184.9 126 75.4
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 8.7e-45 183.7 130 76.2
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 8.7e-45 183.7 130 76.2
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 2.5e-44 182.2 127 72.4
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 7.3e-44 180.6 125 74.4
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 7.3e-44 180.6 127 72.4
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 1.6e-43 179.5 129 77.5
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 8.1e-43 177.2 131 70.2
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 8.1e-43 177.2 122 73.0
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 8.1e-43 177.2 131 70.2
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 1.1e-42 176.8 118 77.1
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 1.1e-42 176.8 122 73.0
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 1.4e-42 176.4 118 78.0
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 1.4e-42 176.4 131 71.8
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 1.8e-42 176.0 125 73.6
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 1.8e-42 176.0 130 72.3
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 2.4e-42 175.6 118 76.3
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 3.1e-42 175.3 131 69.5
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 4.0e-42 174.9 130 71.5
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 4.0e-42 174.9 131 71.0
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 4.0e-42 174.9 127 74.8
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 1.2e-41 173.3 127 69.3
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 3.4e-41 171.8 129 74.4
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 3.4e-41 171.8 129 74.4
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 2.9e-40 168.7 127 70.1
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 3.2e-39 165.2 127 68.5
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 4.2e-39 164.9 127 67.7
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 5.4e-39 164.5 127 66.9
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 3.5e-38 161.8 147 59.9
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 1.3e-37 159.8 127 65.4
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 6.7e-37 157.5 150 61.3
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 4.8e-35 151.4 127 63.8
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 4.5e-33 144.8 88 88.6
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 1.3e-32 143.3 127 59.1
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 3.8e-32 141.7 127 59.8
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 8.4e-32 140.6 86 81.4
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 6.0e-30 134.4 127 56.7
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 2.3e-29 132.5 87 81.6
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 5.1e-29 131.3 87 79.3
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 7.4e-28 127.5 87 75.9
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 5.3e-26 121.3 133 52.6
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 1.6e-22 109.8 120 46.7
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 1.0e-16 90.5 121 41.3
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 1.7e-16 89.7 121 43.0
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 5.0e-16 88.2 61 75.4
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 3.9e-13 78.6 46 87.0
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 5.7e-12 74.7 40 90.0
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 7.4e-12 74.3 40 87.5
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 1.4e-10 70.1 50 76.0
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.7e-08 63.2 31 93.5
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 6.5e-08 61.2 41 70.7


User provided reference genes

Program Settings