Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 4.4e-166 587.8 281 100.0
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 2.8e-136 488.8 281 86.8
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 1.5e-73 280.4 186 81.2
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 5.7e-57 225.3 152 68.4
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 1.4e-55 220.7 176 60.2
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 1.4e-55 220.7 176 60.2
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 7.0e-55 218.4 147 67.3
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 9.2e-55 218.0 147 67.3
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 1.6e-54 217.2 162 59.9
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 4.6e-54 215.7 147 66.7
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 8.6e-53 211.5 179 59.2
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 1.1e-52 211.1 154 61.7
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 1.5e-52 210.7 175 59.4
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 1.9e-52 210.3 180 53.9
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 1.9e-52 210.3 162 61.1
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 3.3e-52 209.5 165 58.8
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 5.6e-52 208.8 182 58.8
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 5.6e-52 208.8 154 61.0
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 7.3e-52 208.4 181 55.2
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 9.5e-52 208.0 181 58.0
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 9.5e-52 208.0 250 45.6
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 1.2e-51 207.6 181 58.0
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 1.2e-51 207.6 181 58.0
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 1.2e-51 207.6 171 57.9
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 1.6e-51 207.2 204 53.4
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 1.6e-51 207.2 265 45.3
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.1e-51 206.8 173 59.5
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 2.1e-51 206.8 175 54.9
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 2.8e-51 206.5 267 44.2
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 3.6e-51 206.1 181 58.0
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 3.6e-51 206.1 173 59.5
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 3.6e-51 206.1 173 59.5
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 6.2e-51 205.3 158 62.0
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 8.0e-51 204.9 213 51.2
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 8.0e-51 204.9 161 61.5
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 1.1e-50 204.5 164 59.1
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 1.1e-50 204.5 178 56.2
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 1.1e-50 204.5 163 58.3
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 1.4e-50 204.1 172 57.0
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 1.8e-50 203.8 214 48.1
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 4.0e-50 202.6 151 62.9
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 4.0e-50 202.6 181 55.2
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 5.2e-50 202.2 160 56.9
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 6.8e-50 201.8 153 60.1
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 6.8e-50 201.8 176 56.8
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 6.8e-50 201.8 176 56.8
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 8.9e-50 201.4 167 59.9
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 1.5e-49 200.7 167 59.3
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 1.5e-49 200.7 254 45.3
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.6e-49 199.9 166 56.6
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 9.8e-49 198.0 171 56.7
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 9.8e-49 198.0 184 53.8
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 1.3e-48 197.6 222 46.4
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 1.3e-48 197.6 286 41.6
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 1.7e-48 197.2 146 61.0
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 2.2e-48 196.8 186 52.7
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 2.9e-48 196.4 204 49.5
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 4.9e-48 195.7 204 49.5
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 6.4e-48 195.3 182 52.7
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 6.4e-48 195.3 177 57.1
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 6.4e-48 195.3 160 58.1
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 6.4e-48 195.3 169 57.4
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 1.1e-47 194.5 252 43.7
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.1e-47 194.5 169 57.4
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.4e-47 194.1 151 59.6
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.4e-47 194.1 151 59.6
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.4e-47 194.1 160 60.0
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 3.2e-47 193.0 169 56.8
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 3.2e-47 193.0 150 58.7
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 4.1e-47 192.6 195 50.3
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 7.0e-47 191.8 175 53.1
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 9.2e-47 191.4 252 43.7
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 2.0e-46 190.3 185 52.4
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 2.7e-46 189.9 151 58.3
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.5e-46 189.5 249 43.8
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.5e-46 189.5 146 58.2
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 3.5e-46 189.5 175 53.1
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 3.5e-46 189.5 175 53.1
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 3.5e-46 189.5 175 53.1
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 3.5e-46 189.5 175 53.1
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 4.6e-46 189.1 160 58.8
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 6.0e-46 188.7 178 52.8
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 6.0e-46 188.7 170 56.5
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 1.0e-45 188.0 174 53.4
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 5.0e-45 185.7 172 53.5
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.9e-44 183.7 182 50.5
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.5e-44 183.3 182 50.5
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 3.3e-44 183.0 272 39.0
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 3.3e-44 183.0 145 55.9
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 7.3e-44 181.8 151 59.6
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 7.3e-44 181.8 147 55.8
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 2.8e-43 179.9 145 55.2
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.1e-42 177.9 150 52.0
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 3.1e-42 176.4 272 41.2
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 3.1e-42 176.4 272 41.2
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 5.2e-42 175.6 137 57.7
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.2e-41 174.5 167 50.3
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 3.4e-41 172.9 153 54.9
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 4.4e-41 172.6 211 46.9
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 5.8e-41 172.2 176 48.9
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 5.8e-41 172.2 192 46.9
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 7.5e-41 171.8 185 51.9
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 2.2e-40 170.2 135 57.0
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 4.9e-40 169.1 143 53.1
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 7.1e-39 165.2 98 74.5
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 2.7e-38 163.3 174 47.7
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.6e-38 162.5 182 47.3
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 6.6e-37 158.7 137 59.1
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 1.9e-36 157.1 174 46.6
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 5.6e-36 155.6 178 46.1
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 1.2e-35 154.5 137 49.6
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 1.1e-34 151.4 136 49.3
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.8e-34 150.6 177 45.8
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 2.4e-34 150.2 146 54.1
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 2.4e-34 150.2 101 63.4
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 2.4e-34 150.2 137 55.5
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.5e-33 147.5 271 36.5
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 2.2e-32 143.7 102 61.8
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 1.9e-31 140.6 145 49.7
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 7.1e-31 138.7 98 62.2
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 2.7e-30 136.7 96 62.5
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.5e-30 136.3 228 37.3
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 2.3e-29 133.7 152 46.7
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 2.5e-28 130.2 95 60.0
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 1.4e-26 124.4 136 47.8
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 2.6e-25 120.2 180 42.2
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 2.6e-25 120.2 180 42.2
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 6.4e-24 115.5 64 85.9
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.4e-23 113.6 94 52.1
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 1.6e-22 110.9 135 39.3
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 6.6e-21 105.5 146 39.7
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.9e-20 104.0 71 64.8
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 2.1e-19 100.5 71 63.4
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-18 98.2 80 53.8
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 2.4e-18 97.1 87 56.3
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 2.4e-18 97.1 58 67.2
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 2.4e-18 97.1 97 52.6
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 5.3e-18 95.9 126 43.7
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 4.5e-17 92.8 89 59.6
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 6.0e-14 82.4 82 51.2
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 8.1e-11 72.0 90 45.6
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 1.4e-10 71.2 97 43.3
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 2.4e-10 70.5 54 61.1
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 9.0e-10 68.6 68 58.8
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 2.0e-09 67.4 54 57.4
Medtr6g022590 Medicago truncatula HOM05D004639 ORTHO05D005201 9.9e-09 65.1 106 48.1
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 1.7e-08 64.3 54 55.6
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 4.9e-08 62.8 85 42.4
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 1.9e-07 60.8 76 44.7
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 2.4e-07 60.5 285 24.6
SHI28181 Sapria himalayana HOM05D000002 ORTHO05D000047 7.9e-06 55.5 34 67.6


User provided reference genes

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