Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 1.3e-169 599.7 323 100.0
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 2.2e-105 386.3 285 73.0
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 2.5e-104 382.9 300 70.0
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 3.2e-104 382.5 266 75.6
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 6.1e-103 378.3 284 72.2
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 5.2e-102 375.2 267 75.3
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 5.2e-102 375.2 296 69.9
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 5.2e-102 375.2 288 70.8
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 1.2e-101 374.0 289 70.6
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 1.5e-101 373.6 258 76.4
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 2.0e-101 373.2 267 73.8
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 4.4e-101 372.1 296 68.9
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 5.7e-101 371.7 258 76.7
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 5.7e-101 371.7 258 76.0
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 5.7e-101 371.7 258 76.0
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 5.7e-101 371.7 265 74.3
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 7.5e-101 371.3 267 73.4
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 7.5e-101 371.3 249 77.5
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 9.7e-101 370.9 267 73.0
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 9.7e-101 370.9 267 73.0
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 9.7e-101 370.9 266 73.3
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 1.7e-100 370.2 261 75.1
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 2.2e-100 369.8 267 74.2
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 2.2e-100 369.8 266 74.1
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 3.7e-100 369.0 254 76.8
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 3.7e-100 369.0 258 76.0
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 3.7e-100 369.0 274 72.3
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 3.7e-100 369.0 274 72.3
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 4.8e-100 368.6 266 74.1
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 4.8e-100 368.6 258 75.2
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 4.8e-100 368.6 258 76.0
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 6.3e-100 368.2 267 72.7
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 6.3e-100 368.2 266 72.9
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 6.3e-100 368.2 258 75.2
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 6.3e-100 368.2 283 70.7
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 6.3e-100 368.2 253 76.3
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 8.2e-100 367.9 254 76.8
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 8.2e-100 367.9 267 73.4
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 8.2e-100 367.9 257 75.1
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 1.1e-99 367.5 263 73.8
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 1.1e-99 367.5 263 73.8
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 1.8e-99 366.7 261 74.7
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 1.8e-99 366.7 257 75.5
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 2.4e-99 366.3 261 74.3
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 2.4e-99 366.3 263 73.8
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 5.3e-99 365.2 291 69.4
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 5.3e-99 365.2 257 73.9
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 7.0e-99 364.8 263 73.8
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 7.0e-99 364.8 255 75.7
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 9.1e-99 364.4 270 71.9
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 9.1e-99 364.4 274 71.2
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 1.2e-98 364.0 257 75.5
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 1.2e-98 364.0 257 74.7
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 1.6e-98 363.6 258 74.4
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 2.0e-98 363.2 257 74.7
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 2.0e-98 363.2 266 72.9
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 2.0e-98 363.2 254 75.2
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 2.7e-98 362.8 257 74.7
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 3.5e-98 362.5 257 74.7
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 3.5e-98 362.5 267 72.7
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 4.5e-98 362.1 258 75.2
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 4.5e-98 362.1 257 74.3
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 4.5e-98 362.1 264 73.1
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 5.9e-98 361.7 264 72.3
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 7.7e-98 361.3 261 73.6
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 7.7e-98 361.3 257 74.3
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 7.7e-98 361.3 259 73.7
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 1.0e-97 360.9 269 71.4
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 1.3e-97 360.5 253 75.1
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 1.3e-97 360.5 261 72.8
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 1.7e-97 360.1 254 74.4
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 5.0e-97 358.6 257 73.9
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 5.0e-97 358.6 263 72.6
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 6.5e-97 358.2 274 70.8
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 6.5e-97 358.2 274 71.2
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 8.5e-97 357.8 257 72.8
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 8.5e-97 357.8 254 73.6
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 2.5e-96 356.3 257 72.8
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 2.5e-96 356.3 274 69.0
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 7.2e-96 354.8 257 72.4
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 3.6e-95 352.4 257 72.0
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 6.1e-95 351.7 279 68.5
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 8.0e-95 351.3 257 72.8
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 1.4e-94 350.5 284 66.9
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 1.4e-94 350.5 284 66.9
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 1.8e-94 350.1 267 70.4
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.8e-91 340.1 279 68.1
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 7.7e-90 334.7 232 76.3
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 1.3e-89 334.0 327 58.4
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 4.2e-88 328.9 234 74.4
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 1.8e-83 313.5 236 71.6
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 1.8e-83 313.5 225 74.7
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 3.5e-82 309.3 278 61.5
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 7.8e-82 308.1 218 75.7
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 2.3e-81 306.6 221 73.8
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 5.0e-81 305.4 241 69.3
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 1.9e-80 303.5 225 72.4
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 4.3e-80 302.4 253 68.0
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.8e-78 297.0 247 68.0
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 4.0e-78 295.8 247 67.2
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 6.8e-78 295.0 287 61.0
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 2.0e-77 293.5 287 60.6
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 4.4e-77 292.4 269 64.3
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 1.8e-75 287.0 242 65.7
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 9.2e-75 284.6 192 76.0
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 2.3e-73 280.0 287 58.9
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 1.2e-71 274.2 244 59.4
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 4.0e-70 269.2 295 53.2
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 2.6e-69 266.5 267 58.8
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 1.0e-65 254.6 190 71.6
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 6.2e-63 245.4 280 52.9
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.8e-62 243.8 295 50.5
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.2e-58 231.1 247 54.3
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 3.4e-53 213.0 239 54.8
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 1.1e-51 208.0 224 58.0
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 4.7e-47 192.6 224 55.8
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 2.2e-44 183.7 139 72.7
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 5.4e-43 179.1 166 62.0
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 3.5e-42 176.4 119 75.6
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 1.4e-35 154.5 98 80.6
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 1.0e-33 148.3 142 62.0
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 2.5e-32 143.7 92 81.5
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 2.4e-30 137.1 204 48.5
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 7.1e-27 125.6 126 57.9
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 2.1e-26 124.0 126 57.1
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 9.0e-22 108.6 90 64.4
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 2.3e-17 94.0 79 63.3
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 4.8e-15 86.3 103 52.4
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 2.9e-12 77.0 60 65.0
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 3.0e-09 67.0 206 30.6
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 9.7e-08 62.0 45 68.9
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 9.1e-06 55.5 32 84.4


User provided reference genes

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