Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0044s0085 Marchantia polymorpha HOM05D021093 ORTHO05D003448 6.1e-173 610.9 351 100.0
Pp3c16_19040 Physcomitrium patens HOM05D021093 ORTHO05D026057 9.2e-12 75.5 68 63.2
Pp3c9_19950 Physcomitrium patens HOM05D021093 ORTHO05D026057 7.8e-11 72.4 72 58.3
Pp3c15_15270 Physcomitrium patens HOM05D021093 ORTHO05D026057 5.6e-09 66.2 72 52.8
Manes.10G152200 Manihot esculenta HOM05D003104 ORTHO05D003448 8.1e-08 62.4 60 55.0
Phvul.007G259600 Phaseolus vulgaris HOM05D003104 ORTHO05D003448 1.8e-07 61.2 53 60.4
ECA247G3561 Erigeron canadensis HOM05D003104 ORTHO05D003448 2.3e-07 60.8 39 71.8
Glyma.08G157900 Glycine max HOM05D003104 ORTHO05D003448 3.1e-07 60.5 44 59.1
Glyma.09G111800 Glycine max HOM05D003104 ORTHO05D003448 3.1e-07 60.5 67 46.3
Carub.0005s2484 Capsella rubella HOM05D003104 ORTHO05D003448 5.2e-07 59.7 61 54.1
Lalb_Chr20g0108211 Lupinus albus HOM05D003104 ORTHO05D003448 5.2e-07 59.7 56 53.6
TAR633G2208 Trochodendron aralioides HOM05D003104 ORTHO05D003448 5.2e-07 59.7 59 55.9
Lj5g0000243 Lotus japonicus HOM05D003104 ORTHO05D003448 6.8e-07 59.3 65 53.8
Potri.006G192100 Populus trichocarpa HOM05D003104 ORTHO05D003448 8.9e-07 58.9 54 57.4
TAR633G0631 Trochodendron aralioides HOM05D003104 ORTHO05D003448 8.9e-07 58.9 59 55.9
MD14G1058100 Malus domestica HOM05D003104 ORTHO05D003448 1.2e-06 58.5 66 48.5
Potri.001G230800 Populus trichocarpa HOM05D003104 ORTHO05D003448 1.2e-06 58.5 54 57.4
TAR623G0313 Trochodendron aralioides HOM05D003104 ORTHO05D003448 1.2e-06 58.5 52 57.7
vmacro07909 Vaccinium macrocarpon HOM05D003104 ORTHO05D003448 1.2e-06 58.5 52 59.6
BcaC02g09980 Brassica carinata HOM05D003104 ORTHO05D003448 1.5e-06 58.2 62 53.2
C04p34380 Brassica napus HOM05D003104 ORTHO05D003448 1.5e-06 58.2 62 53.2
BolC4t25000H Brassica oleracea HOM05D003104 ORTHO05D003448 1.5e-06 58.2 62 53.2
COL.COLO4_33986 Corchorus olitorius HOM05D003104 ORTHO05D003448 1.5e-06 58.2 53 56.6
Dinv24074 Davidia involucrata HOM05D003104 ORTHO05D003448 1.5e-06 58.2 57 52.6
Lsat_1_v5_gn_9_26201 Lactuca sativa HOM05D003104 ORTHO05D003448 1.5e-06 58.2 39 66.7
Prupe.7G076600 Prunus persica HOM05D003104 ORTHO05D003448 1.5e-06 58.2 53 54.7
Sabra16G0050100 Salix brachista HOM05D003104 ORTHO05D003448 1.5e-06 58.2 54 57.4
CSS0036189 Camellia sinensis var. sinensis HOM05D003104 ORTHO05D003448 2.0e-06 57.8 54 53.7
Dinv14298 Davidia involucrata HOM05D003104 ORTHO05D003448 2.0e-06 57.8 54 53.7
Duzib106G0856 Durio zibethinus HOM05D003104 ORTHO05D003448 2.0e-06 57.8 54 55.6
Lj9P620T33 Lonicera japonica HOM05D003104 ORTHO05D003448 2.0e-06 57.8 52 59.6
PGR004G2754 Punica granatum HOM05D003104 ORTHO05D003448 2.0e-06 57.8 53 54.7
TWI77G0731 Tripterygium wilfordii HOM05D003104 ORTHO05D003448 2.0e-06 57.8 56 58.9
VMungo0720G0553 Vigna mungo HOM05D003104 ORTHO05D003448 2.0e-06 57.8 52 55.8
BcaB02g08283 Brassica carinata HOM05D003104 ORTHO05D003448 2.6e-06 57.4 62 51.6
DCAR_013546 Daucus carota HOM05D003104 ORTHO05D003448 2.6e-06 57.4 32 78.1
Thhalv10006263m.g Eutrema salsugineum HOM05D003104 ORTHO05D003448 2.6e-06 57.4 66 50.0
FvH4_6g22390 Fragaria vesca HOM05D003104 ORTHO05D003448 2.6e-06 57.4 56 51.8
FAN02G3683 Fragaria x ananassa HOM05D003104 ORTHO05D003448 2.6e-06 57.4 56 51.8
FAN05G4633 Fragaria x ananassa HOM05D006059 ORTHO05D003448 2.6e-06 57.4 56 51.8
FAN09G1280 Fragaria x ananassa HOM05D003104 ORTHO05D003448 2.6e-06 57.4 56 51.8
FAN14G0351 Fragaria x ananassa HOM05D003104 ORTHO05D003448 2.6e-06 57.4 56 51.8
FAN14G4340 Fragaria x ananassa HOM05D003104 ORTHO05D003448 2.6e-06 57.4 56 51.8
Hma1.2p1_0128F.1_g059810 Hydrangea macrophylla HOM05D003104 ORTHO05D003448 2.6e-06 57.4 83 43.4
AT3G58000 Arabidopsis thaliana HOM05D003104 ORTHO05D003448 3.4e-06 57.0 61 55.7
ClCG10G017500 Citrullus lanatus HOM05D003104 ORTHO05D003448 3.4e-06 57.0 52 55.8
MELO3C009629.2 Cucumis melo HOM05D003104 ORTHO05D003448 3.4e-06 57.0 39 66.7
Hma1.2p1_0386F.1_g141860 Hydrangea macrophylla HOM05D003104 ORTHO05D003448 3.4e-06 57.0 53 54.7
MBI04_g33964_MAGBIO Magnolia biondii HOM05D003104 ORTHO05D003448 3.4e-06 57.0 85 44.7
MD12G1057500 Malus domestica HOM05D003104 ORTHO05D003448 3.4e-06 57.0 34 70.6
Potri.016G046000 Populus trichocarpa HOM05D003104 ORTHO05D003448 3.4e-06 57.0 47 59.6
Prupe.2G002600 Prunus persica HOM05D003104 ORTHO05D003448 3.4e-06 57.0 64 53.1
TWI74G1180 Tripterygium wilfordii HOM05D003104 ORTHO05D003448 3.4e-06 57.0 52 53.8
AagrBONN_evm.TU.Sc2ySwM_228.2730 Anthoceros agrestis HOM05D003104 ORTHO05D003448 4.4e-06 56.6 67 52.2
Aqoxy2G00080 Aquilegia oxysepala HOM05D003104 ORTHO05D003448 4.4e-06 56.6 48 56.2
CARHR168320 Cardamine hirsuta HOM05D003104 ORTHO05D003448 4.4e-06 56.6 61 52.5
Nn2g15676 Nelumbo nucifera HOM05D003104 ORTHO05D003448 4.4e-06 56.6 45 64.4
RcHm_v2.0_Chr3g0479721 Rosa chinensis HOM05D003104 ORTHO05D003448 4.4e-06 56.6 58 51.7
Sabra16G0138200 Salix brachista HOM05D003104 ORTHO05D003448 4.4e-06 56.6 53 60.4
Sp5g04720 Schrenkiella parvula HOM05D003104 ORTHO05D003448 4.4e-06 56.6 62 51.6
Ciclev10013474m.g Citrus clementina HOM05D003104 ORTHO05D003448 5.8e-06 56.2 60 55.0
CsaV3_3G038860 Cucumis sativus L. HOM05D003104 ORTHO05D003448 5.8e-06 56.2 63 52.4
Lalb_Chr25g0283651 Lupinus albus HOM05D003104 ORTHO05D003448 5.8e-06 56.2 56 51.8
Atru.chr8.1107 Acer truncatum HOM05D003104 ORTHO05D003448 7.5e-06 55.8 29 82.8
Atru.chr8.1109 Acer truncatum HOM05D003104 ORTHO05D003448 7.5e-06 55.8 29 82.8
AL5G39650 Arabidopsis lyrata HOM05D003104 ORTHO05D003448 7.5e-06 55.8 61 54.1
CAN.G128.39 Capsicum annuum HOM05D003104 ORTHO05D003448 7.5e-06 55.8 29 82.8
Haze_19985 Corylus avellana HOM05D003104 ORTHO05D003448 7.5e-06 55.8 66 45.5
Haze_19986 Corylus avellana HOM05D003104 ORTHO05D003448 7.5e-06 55.8 66 45.5
Duzib128G0074 Durio zibethinus HOM05D003104 ORTHO05D003448 7.5e-06 55.8 55 50.9
Sed0021075 Sechium edule HOM05D003104 ORTHO05D003448 7.5e-06 55.8 47 57.4
BcaC07g40174 Brassica carinata HOM05D003104 ORTHO05D003448 9.8e-06 55.5 55 50.9
A04p02800 Brassica napus HOM05D003104 ORTHO05D003448 9.8e-06 55.5 66 47.0
A09p50830 Brassica napus HOM05D003104 ORTHO05D003448 9.8e-06 55.5 53 52.8
BolC8t50952H Brassica oleracea HOM05D003104 ORTHO05D003448 9.8e-06 55.5 53 52.8
BraA09t40529Z Brassica rapa HOM05D003104 ORTHO05D003448 9.8e-06 55.5 53 52.8
Glyma.15G268300 Glycine max HOM05D003104 ORTHO05D003448 9.8e-06 55.5 80 41.2
Manes.09G035200 Manihot esculenta HOM05D003104 ORTHO05D003448 9.8e-06 55.5 61 49.2
SGA_v2.0_scaffold274G46484 Striga asiatica HOM05D003104 ORTHO05D003448 9.8e-06 55.5 39 69.2
Thecc.05G171100 Theobroma cacao HOM05D003104 ORTHO05D003448 9.8e-06 55.5 51 54.9
TAR636G0094 Trochodendron aralioides HOM05D003104 ORTHO05D003448 9.8e-06 55.5 51 54.9


User provided reference genes

Program Settings