Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 1.6e-89 332.8 176 100.0
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 9.0e-16 87.8 196 31.6
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 3.8e-14 82.4 151 35.1
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 1.3e-11 73.9 104 38.5
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 2.3e-11 73.2 110 40.9
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 3.0e-11 72.8 141 31.9
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 3.9e-11 72.4 102 41.2
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 5.1e-11 72.0 102 41.2
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 6.7e-11 71.6 106 41.5
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 3.3e-10 69.3 103 35.9
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 4.3e-10 68.9 106 40.6
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 4.3e-10 68.9 106 39.6
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 7.4e-10 68.2 105 38.1
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 9.6e-10 67.8 116 35.3
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 1.3e-09 67.4 108 37.0
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.6e-09 67.0 116 34.5
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 1.6e-09 67.0 86 43.0
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 2.1e-09 66.6 146 32.9
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 2.8e-09 66.2 105 38.1
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 3.7e-09 65.9 108 35.2
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 3.7e-09 65.9 105 39.0
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 4.8e-09 65.5 155 28.4
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 6.2e-09 65.1 102 37.3
Cre09.g402350 Chlamydomonas reinhardtii HOM05D004833 ORTHO05D005671 8.1e-09 64.7 118 33.9
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 8.1e-09 64.7 116 36.2
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 1.1e-08 64.3 104 38.5
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 1.4e-08 63.9 96 38.5
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 1.4e-08 63.9 143 30.8
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 1.4e-08 63.9 113 36.3
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 1.8e-08 63.5 91 37.4
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 1.8e-08 63.5 168 29.2
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 1.8e-08 63.5 91 36.3
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 2.4e-08 63.2 131 30.5
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.4e-08 63.2 81 44.4
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 4.0e-08 62.4 129 30.2
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 4.0e-08 62.4 109 32.1
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 5.3e-08 62.0 98 39.8
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 6.9e-08 61.6 103 38.8
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 6.9e-08 61.6 101 36.6
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 9.0e-08 61.2 81 39.5
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 9.0e-08 61.2 106 38.7
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 1.2e-07 60.8 173 27.7
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 1.2e-07 60.8 108 33.3
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 1.2e-07 60.8 109 34.9
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 1.5e-07 60.5 102 33.3
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 1.5e-07 60.5 95 36.8
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 1.5e-07 60.5 102 35.3
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 2.0e-07 60.1 97 35.1
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 2.0e-07 60.1 109 33.9
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 2.0e-07 60.1 100 35.0
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.0e-07 60.1 110 36.4
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.0e-07 60.1 110 36.4
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 2.0e-07 60.1 110 36.4
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 2.6e-07 59.7 106 34.9
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 2.6e-07 59.7 116 36.2
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 2.6e-07 59.7 81 39.5
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 4.5e-07 58.9 101 35.6
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 4.5e-07 58.9 82 45.1
Mapoly0085s0039 Marchantia polymorpha HOM05D004833 ORTHO05D005671 4.5e-07 58.9 71 45.1
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 5.8e-07 58.5 104 32.7
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 5.8e-07 58.5 101 34.7
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 5.8e-07 58.5 97 36.1
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 5.8e-07 58.5 148 29.7
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 7.6e-07 58.2 90 34.4
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 7.6e-07 58.2 90 34.4
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 7.6e-07 58.2 108 35.2
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 7.6e-07 58.2 108 35.2
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 7.6e-07 58.2 102 37.3
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 7.6e-07 58.2 118 31.4
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 9.9e-07 57.8 111 34.2
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 9.9e-07 57.8 118 31.4
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 1.3e-06 57.4 111 31.5
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 1.3e-06 57.4 176 25.0
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.3e-06 57.4 93 35.5
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 1.3e-06 57.4 109 31.2
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 1.7e-06 57.0 166 28.3
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 1.7e-06 57.0 175 28.6
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 2.2e-06 56.6 113 31.9
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 2.2e-06 56.6 108 34.3
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 2.2e-06 56.6 102 32.4
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 2.2e-06 56.6 112 34.8
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 2.2e-06 56.6 90 32.2
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 2.9e-06 56.2 107 36.4
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 3.8e-06 55.8 114 33.3
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 3.8e-06 55.8 109 32.1
SalBow5G1669 Salvia bowleyana HOM05D004938 ORTHO05D006035 3.8e-06 55.8 159 30.2
SalBow5G2418 Salvia bowleyana HOM05D004938 ORTHO05D006035 3.8e-06 55.8 159 30.2
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 4.9e-06 55.5 115 32.2
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 4.9e-06 55.5 115 32.2
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 4.9e-06 55.5 108 33.3
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 6.4e-06 55.1 109 32.1
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 6.4e-06 55.1 78 38.5
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 8.4e-06 54.7 95 33.7
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 8.4e-06 54.7 108 35.2
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 8.4e-06 54.7 108 35.2


User provided reference genes

Program Settings