Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 3.4e-248 861.3 466 100.0
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 8.2e-117 424.9 250 80.0
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 3.9e-111 406.0 226 83.6
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 5.1e-111 405.6 226 83.6
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 6.7e-111 405.2 249 77.1
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 8.8e-111 404.8 256 76.6
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.1e-110 404.4 240 79.2
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.1e-110 404.4 240 79.2
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 1.1e-110 404.4 240 79.2
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 1.1e-110 404.4 271 73.4
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.5e-110 404.1 226 83.6
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 2.0e-110 403.7 241 79.3
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 3.3e-110 402.9 469 52.5
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 4.4e-110 402.5 226 83.2
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.4e-110 402.5 226 83.2
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 5.7e-110 402.1 257 76.3
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 7.4e-110 401.7 226 82.3
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 9.7e-110 401.4 269 72.5
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 9.7e-110 401.4 240 78.8
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 1.3e-109 401.0 461 56.2
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.3e-109 401.0 226 82.7
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.7e-109 400.6 226 82.7
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 1.7e-109 400.6 271 72.3
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 2.8e-109 399.8 233 78.5
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 3.7e-109 399.4 226 83.2
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 6.3e-109 398.7 226 82.3
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 1.1e-108 397.9 240 77.9
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 1.4e-108 397.5 225 82.7
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 1.4e-108 397.5 240 77.5
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 1.8e-108 397.1 233 79.8
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 4.1e-108 396.0 223 83.0
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 5.3e-108 395.6 226 82.3
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 5.3e-108 395.6 226 81.4
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 9.1e-108 394.8 278 69.4
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 1.2e-107 394.4 226 81.0
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 1.2e-107 394.4 226 81.4
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 1.6e-107 394.0 242 76.9
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 2.0e-107 393.7 257 73.9
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 5.9e-107 392.1 225 81.8
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 7.7e-107 391.7 226 80.5
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 7.7e-107 391.7 243 76.5
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 7.7e-107 391.7 242 76.0
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 1.7e-106 390.6 240 76.7
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 2.9e-106 389.8 240 77.1
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 3.8e-106 389.4 270 72.2
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 6.5e-106 388.7 274 70.4
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 8.5e-106 388.3 240 76.7
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 8.5e-106 388.3 229 78.2
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 8.5e-106 388.3 229 78.2
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 1.1e-105 387.9 226 77.4
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 1.5e-105 387.5 254 74.4
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 1.5e-105 387.5 465 56.1
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 5.5e-105 385.6 466 54.9
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 7.2e-105 385.2 465 54.0
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 2.1e-104 383.6 274 69.3
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 2.7e-104 383.3 467 55.7
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 2.7e-104 383.3 226 80.1
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 8.0e-104 381.7 226 79.6
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 1.8e-103 380.6 219 82.6
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 5.2e-103 379.0 219 82.2
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 2.0e-102 377.1 280 67.5
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 2.2e-101 373.6 225 76.9
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 3.7e-101 372.9 225 77.8
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 6.3e-101 372.1 275 67.6
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 1.8e-100 370.5 281 66.5
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 2.4e-100 370.2 459 50.8
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 5.3e-100 369.0 464 46.3
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 1.6e-99 367.5 232 75.4
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 2.0e-99 367.1 267 68.9
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 2.0e-99 367.1 222 78.4
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 3.5e-99 366.3 265 67.5
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 3.5e-99 366.3 224 77.2
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 3.5e-99 366.3 225 76.4
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 1.3e-98 364.4 486 49.4
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 1.7e-98 364.0 465 47.3
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 2.9e-98 363.2 225 76.0
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 5.0e-98 362.5 270 67.4
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 8.5e-98 361.7 230 73.9
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-97 361.3 207 82.6
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 1.5e-97 360.9 225 75.1
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 1.9e-97 360.5 469 48.6
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 2.5e-97 360.1 343 56.0
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 2.5e-97 360.1 230 74.8
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 2.5e-97 360.1 225 75.1
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 4.2e-97 359.4 225 75.6
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 4.2e-97 359.4 225 75.6
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 4.2e-97 359.4 225 75.6
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 5.5e-97 359.0 225 75.6
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 7.2e-97 358.6 230 72.6
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 7.2e-97 358.6 268 66.8
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 7.2e-97 358.6 265 66.4
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 9.4e-97 358.2 225 74.7
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 9.4e-97 358.2 265 66.4
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 6.1e-96 355.5 324 58.3
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 2.6e-94 350.1 464 51.5
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 3.4e-94 349.7 207 78.7
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 4.4e-94 349.4 463 48.4
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 2.8e-93 346.7 255 67.5
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 5.4e-92 342.4 225 70.7
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 1.3e-90 337.8 463 47.3
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 3.2e-89 333.2 263 62.4
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 5.5e-89 332.4 344 52.6
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 7.2e-89 332.0 342 53.2
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 1.0e-79 301.6 172 82.6
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 4.4e-78 296.2 176 78.4
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 3.7e-77 293.1 155 83.9
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 1.1e-76 291.6 176 78.4
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 4.6e-75 286.2 195 70.8
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 4.4e-70 269.6 149 79.2
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 7.8e-67 258.8 160 72.5
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 6.2e-64 249.2 225 56.0
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 1.7e-61 241.1 218 53.2
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.1e-60 238.4 122 86.1
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 2.5e-57 227.3 204 53.9
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 4.4e-54 216.5 130 79.2
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 8.4e-53 212.2 175 60.0
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 7.8e-51 205.7 144 70.1
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 8.6e-50 202.2 111 80.2
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 8.1e-48 195.7 371 43.9
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 3.1e-47 193.7 192 57.8
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 1.2e-46 191.8 102 84.3
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 1.9e-44 184.5 130 67.7
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 5.4e-44 183.0 130 69.2
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 4.6e-43 179.9 97 85.6
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 3.3e-41 173.7 129 62.8
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 1.3e-40 171.8 351 42.2
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 2.1e-40 171.0 96 79.2
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 4.8e-40 169.9 103 79.6
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 4.8e-40 169.9 97 80.4
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.1e-39 168.7 128 67.2
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 6.9e-39 166.0 96 77.1
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 3.2e-36 157.1 84 83.3
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 9.3e-36 155.6 86 83.7
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 3.5e-35 153.7 83 81.9
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 6.6e-34 149.4 91 81.3
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 1.6e-32 144.8 80 86.2
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 2.1e-32 144.4 80 83.8
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 6.9e-31 139.4 80 83.8
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 1.7e-29 134.8 93 75.3
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 4.9e-29 133.3 84 79.8
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.8e-26 124.8 84 71.4
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 2.5e-25 120.9 79 77.2
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 1.8e-23 114.8 77 72.7
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 1.9e-20 104.8 60 83.3
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 4.3e-17 93.6 93 57.0
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 5.3e-15 86.7 49 87.8
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 5.3e-15 86.7 54 64.8
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.0e-14 84.7 71 63.4
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 4.5e-14 83.6 61 70.5
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 1.0e-13 82.4 53 64.2
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 2.9e-13 80.9 61 60.7
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.6e-11 73.6 304 38.8
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 1.3e-10 72.0 43 79.1
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 3.4e-06 57.4 90 38.9


User provided reference genes

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