Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0037s0099 Marchantia polymorpha HOM05D029505 ORTHO05D002751 1.0e-217 760.0 440 100.0
Mapoly0001s0312 Marchantia polymorpha HOM05D029505 ORTHO05D006869 1.2e-45 188.3 294 40.8
Mapoly0011s0057 Marchantia polymorpha HOM05D029505 ORTHO05D006869 1.2e-37 161.8 281 35.2
AagrBONN_evm.TU.Sc2ySwM_117.2839 Anthoceros agrestis HOM05D002537 ORTHO05D006869 6.1e-21 106.3 128 41.4
AagrBONN_evm.TU.Sc2ySwM_344.4466 Anthoceros agrestis HOM05D002537 ORTHO05D002751 4.8e-18 96.7 284 27.1
Mapoly0004s0008 Marchantia polymorpha HOM05D029505 ORTHO05D006869 8.2e-18 95.9 210 35.7
SMO115G0244 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 5.9e-16 89.7 127 39.4
Mapoly0142s0034 Marchantia polymorpha HOM05D002537 ORTHO05D002751 5.7e-11 73.2 123 34.1
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 1.7e-10 71.6 139 31.7
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 1.2e-08 65.5 120 32.5
Hund03260 Selenicereus undatus HOM05D006943 ORTHO05D008565 5.9e-08 63.2 121 30.6
ATR0807G251 Amborella trichopoda HOM05D003725 ORTHO05D004294 7.7e-08 62.8 127 29.1
SalBow6G4785 Salvia bowleyana HOM05D003725 ORTHO05D004294 1.3e-07 62.0 123 31.7
SalBow8G5628 Salvia bowleyana HOM05D003725 ORTHO05D004294 1.3e-07 62.0 123 31.7
Cpa.g.sc192.2 Carica papaya HOM05D003725 ORTHO05D004294 2.9e-07 60.8 123 31.7
Medtr7g020870 Medicago truncatula HOM05D002537 ORTHO05D002751 3.8e-07 60.5 127 31.5
SEGI_15899 Sequoiadendron giganteum HOM05D002537 ORTHO05D002751 3.8e-07 60.5 123 33.3
Glyma.08G257500 Glycine max HOM05D002537 ORTHO05D002751 5.0e-07 60.1 122 32.0
CBR_g48718 Chara braunii HOM05D002222 ORTHO05D001702 6.5e-07 59.7 114 31.6
Mapoly0013s0135 Marchantia polymorpha HOM05D002537 ORTHO05D002751 6.5e-07 59.7 117 29.1
Pp3c4_22830 Physcomitrium patens HOM05D002537 ORTHO05D002751 6.5e-07 59.7 115 29.6
Pp3c4_22880 Physcomitrium patens HOM05D002537 ORTHO05D002751 6.5e-07 59.7 115 29.6
AagrBONN_evm.TU.Sc2ySwM_117.2665 Anthoceros agrestis HOM05D003725 ORTHO05D004294 8.5e-07 59.3 122 28.7
Ca_07076_v3 Cicer arietinum L. HOM05D002537 ORTHO05D002751 8.5e-07 59.3 127 31.5
Pp3c17_1430 Physcomitrium patens HOM05D003725 ORTHO05D004294 8.5e-07 59.3 124 30.6
Psat3g190160 Pisum sativum HOM05D002537 ORTHO05D002751 8.5e-07 59.3 127 30.7
ATR0582G285 Amborella trichopoda HOM05D002537 ORTHO05D002751 1.1e-06 58.9 132 31.8
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 1.1e-06 58.9 131 31.3
VMungo1383G0533 Vigna mungo HOM05D002537 ORTHO05D002751 1.1e-06 58.9 126 31.7
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 1.5e-06 58.5 131 31.3
Phvul.008G019400 Phaseolus vulgaris HOM05D002537 ORTHO05D002751 1.5e-06 58.5 126 31.7
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 1.5e-06 58.5 117 30.8
CSS0033009 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 1.9e-06 58.2 125 28.8
ClCG06G001740 Citrullus lanatus HOM05D002537 ORTHO05D002751 1.9e-06 58.2 118 32.2
Glyma.18G281800 Glycine max HOM05D002537 ORTHO05D002751 1.9e-06 58.2 126 30.2
Lj1g0023956 Lotus japonicus HOM05D002537 ORTHO05D002751 1.9e-06 58.2 122 31.1
MBI10_g39274_MAGBIO Magnolia biondii HOM05D002537 ORTHO05D002751 3.2e-06 57.4 129 30.2
MELO3C022356.2 Cucumis melo HOM05D002537 ORTHO05D002751 4.2e-06 57.0 118 31.4
CsaV3_6G007760 Cucumis sativus L. HOM05D002537 ORTHO05D002751 4.2e-06 57.0 118 31.4
COL.COLO4_30941 Corchorus olitorius HOM05D003725 ORTHO05D004294 5.5e-06 56.6 121 29.8
Mapoly0043s0010 Marchantia polymorpha HOM05D002537 ORTHO05D002751 5.5e-06 56.6 155 26.5
Pp3c26_2600 Physcomitrium patens HOM05D002537 ORTHO05D002751 5.5e-06 56.6 115 28.7
Pp3c26_2630 Physcomitrium patens HOM05D002537 ORTHO05D002751 5.5e-06 56.6 115 28.7
TAR371G1050 Trochodendron aralioides HOM05D002537 ORTHO05D002751 5.5e-06 56.6 115 31.3
EL10Ac2g03684 Beta vulgaris HOM05D006943 ORTHO05D008565 7.2e-06 56.2 60 36.7
CARHR127560 Cardamine hirsuta HOM05D002537 ORTHO05D002751 7.2e-06 56.2 150 28.7
Nn7g38034 Nelumbo nucifera HOM05D003725 ORTHO05D004294 7.2e-06 56.2 120 29.2
Os02g0516800 Oryza sativa ssp. japonica HOM05D002537 ORTHO05D002751 7.2e-06 56.2 80 32.5
Prupe.4G107000 Prunus persica HOM05D003725 ORTHO05D004294 7.2e-06 56.2 120 30.8
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 7.2e-06 56.2 124 29.0
unitig_37.g12059 Utricularia gibba HOM05D003725 ORTHO05D004294 7.2e-06 56.2 125 28.8
AL4G29220 Arabidopsis lyrata HOM05D002537 ORTHO05D002751 9.4e-06 55.8 150 28.7
MSTRG.7579 Avicennia marina HOM05D003725 ORTHO05D004294 9.4e-06 55.8 119 28.6
CDE02G2776 Ceratophyllum demersum HOM05D002537 ORTHO05D002751 9.4e-06 55.8 120 30.8
Mapoly0037s0146 Marchantia polymorpha HOM05D003725 ORTHO05D004294 9.4e-06 55.8 112 29.5
Mapoly0056s0059 Marchantia polymorpha HOM05D002537 ORTHO05D002751 9.4e-06 55.8 114 29.8
SEGI_24808 Sequoiadendron giganteum HOM05D003725 ORTHO05D004294 9.4e-06 55.8 108 30.6
HPP92_021992 Vanilla planifolia HOM05D006943 ORTHO05D008565 9.4e-06 55.8 137 29.9


User provided reference genes

Program Settings