Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0135s0023 Marchantia polymorpha HOM05D007272 ORTHO05D009305 6.5e-290 1000.0 489 100.0
Pp3c15_23310 Physcomitrium patens HOM05D007272 ORTHO05D009305 3.7e-120 436.0 489 50.1
ATR0706G038 Amborella trichopoda HOM05D007272 ORTHO05D009305 9.3e-87 325.1 488 41.2
GSVIVG01011351001 Vitis vinifera HOM05D007272 ORTHO05D009305 1.6e-86 324.3 484 40.9
Potri.017G079100 Populus trichocarpa HOM05D007272 ORTHO05D009305 6.0e-86 322.4 486 41.6
TAR629G0691 Trochodendron aralioides HOM05D007272 ORTHO05D009305 1.3e-85 321.2 484 42.4
Sabra17G0070200 Salix brachista HOM05D007272 ORTHO05D009305 6.6e-85 318.9 486 41.2
Cfa007518 Carpinus fangiana HOM05D007272 ORTHO05D009305 9.6e-84 315.1 484 40.5
Nn3g17142 Nelumbo nucifera HOM05D007272 ORTHO05D009305 9.6e-84 315.1 483 40.0
Haze_14576 Corylus avellana HOM05D007272 ORTHO05D009305 1.3e-83 314.7 484 41.1
QL02p080768 Quercus lobata HOM05D007272 ORTHO05D009305 1.1e-82 311.6 483 41.8
Manes.17G022200 Manihot esculenta HOM05D007272 ORTHO05D009305 3.1e-82 310.1 485 39.2
Prupe.3G271100 Prunus persica HOM05D007272 ORTHO05D009305 6.9e-82 308.9 485 40.2
Actinidia23567 Actinidia chinensis HOM05D007272 ORTHO05D009305 1.2e-81 308.1 485 40.2
Phvul.004G026700 Phaseolus vulgaris HOM05D007272 ORTHO05D009305 1.7e-80 304.3 491 40.3
vmacro05725 Vaccinium macrocarpon HOM05D007272 ORTHO05D009305 6.4e-80 302.4 482 40.5
Lsat_1_v5_gn_2_88701 Lactuca sativa HOM05D007272 ORTHO05D009305 1.1e-79 301.6 485 40.0
Lalb_Chr21g0318941 Lupinus albus HOM05D007272 ORTHO05D009305 1.4e-79 301.2 490 40.0
Ciclev10011541m.g Citrus clementina HOM05D007272 ORTHO05D009305 1.9e-79 300.8 482 40.2
TWI34G0655 Tripterygium wilfordii HOM05D007272 ORTHO05D009305 3.2e-79 300.1 487 41.5
SMO356G0594 Selaginella moellendorffii HOM05D007272 ORTHO05D009305 4.2e-79 299.7 413 41.6
PGR142G3376 Punica granatum HOM05D007272 ORTHO05D009305 3.5e-78 296.6 484 39.5
CiPaw.04G019400 Carya illinoinensis HOM05D007272 ORTHO05D009305 6.0e-78 295.8 483 38.1
MD17G1048000 Malus domestica HOM05D007272 ORTHO05D009305 1.0e-77 295.0 493 39.6
Glyma.13G064500 Glycine max HOM05D007272 ORTHO05D009305 3.9e-77 293.1 490 39.0
Ah.10g031300 Amaranthus hybridus HOM05D007272 ORTHO05D009305 1.9e-76 290.8 490 39.4
HPP92_000629 Vanilla planifolia HOM05D007272 ORTHO05D009305 3.3e-76 290.0 486 39.3
Duzib187G0958 Durio zibethinus HOM05D007272 ORTHO05D009305 5.6e-76 289.3 482 38.6
PSO591G0492 Papaver somniferum HOM05D007272 ORTHO05D009305 1.3e-75 288.1 481 39.1
Cc07_g03090 Coffea canephora HOM05D007272 ORTHO05D009305 1.6e-75 287.7 485 39.0
Thecc.04G075900 Theobroma cacao HOM05D007272 ORTHO05D009305 1.6e-75 287.7 483 39.1
Cpa.g.sc14.36 Carica papaya HOM05D007272 ORTHO05D009305 4.8e-75 286.2 443 40.9
Gorai.006G025400 Gossypium raimondii HOM05D007272 ORTHO05D009305 6.2e-75 285.8 482 38.2
Gohir.A09G022200 Gossypium hirsutum HOM05D007272 ORTHO05D009305 1.1e-74 285.0 482 38.4
Lj2g0009951 Lotus japonicus HOM05D007272 ORTHO05D009305 1.1e-74 285.0 463 40.4
DCAR_021668 Daucus carota HOM05D007272 ORTHO05D009305 1.8e-74 284.3 481 36.8
Hma1.2p1_0449F.1_g155160 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 5.3e-74 282.7 483 39.5
AUR62031636 Chenopodium quinoa HOM05D007272 ORTHO05D009305 2.6e-73 280.4 487 38.2
HanXRQChr14g0449311 Helianthus annuus HOM05D007272 ORTHO05D009305 2.6e-73 280.4 467 40.7
MSTRG.3220 Avicennia marina HOM05D007272 ORTHO05D009305 5.8e-73 279.3 488 37.9
SalBow1G7111 Salvia bowleyana HOM05D007272 ORTHO05D009305 1.3e-72 278.1 490 38.0
Lj2g0023599 Lotus japonicus HOM05D007272 ORTHO05D009305 2.2e-72 277.3 495 37.2
Hund13235 Selenicereus undatus HOM05D007272 ORTHO05D009305 3.8e-72 276.6 465 38.7
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 4.9e-72 276.2 488 39.1
FvH4_6g49170 Fragaria vesca HOM05D007272 ORTHO05D009305 6.5e-72 275.8 488 39.1
RcHm_v2.0_Chr2g0169041 Rosa chinensis HOM05D007272 ORTHO05D009305 1.4e-71 274.6 489 38.2
FAN14G5197 Fragaria x ananassa HOM05D007272 ORTHO05D009305 1.9e-71 274.2 488 38.9
Zm00001eb121640 Zea mays HOM05D007272 ORTHO05D009305 2.5e-71 273.9 482 37.8
arahy.Tifrunner.gnm1.ann1.UFNR33 Arachis hypogaea HOM05D007272 ORTHO05D009305 4.2e-71 273.1 487 37.4
CANSAT64G0717 Cannabis sativa HOM05D007272 ORTHO05D009305 4.2e-71 273.1 471 35.9
Lj7C400T1 Lonicera japonica HOM05D007272 ORTHO05D009305 5.5e-71 272.7 485 39.0
FAN05G2713 Fragaria x ananassa HOM05D007272 ORTHO05D009305 7.1e-71 272.3 488 39.1
Migut.H00895 Erythranthe guttata HOM05D007272 ORTHO05D009305 9.3e-71 271.9 485 38.6
Ca_04270_v3 Cicer arietinum L. HOM05D007272 ORTHO05D009305 6.0e-70 269.2 486 37.4
SGA_v2.0_scaffold135G34775 Striga asiatica HOM05D007118 ORTHO05D008957 1.0e-69 268.5 485 37.5
TPR.G4317 Trifolium pratense HOM05D007272 ORTHO05D009305 1.0e-69 268.5 490 37.6
Gohir.D09G021400 Gossypium hirsutum HOM05D007272 ORTHO05D009305 1.3e-69 268.1 454 38.5
PSO832G2300 Papaver somniferum HOM05D007272 ORTHO05D009305 3.9e-69 266.5 476 38.9
Psat1g075440 Pisum sativum HOM05D007272 ORTHO05D009305 6.7e-69 265.8 490 36.5
ClCG10G014870 Citrullus lanatus HOM05D007272 ORTHO05D009305 1.1e-68 265.0 479 36.7
Sc10g0003770 Simmondsia chinensis HOM05D007272 ORTHO05D009305 1.9e-68 264.2 472 37.5
THA.LOC104822369 Tarenaya hassleriana HOM05D007272 ORTHO05D009305 3.3e-68 263.5 486 38.5
RhsimUnG0199700 Rhododendron simsii HOM05D007272 ORTHO05D009305 5.7e-68 262.7 558 34.1
Os01g0185400 Oryza sativa ssp. japonica HOM05D007272 ORTHO05D009305 2.4e-66 257.3 484 34.9
QL02p080779 Quercus lobata HOM05D007272 ORTHO05D009305 9.0e-66 255.4 504 35.7
ECA238G2465 Erigeron canadensis HOM05D007272 ORTHO05D009305 1.5e-65 254.6 487 37.4
RhsimUnG0056400 Rhododendron simsii HOM05D007272 ORTHO05D009305 1.5e-65 254.6 584 33.6
Nitab4.5_0009739g0030 Nicotiana tabacum HOM05D007272 ORTHO05D009305 1.4e-63 248.1 493 36.1
EL10Ac2g02942 Beta vulgaris HOM05D007272 ORTHO05D009305 2.5e-63 247.3 484 36.0
VMungo0464G0783 Vigna mungo HOM05D007272 ORTHO05D009305 7.9e-62 242.3 414 40.1
FAN09G2990 Fragaria x ananassa HOM05D007272 ORTHO05D009305 6.7e-61 239.2 398 39.7
Oeu037173.1 Olea europaea HOM05D007272 ORTHO05D009305 7.4e-60 235.7 488 35.5
Solyc02g087730.3 Solanum lycopersicum HOM05D007272 ORTHO05D009305 2.8e-59 233.8 486 35.2
arahy.Tifrunner.gnm1.ann1.091QIK Arachis hypogaea HOM05D007272 ORTHO05D009305 3.7e-59 233.4 573 31.2
Sopen02g032460 Solanum pennellii HOM05D007272 ORTHO05D009305 3.1e-58 230.3 465 35.7
Aqoxy3G03290 Aquilegia oxysepala HOM05D007272 ORTHO05D009305 2.6e-57 227.3 400 39.0
Peaxi162Scf00129g00431 Petunia axillaris HOM05D007272 ORTHO05D009305 5.0e-56 223.0 503 35.2
Glyma.19G020400 Glycine max HOM05D007272 ORTHO05D009305 8.5e-56 222.2 350 42.6
Dinv33728 Davidia involucrata HOM05D007272 ORTHO05D009305 1.4e-55 221.5 336 42.0
Gorai.012G056400 Gossypium raimondii HOM05D007272 ORTHO05D009305 2.7e-54 217.2 463 34.6
Atru.chr8.1898 Acer truncatum HOM05D007272 ORTHO05D009305 7.9e-54 215.7 359 41.2
Gohir.D04G050866 Gossypium hirsutum HOM05D007272 ORTHO05D009305 7.9e-54 215.7 463 34.3
MD09G1047900 Malus domestica HOM05D007272 ORTHO05D009305 3.9e-53 213.4 516 33.9
Gohir.A05G363800 Gossypium hirsutum HOM05D007272 ORTHO05D009305 4.8e-51 206.5 472 34.7
COL.COLO4_25162 Corchorus olitorius HOM05D007118 ORTHO05D008957 1.2e-49 201.8 305 43.0
MD17G1048100 Malus domestica HOM05D007272 ORTHO05D009305 6.1e-46 189.5 329 40.4
AagrBONN_evm.TU.Sc2ySwM_344.2727 Anthoceros agrestis HOM05D007272 ORTHO05D009305 4.4e-44 183.3 178 50.6
Medtr6g011500 Medicago truncatula HOM05D007272 ORTHO05D009305 7.0e-42 176.0 387 36.4
Nitab4.5_0000564g0300 Nicotiana tabacum HOM05D007272 ORTHO05D009305 6.5e-32 142.9 551 27.4
PGSC0003DMG400001312 Solanum tuberosum HOM05D007272 ORTHO05D009305 4.2e-31 140.2 292 36.3
CDE04G0606 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 1.1e-23 115.5 194 36.1
CSS0034889 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 1.0e-21 109.0 234 34.2
CSS0013465 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 1.4e-21 108.6 218 36.2
ATR0693G009 Amborella trichopoda HOM05D007272 ORTHO05D009305 1.5e-12 78.6 142 38.7
SGA_v2.0_scaffold52G19082 Striga asiatica HOM05D007272 ORTHO05D009305 3.4e-12 77.4 147 32.7
SGA_v2.0_scaffold52G19148 Striga asiatica HOM05D007272 ORTHO05D009305 1.3e-11 75.5 106 37.7
CDE04G1434 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 2.4e-10 71.2 107 35.5
Duzib147G0842 Durio zibethinus HOM05D007272 ORTHO05D009305 1.3e-08 65.5 171 31.0
VMungo0464G0246 Vigna mungo HOM05D007272 ORTHO05D009305 3.0e-08 64.3 105 34.3
ECA233G5984 Erigeron canadensis HOM05D003769 ORTHO05D004521 6.6e-08 63.2 305 25.9
Hma1.2p1_2982F.1_g331250 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 2.5e-07 61.2 77 48.1
Zm00001eb204740 Zea mays HOM05D007272 ORTHO05D009305 2.5e-07 61.2 209 31.1
C08p24150 Brassica napus HOM05D002332 ORTHO05D002509 5.6e-07 60.1 306 25.2
BolC8t50036H Brassica oleracea HOM05D002332 ORTHO05D002509 9.5e-07 59.3 306 25.2
Zm00001eb160220 Zea mays HOM05D003769 ORTHO05D004521 1.2e-06 58.9 294 23.5
MELO3C030970.2 Cucumis melo HOM05D007272 ORTHO05D009305 2.1e-06 58.2 69 49.3
Os01g0575500 Oryza sativa ssp. japonica HOM05D003769 ORTHO05D004521 2.1e-06 58.2 304 23.0
Medtr7g047640 Medicago truncatula HOM05D000526 ORTHO05D000956 6.2e-06 56.6 176 26.7
Medtr7g451830 Medicago truncatula HOM05D000526 ORTHO05D000956 6.2e-06 56.6 176 26.7
BcaC07g39390 Brassica carinata HOM05D002332 ORTHO05D002509 8.0e-06 56.2 306 24.8
SGA_v2.0_scaffold52G19157 Striga asiatica HOM05D016586 ORTHO05D009305 8.0e-06 56.2 61 37.7


User provided reference genes

Program Settings