Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 0.0e+00 1126.3 573 100.0
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 6.1e-114 415.6 561 43.5
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 5.9e-109 399.1 283 61.1
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 2.3e-105 387.1 268 65.3
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 4.1e-102 376.3 248 68.1
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 2.3e-100 370.5 272 61.4
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 2.9e-100 370.2 274 61.3
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 1.9e-99 367.5 267 61.4
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.6e-98 363.2 261 63.2
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 6.1e-98 362.5 500 42.8
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 8.0e-98 362.1 267 61.0
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 1.4e-97 361.3 281 59.1
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 2.3e-97 360.5 267 61.8
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 3.0e-97 360.1 262 61.5
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 5.2e-97 359.4 347 51.3
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 6.8e-97 359.0 275 59.6
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 1.2e-96 358.2 269 59.9
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 1.2e-96 358.2 270 59.6
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.5e-96 357.8 267 61.4
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 2.0e-96 357.5 267 61.8
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 2.6e-96 357.1 302 55.6
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 3.4e-96 356.7 489 43.4
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 3.4e-96 356.7 347 52.2
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 4.4e-96 356.3 292 56.2
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 4.4e-96 356.3 284 57.0
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 4.4e-96 356.3 267 59.9
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 5.8e-96 355.9 264 59.5
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 7.5e-96 355.5 267 61.4
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 1.3e-95 354.8 299 56.5
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 2.9e-95 353.6 275 58.9
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 3.7e-95 353.2 274 58.8
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 4.9e-95 352.8 512 41.6
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 1.1e-94 351.7 274 57.7
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 1.1e-94 351.7 267 59.2
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 1.1e-94 351.7 510 42.4
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.1e-94 351.7 386 47.9
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 1.1e-94 351.7 338 51.2
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 1.4e-94 351.3 297 56.2
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 1.4e-94 351.3 280 58.6
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.9e-94 350.9 268 59.3
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 1.9e-94 350.9 268 59.3
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 1.9e-94 350.9 273 58.2
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 2.4e-94 350.5 275 60.4
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 2.4e-94 350.5 262 59.5
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 3.2e-94 350.1 268 58.6
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 4.1e-94 349.7 372 48.1
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 5.4e-94 349.4 265 58.9
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 5.4e-94 349.4 270 58.9
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 9.2e-94 348.6 313 54.3
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 1.2e-93 348.2 277 58.5
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 2.7e-93 347.1 271 57.9
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 1.0e-92 345.1 501 40.7
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 1.3e-92 344.7 339 52.2
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 1.7e-92 344.4 358 47.8
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 1.7e-92 344.4 339 51.9
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 2.3e-92 344.0 300 53.3
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 2.3e-92 344.0 527 43.3
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 2.3e-92 344.0 276 58.7
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 3.9e-92 343.2 265 59.6
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 5.0e-92 342.8 259 59.5
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 6.6e-92 342.4 274 58.4
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.1e-91 341.7 266 59.0
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 1.2e-90 338.2 351 49.3
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.6e-90 337.8 290 65.9
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 1.6e-90 337.8 273 58.2
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.1e-90 337.4 266 58.3
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 6.2e-90 335.9 280 55.7
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 1.4e-89 334.7 350 49.7
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.8e-89 334.3 494 42.5
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 1.8e-89 334.3 359 49.6
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 3.1e-89 333.6 307 54.1
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 4.0e-89 333.2 310 51.6
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 5.2e-89 332.8 266 55.6
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 6.8e-89 332.4 358 49.2
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 8.9e-89 332.0 298 52.3
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 1.2e-88 331.6 273 57.5
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 1.5e-88 331.3 287 56.1
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 2.0e-88 330.9 277 54.5
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 5.8e-88 329.3 264 57.6
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 2.2e-87 327.4 270 58.1
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 8.3e-87 325.5 499 40.5
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 1.4e-86 324.7 361 47.4
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 3.2e-86 323.6 299 53.5
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 4.1e-86 323.2 311 50.5
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 4.1e-86 323.2 270 56.3
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 4.1e-86 323.2 286 55.2
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 5.4e-86 322.8 273 55.7
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 7.0e-86 322.4 264 58.0
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 7.0e-86 322.4 273 55.7
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 2.1e-85 320.9 345 47.8
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 2.1e-85 320.9 351 50.4
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 2.7e-85 320.5 345 47.8
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 1.0e-84 318.5 299 53.2
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 1.0e-84 318.5 273 55.3
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 3.0e-84 317.0 289 52.9
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 3.9e-84 316.6 343 47.5
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 3.9e-84 316.6 304 52.3
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 5.1e-84 316.2 319 50.5
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 5.1e-84 316.2 299 54.8
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 1.1e-83 315.1 297 51.5
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 9.5e-83 312.0 310 52.9
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 8.1e-82 308.9 283 52.3
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 1.5e-80 304.7 254 55.9
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 2.2e-79 300.8 268 50.0
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 2.9e-79 300.4 528 40.0
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 4.1e-78 296.6 269 52.4
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 6.6e-76 289.3 232 58.2
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 2.1e-74 284.3 314 47.1
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 1.8e-73 281.2 305 46.6
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 4.4e-72 276.6 309 49.8
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 6.0e-69 266.2 196 61.7
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 3.0e-68 263.8 327 42.5
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 2.5e-67 260.8 266 48.5
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.1e-61 241.1 276 43.8
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.3e-60 237.7 270 43.7
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 1.3e-58 231.9 179 58.1
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 9.0e-57 225.7 173 60.1
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 9.0e-49 199.1 225 44.4
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.5e-48 198.4 272 41.5
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 3.3e-43 180.6 272 39.0
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 2.8e-42 177.6 306 36.3
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 6.2e-42 176.4 273 37.0
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 1.4e-41 175.3 285 38.6
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 3.4e-40 170.6 131 61.1
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 3.4e-40 170.6 350 34.6
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 2.1e-37 161.4 133 60.2
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 2.7e-37 161.0 136 53.7
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 3.9e-36 157.1 120 58.3
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 3.9e-36 157.1 137 52.6
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 2.1e-29 134.8 102 58.8
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 8.8e-28 129.4 164 41.5
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 8.8e-28 129.4 365 28.8
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 3.0e-20 104.4 332 27.7
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 3.9e-20 104.0 97 50.5
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 5.1e-20 103.6 82 59.8
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 2.0e-19 101.7 62 67.7
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 2.2e-18 98.2 74 59.5
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 7.7e-16 89.7 119 41.2
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 8.2e-10 69.7 55 52.7
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.0e-08 65.1 62 50.0
CSS0014831 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.9e-07 61.2 37 67.6
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 5.5e-06 57.0 61 42.6
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 5.5e-06 57.0 63 42.9
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 7.2e-06 56.6 102 33.3


User provided reference genes

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