Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 1.1e-173 613.2 329 100.0
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 4.6e-106 388.7 291 79.0
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 1.1e-91 340.9 208 82.2
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.9e-91 340.1 302 67.9
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 3.2e-91 339.3 210 80.5
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 4.2e-91 339.0 284 70.4
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 1.8e-89 333.6 279 66.3
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 2.3e-89 333.2 286 68.2
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 5.1e-89 332.0 286 65.0
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 6.7e-89 331.6 289 69.9
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 7.4e-88 328.2 268 66.4
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 2.8e-87 326.2 221 75.6
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 2.4e-86 323.2 220 73.6
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 4.0e-86 322.4 273 63.4
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 5.3e-86 322.0 218 74.8
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 1.5e-85 320.5 207 78.3
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 2.0e-85 320.1 202 78.2
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 2.0e-85 320.1 200 77.5
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 2.0e-85 320.1 292 61.0
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 2.6e-85 319.7 290 62.1
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 2.6e-85 319.7 219 74.0
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.4e-85 319.3 219 74.0
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 4.5e-85 318.9 279 63.1
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 4.5e-85 318.9 211 75.8
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 5.8e-85 318.5 272 64.0
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 1.0e-84 317.8 219 74.0
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 2.2e-84 316.6 210 74.8
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.2e-84 316.6 211 74.9
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.2e-84 316.6 211 74.9
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 2.2e-84 316.6 213 72.8
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.9e-84 316.2 211 75.4
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 2.9e-84 316.2 290 62.1
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 3.8e-84 315.8 282 62.1
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 3.8e-84 315.8 202 77.7
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 3.8e-84 315.8 280 62.5
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 8.4e-84 314.7 210 74.3
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 2.5e-83 313.2 216 71.3
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 3.2e-83 312.8 278 61.5
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 3.2e-83 312.8 220 70.5
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 4.2e-83 312.4 252 64.7
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 4.2e-83 312.4 213 74.2
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 4.2e-83 312.4 213 74.2
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 4.2e-83 312.4 220 70.5
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 5.5e-83 312.0 272 63.2
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 5.5e-83 312.0 207 72.9
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 1.6e-82 310.5 300 58.7
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.7e-82 309.7 203 76.4
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 2.7e-82 309.7 285 63.9
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 3.5e-82 309.3 208 73.6
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 3.5e-82 309.3 220 69.1
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 6.0e-82 308.5 284 59.5
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 6.0e-82 308.5 207 73.9
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 1.8e-81 307.0 220 70.0
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 1.8e-81 307.0 218 71.1
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 1.8e-81 307.0 279 64.2
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 2.3e-81 306.6 211 73.5
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 3.0e-81 306.2 280 60.4
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 6.7e-81 305.1 210 73.8
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 6.7e-81 305.1 219 71.2
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 8.7e-81 304.7 210 71.9
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 8.7e-81 304.7 219 71.7
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 1.5e-80 303.9 211 73.5
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 1.9e-80 303.5 274 63.5
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 2.5e-80 303.1 198 76.3
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 2.5e-80 303.1 259 63.7
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 2.5e-80 303.1 202 74.8
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 3.3e-80 302.8 213 71.8
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 3.3e-80 302.8 257 64.2
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 4.3e-80 302.4 210 71.4
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 4.3e-80 302.4 269 59.5
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 1.3e-79 300.8 274 63.5
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 1.3e-79 300.8 274 63.5
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 1.3e-79 300.8 207 71.0
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 2.2e-79 300.1 219 69.4
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 3.7e-79 299.3 209 72.7
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 4.8e-79 298.9 198 71.7
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 8.2e-79 298.1 282 58.5
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.8e-78 297.0 210 70.5
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 2.4e-78 296.6 203 71.4
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 2.4e-78 296.6 197 72.1
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 9.0e-78 294.7 197 72.1
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 4.5e-77 292.4 263 60.5
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 1.3e-76 290.8 208 71.2
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 1.7e-76 290.4 208 70.7
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 2.9e-76 289.7 198 71.7
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 6.5e-76 288.5 271 56.1
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 1.1e-75 287.7 290 56.6
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 2.5e-75 286.6 202 69.8
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 5.5e-75 285.4 209 68.4
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 7.2e-75 285.0 246 65.9
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 1.6e-74 283.9 292 59.2
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 2.1e-74 283.5 203 66.0
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 6.1e-74 282.0 201 68.2
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 4.3e-72 275.8 197 70.1
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 4.3e-72 275.8 197 70.1
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 7.4e-72 275.0 210 66.7
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 1.3e-71 274.2 270 55.9
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 2.2e-71 273.5 197 69.0
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 1.8e-70 270.4 200 68.0
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 3.1e-70 269.6 269 57.2
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 2.8e-63 246.5 165 73.9
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 1.8e-62 243.8 186 78.5
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.3e-60 237.7 197 56.9
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 5.2e-57 225.7 189 76.7
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 5.2e-57 225.7 203 52.2
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 6.7e-57 225.3 239 62.8
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 1.3e-55 221.1 206 51.0
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.2e-55 220.3 174 67.8
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 8.2e-55 218.4 200 54.0
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 3.5e-53 213.0 198 58.1
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 8.5e-52 208.4 210 52.9
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.5e-51 207.6 195 61.0
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 6.7e-49 198.7 169 61.5
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 2.8e-47 193.4 141 67.4
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 5.3e-46 189.1 187 49.2
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 1.8e-38 164.1 174 56.9
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 4.1e-38 162.9 184 52.2
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 3.6e-34 149.8 110 69.1
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.2e-32 144.8 101 69.3
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.7e-31 141.0 108 66.7
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.3e-28 131.3 113 61.1
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 3.8e-28 129.8 93 67.7
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 7.3e-27 125.6 77 75.3
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 8.3e-23 112.1 81 70.4
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 2.4e-22 110.5 80 68.8
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 7.0e-22 109.0 81 67.9
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 3.9e-20 103.2 56 91.1
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 2.8e-18 97.1 88 53.4
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 2.0e-16 90.9 157 32.5
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 4.4e-16 89.7 92 54.3
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 5.8e-16 89.4 67 67.2
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 8.3e-15 85.5 57 73.7
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 3.5e-13 80.1 44 86.4
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 9.5e-11 72.0 135 32.6
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 6.2e-10 69.3 149 30.2
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 1.1e-09 68.6 123 33.3
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 1.4e-09 68.2 60 55.0
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 6.8e-09 65.9 45 60.0
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 3.4e-08 63.5 34 85.3
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 5.8e-08 62.8 45 66.7
Psat5g092440 Pisum sativum HOM05D060402 ORTHO05D330647 2.2e-07 60.8 184 33.7
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.7e-07 60.1 131 30.5


User provided reference genes

Program Settings