Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0007s0139 Marchantia polymorpha HOM05D007414 ORTHO05D009482 8.9e-298 1026.2 518 100.0
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 3.4e-111 406.4 464 50.9
Pp3c11_910 Physcomitrium patens HOM05D007414 ORTHO05D009482 1.4e-104 384.4 409 54.8
SEGI_40936 Sequoiadendron giganteum HOM05D007414 ORTHO05D009482 3.1e-72 276.9 416 41.8
ATR0745G014 Amborella trichopoda HOM05D007414 ORTHO05D009482 3.3e-66 256.9 410 40.2
Aqoxy1G00360 Aquilegia oxysepala HOM05D007414 ORTHO05D009482 4.3e-66 256.5 435 38.4
Nn7g36686 Nelumbo nucifera HOM05D007414 ORTHO05D009482 4.3e-66 256.5 417 37.6
COL.COLO4_20658 Corchorus olitorius HOM05D007414 ORTHO05D009482 1.6e-65 254.6 416 38.0
MSTRG.20514 Avicennia marina HOM05D007414 ORTHO05D009482 3.6e-65 253.4 435 37.7
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 8.1e-65 252.3 451 38.6
TAR623G0974 Trochodendron aralioides HOM05D007414 ORTHO05D009482 1.8e-64 251.1 417 37.6
GSVIVG01013487001 Vitis vinifera HOM05D007414 ORTHO05D009482 2.4e-64 250.8 419 37.9
Lj3g0021878 Lotus japonicus HOM05D007414 ORTHO05D009482 4.0e-64 250.0 411 37.7
QL04p017831 Quercus lobata HOM05D007414 ORTHO05D009482 9.0e-64 248.8 407 36.9
Ciclev10028543m.g Citrus clementina HOM05D007414 ORTHO05D009482 1.5e-63 248.1 446 36.8
Duzib114G0511 Durio zibethinus HOM05D007414 ORTHO05D009482 2.0e-63 247.7 411 37.2
CSS0022385 Camellia sinensis var. sinensis HOM05D007414 ORTHO05D009482 2.6e-63 247.3 408 39.7
Thecc.10G154500 Theobroma cacao HOM05D007414 ORTHO05D009482 3.4e-63 246.9 411 37.7
Medtr3g014680 Medicago truncatula HOM05D007414 ORTHO05D009482 7.6e-63 245.7 435 37.0
Atru.chr12.1333 Acer truncatum HOM05D007414 ORTHO05D009482 1.3e-62 245.0 415 38.3
Actinidia02265 Actinidia chinensis HOM05D007414 ORTHO05D009482 1.3e-62 245.0 438 37.7
Hma1.2p1_1202F.1_g266840 Hydrangea macrophylla HOM05D007414 ORTHO05D009482 1.3e-62 245.0 415 37.3
Cc02_g30210 Coffea canephora HOM05D007414 ORTHO05D009482 1.7e-62 244.6 460 37.0
HanXRQChr16g0525321 Helianthus annuus HOM05D007414 ORTHO05D009482 1.7e-62 244.6 451 35.3
CsaV3_5G024500 Cucumis sativus L. HOM05D007414 ORTHO05D009482 2.9e-62 243.8 408 37.5
CiPaw.13G013700 Carya illinoinensis HOM05D007414 ORTHO05D009482 4.9e-62 243.0 411 37.0
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 6.4e-62 242.7 437 36.4
vmacro12698 Vaccinium macrocarpon HOM05D007414 ORTHO05D009482 1.1e-61 241.9 422 37.9
Gorai.010G216100 Gossypium raimondii HOM05D007414 ORTHO05D009482 1.4e-61 241.5 412 37.6
Potri.001G027600 Populus trichocarpa HOM05D007414 ORTHO05D009482 1.9e-61 241.1 427 37.9
PGR031G2549 Punica granatum HOM05D007414 ORTHO05D009482 1.9e-61 241.1 408 37.5
TWI15G0498 Tripterygium wilfordii HOM05D007414 ORTHO05D009482 1.9e-61 241.1 455 36.3
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 4.2e-61 240.0 447 36.5
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 4.2e-61 240.0 414 37.2
Eucgr.G03234 Eucalyptus grandis HOM05D007414 ORTHO05D009482 5.4e-61 239.6 411 37.0
Lalb_Chr25g0282101 Lupinus albus HOM05D007414 ORTHO05D009482 1.2e-60 238.4 412 38.3
CANSAT56G3550 Cannabis sativa HOM05D007414 ORTHO05D009482 1.6e-60 238.0 411 38.0
Lsat_1_v5_gn_4_29901 Lactuca sativa HOM05D007414 ORTHO05D009482 1.6e-60 238.0 429 37.1
Nitab4.5_0000307g0260 Nicotiana tabacum HOM05D007414 ORTHO05D009482 1.6e-60 238.0 414 37.2
Nitab4.5_0004955g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 2.7e-60 237.3 414 37.0
FAN03G2686 Fragaria x ananassa HOM05D007414 ORTHO05D009482 3.5e-60 236.9 424 36.8
Phvul.005G026400 Phaseolus vulgaris HOM05D007414 ORTHO05D009482 3.5e-60 236.9 412 37.9
arahy.Tifrunner.gnm1.ann1.GMDI7B Arachis hypogaea HOM05D007414 ORTHO05D009482 7.8e-60 235.7 439 37.6
DCAR_031835 Daucus carota HOM05D007414 ORTHO05D009482 1.0e-59 235.3 442 35.7
Glyma.11G155300 Glycine max HOM05D007414 ORTHO05D009482 1.0e-59 235.3 412 38.1
RcHm_v2.0_Chr1g0324301 Rosa chinensis HOM05D007414 ORTHO05D009482 1.0e-59 235.3 413 36.8
Solyc01g096400.4 Solanum lycopersicum HOM05D007414 ORTHO05D009482 1.0e-59 235.3 414 36.0
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 1.3e-59 235.0 424 36.6
FAN06G2659 Fragaria x ananassa HOM05D007414 ORTHO05D009482 1.3e-59 235.0 424 36.6
Sopen01g040130 Solanum pennellii HOM05D007414 ORTHO05D009482 1.3e-59 235.0 414 36.0
VMungo1080G1369 Vigna mungo HOM05D007414 ORTHO05D009482 1.3e-59 235.0 412 36.9
ECA234G1800 Erigeron canadensis HOM05D007414 ORTHO05D009482 1.7e-59 234.6 408 36.8
FAN10G2712 Fragaria x ananassa HOM05D007414 ORTHO05D009482 3.0e-59 233.8 424 36.3
Gohir.D10G192600 Gossypium hirsutum HOM05D007414 ORTHO05D009482 3.0e-59 233.8 424 37.3
Gorai.011G215300 Gossypium raimondii HOM05D007414 ORTHO05D009482 3.0e-59 233.8 424 37.3
Glyma.04G137000 Glycine max HOM05D007414 ORTHO05D009482 3.9e-59 233.4 412 37.9
ClCG01G007530 Citrullus lanatus HOM05D007414 ORTHO05D009482 6.6e-59 232.6 410 36.1
arahy.Tifrunner.gnm1.ann1.XZAR1L Arachis hypogaea HOM05D007414 ORTHO05D009482 1.1e-58 231.9 430 37.7
MD02G1287000 Malus domestica HOM05D007414 ORTHO05D009482 2.5e-58 230.7 411 35.5
Sabra01G0020000 Salix brachista HOM05D007414 ORTHO05D009482 3.3e-58 230.3 440 36.6
Gohir.A06G174800 Gossypium hirsutum HOM05D007414 ORTHO05D009482 5.6e-58 229.6 350 40.0
Gohir.D06G184800 Gossypium hirsutum HOM05D007414 ORTHO05D009482 7.3e-58 229.2 350 40.0
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 1.6e-57 228.0 388 38.9
MELO3C005149.2 Cucumis melo HOM05D007414 ORTHO05D009482 1.6e-57 228.0 440 34.8
Dinv22037 Davidia involucrata HOM05D007414 ORTHO05D009482 1.6e-57 228.0 393 36.4
CAN.G1045.37 Capsicum annuum HOM05D007414 ORTHO05D009482 6.2e-57 226.1 414 36.2
Gohir.A10G185400 Gossypium hirsutum HOM05D007414 ORTHO05D009482 6.2e-57 226.1 411 37.0
Sed0006433 Sechium edule HOM05D007414 ORTHO05D009482 6.2e-57 226.1 388 36.9
EL10Ac2g02800 Beta vulgaris HOM05D007414 ORTHO05D009482 1.1e-56 225.3 468 34.8
PSO384G0147 Papaver somniferum HOM05D007414 ORTHO05D009482 1.4e-56 224.9 467 34.7
PSO339G0457 Papaver somniferum HOM05D007414 ORTHO05D009482 1.5e-55 221.5 429 35.2
Manes.15G192920 Manihot esculenta HOM05D007414 ORTHO05D009482 2.2e-54 217.6 393 37.7
THA.LOC104826727 Tarenaya hassleriana HOM05D007414 ORTHO05D009482 3.8e-54 216.9 430 35.8
Rhsim01G0124300 Rhododendron simsii HOM05D007414 ORTHO05D009482 1.9e-53 214.5 405 37.3
Hund13359 Selenicereus undatus HOM05D007414 ORTHO05D009482 1.2e-52 211.8 423 36.6
Peaxi162Scf00767g00524 Petunia axillaris HOM05D007414 ORTHO05D009482 1.6e-52 211.5 365 36.2
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 1.5e-50 204.9 345 38.0
Nn7g36678 Nelumbo nucifera HOM05D007414 ORTHO05D009482 5.8e-47 193.0 394 32.5
Potri.003G196200 Populus trichocarpa HOM05D007414 ORTHO05D009482 1.3e-46 191.8 430 31.9
Haze_03038 Corylus avellana HOM05D007414 ORTHO05D009482 1.5e-39 168.3 330 34.5
Psat5g222240 Pisum sativum HOM05D007414 ORTHO05D009482 4.5e-39 166.8 325 34.8
Dinv32026 Davidia involucrata HOM05D007414 ORTHO05D009482 3.5e-36 157.1 255 36.1
Prupe.2G036300 Prunus persica HOM05D007414 ORTHO05D009482 1.3e-35 155.2 268 36.9
Migut.O00949 Erythranthe guttata HOM05D007414 ORTHO05D009482 1.8e-32 144.8 305 33.4
MBI19_g25612_MAGBIO Magnolia biondii HOM05D007414 ORTHO05D009482 9.0e-32 142.5 198 40.4
Zm00001eb128490 Zea mays HOM05D007414 ORTHO05D009482 4.2e-29 133.7 172 44.8
Os01g0272800 Oryza sativa ssp. japonica HOM05D007414 ORTHO05D009482 6.7e-27 126.3 204 39.7
DCAR_000332 Daucus carota HOM05D007414 ORTHO05D009482 1.2e-20 105.5 184 37.0
PRCOL_00005884 Prasinoderma coloniale HOM05D007414 ORTHO05D009482 3.3e-18 97.4 395 28.9
TPR.G1409 Trifolium pratense HOM05D007414 ORTHO05D009482 4.8e-17 93.6 130 39.2
MCO02G191 Micromonas commoda HOM05D007414 ORTHO05D009482 8.2e-17 92.8 341 27.6
Migut.B01233 Erythranthe guttata HOM05D007414 ORTHO05D009482 1.4e-16 92.0 117 42.7
Nitab4.5_0008639g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 1.3e-14 85.5 122 40.2
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 4.2e-13 80.5 425 26.1
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 1.1e-10 72.4 333 25.2
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 9.7e-10 69.3 456 24.1
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 9.7e-10 69.3 423 25.5
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.7e-09 68.6 469 24.1
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 2.2e-09 68.2 480 24.0
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 6.3e-09 66.6 449 23.4
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 1.1e-08 65.9 420 25.2
Pp3c12_14620 Physcomitrium patens HOM05D006098 ORTHO05D007470 1.1e-08 65.9 347 26.8
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 1.4e-08 65.5 417 24.0
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 1.4e-08 65.5 417 24.0
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 1.8e-08 65.1 427 24.6
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 1.8e-08 65.1 410 25.1
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 2.4e-08 64.7 414 23.9
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 4.1e-08 63.9 429 24.0
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 5.3e-08 63.5 427 23.9
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 5.3e-08 63.5 395 25.1
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 7.0e-08 63.2 416 24.3
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 9.1e-08 62.8 416 23.6
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 9.1e-08 62.8 415 24.1
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 9.1e-08 62.8 421 23.0
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 1.2e-07 62.4 422 24.6
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 1.2e-07 62.4 421 23.3
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 1.6e-07 62.0 421 24.7
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 1.6e-07 62.0 406 24.9
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 1.6e-07 62.0 414 23.9
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 1.6e-07 62.0 428 23.8
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.6e-07 62.0 477 22.0
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 2.0e-07 61.6 414 24.2
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 2.6e-07 61.2 417 24.5
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 2.6e-07 61.2 428 23.4
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 2.6e-07 61.2 425 25.6
SEGI_36011 Sequoiadendron giganteum HOM05D007414 ORTHO05D009482 2.6e-07 61.2 63 50.8
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 2.6e-07 61.2 422 23.7
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 4.5e-07 60.5 418 24.6
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 4.5e-07 60.5 416 23.6
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 5.9e-07 60.1 435 23.9
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 7.7e-07 59.7 410 23.7
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 1.0e-06 59.3 426 24.2
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 1.0e-06 59.3 423 23.9
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.0e-06 59.3 410 23.4
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 1.3e-06 58.9 418 23.4
PSO675G7908 Papaver somniferum HOM05D006098 ORTHO05D007470 1.3e-06 58.9 418 23.4
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 1.3e-06 58.9 419 24.3
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 1.7e-06 58.5 426 22.5
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 1.7e-06 58.5 377 23.9
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 1.7e-06 58.5 418 23.7
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 2.2e-06 58.2 388 24.5
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 2.2e-06 58.2 389 23.4
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 2.2e-06 58.2 426 23.0
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 2.2e-06 58.2 393 24.7
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 2.2e-06 58.2 431 24.1
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 2.9e-06 57.8 416 23.3
AagrBONN_evm.TU.Sc2ySwM_228.5315 Anthoceros agrestis HOM05D020588 ORTHO05D021297 2.9e-06 57.8 152 29.6
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 2.9e-06 57.8 411 24.6
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 3.8e-06 57.4 416 25.2
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 3.8e-06 57.4 410 23.2
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 5.0e-06 57.0 427 25.1
Cre03.g145067 Chlamydomonas reinhardtii HOM05D007414 ORTHO05D009482 5.0e-06 57.0 84 42.9
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 6.5e-06 56.6 432 23.8
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 6.5e-06 56.6 430 23.7
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 6.5e-06 56.6 427 23.9
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 6.5e-06 56.6 410 23.2
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 6.5e-06 56.6 339 23.0
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 8.5e-06 56.2 327 24.8
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 8.5e-06 56.2 327 24.8
Cre03.g145027 Chlamydomonas reinhardtii HOM05D056397 ORTHO05D044103 8.5e-06 56.2 302 26.2
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 8.5e-06 56.2 396 24.2
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 8.5e-06 56.2 418 23.4


User provided reference genes

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