Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0007s0033 Marchantia polymorpha HOM05D003468 ORTHO05D002806 0.0e+00 1483.8 794 100.0
Nitab4.5_0000002g0180 Nicotiana tabacum HOM05D003468 ORTHO05D002806 8.2e-16 90.1 115 42.6
Potri.013G154500 Populus trichocarpa HOM05D003468 ORTHO05D002806 3.1e-15 88.2 114 41.2
CSS0029508 Camellia sinensis var. sinensis HOM05D003468 ORTHO05D002806 4.0e-15 87.8 113 43.4
SalBow2G1693 Salvia bowleyana HOM05D003468 ORTHO05D002806 5.3e-15 87.4 115 40.0
Nn2g10321 Nelumbo nucifera HOM05D003468 ORTHO05D002806 6.9e-15 87.0 162 35.8
Dinv28729 Davidia involucrata HOM05D003468 ORTHO05D002806 9.0e-15 86.7 112 42.0
Aqoxy4G02393 Aquilegia oxysepala HOM05D003468 ORTHO05D002806 1.2e-14 86.3 156 33.3
Eucgr.B00647 Eucalyptus grandis HOM05D003468 ORTHO05D002806 1.2e-14 86.3 116 42.2
QL02p099821 Quercus lobata HOM05D003468 ORTHO05D002806 1.5e-14 85.9 123 37.4
SMO367G1195 Selaginella moellendorffii HOM05D003468 ORTHO05D002806 1.5e-14 85.9 784 23.1
CDE07G0878 Ceratophyllum demersum HOM05D003468 ORTHO05D002806 2.0e-14 85.5 116 41.4
MD11G1054300 Malus domestica HOM05D003468 ORTHO05D002806 2.6e-14 85.1 112 42.0
Nitab4.5_0002620g0010 Nicotiana tabacum HOM05D003468 ORTHO05D002806 4.5e-14 84.3 115 40.9
Lsat_1_v5_gn_9_13861 Lactuca sativa HOM05D003468 ORTHO05D002806 5.8e-14 84.0 113 39.8
Pp3c12_8190 Physcomitrium patens HOM05D003468 ORTHO05D002806 7.6e-14 83.6 55 65.5
SGA_v2.0_scaffold120G32985 Striga asiatica HOM05D003468 ORTHO05D002806 7.6e-14 83.6 202 33.7
MSTRG.17916 Avicennia marina HOM05D003468 ORTHO05D002806 1.7e-13 82.4 136 36.8
QL01p024883 Quercus lobata HOM05D003468 ORTHO05D002806 1.7e-13 82.4 124 38.7
Aqoxy6G01245 Aquilegia oxysepala HOM05D003468 ORTHO05D002806 2.9e-13 81.6 117 37.6
Cc01_g15290 Coffea canephora HOM05D003468 ORTHO05D002806 2.9e-13 81.6 114 39.5
Glyma.06G216400 Glycine max HOM05D003468 ORTHO05D002806 2.9e-13 81.6 110 40.9
Prupe.6G041700 Prunus persica HOM05D003468 ORTHO05D002806 2.9e-13 81.6 171 33.3
Glyma.04G148800 Glycine max HOM05D003468 ORTHO05D002806 3.8e-13 81.3 110 41.8
Pp3s76_20 Physcomitrium patens HOM05D011903 ORTHO05D002806 3.8e-13 81.3 55 67.3
Dinv12277 Davidia involucrata HOM05D003468 ORTHO05D002806 6.5e-13 80.5 118 38.1
Sabra13G0124400 Salix brachista HOM05D003468 ORTHO05D002806 6.5e-13 80.5 147 42.2
vmacro10619 Vaccinium macrocarpon HOM05D003468 ORTHO05D002806 6.5e-13 80.5 113 39.8
CANSAT25G2600 Cannabis sativa HOM05D003468 ORTHO05D002806 8.4e-13 80.1 113 42.5
SGA_v2.0_scaffold77G25360 Striga asiatica HOM05D003468 ORTHO05D002806 8.4e-13 80.1 113 39.8
AagrBONN_evm.TU.Sc2ySwM_344.4617 Anthoceros agrestis HOM05D003468 ORTHO05D002806 1.1e-12 79.7 55 63.6
Lj2A1101T50 Lonicera japonica HOM05D003468 ORTHO05D002806 1.1e-12 79.7 123 39.8
Pp3c19_23130 Physcomitrium patens HOM05D011903 ORTHO05D002806 1.1e-12 79.7 55 65.5
Pp3c2_40 Physcomitrium patens HOM05D011903 ORTHO05D002806 1.1e-12 79.7 55 65.5
Pp3c5_29220 Physcomitrium patens HOM05D011903 ORTHO05D002806 1.1e-12 79.7 55 65.5
Pp3s241_30 Physcomitrium patens HOM05D011903 ORTHO05D002806 1.1e-12 79.7 55 65.5
MELO3C026878.2 Cucumis melo HOM05D003468 ORTHO05D002806 1.9e-12 79.0 113 38.1
Eucgr.B00490 Eucalyptus grandis HOM05D003468 ORTHO05D002806 2.5e-12 78.6 187 33.2
CiPaw.14G050900 Carya illinoinensis HOM05D003468 ORTHO05D002806 4.2e-12 77.8 116 39.7
Ciclev10028601m.g Citrus clementina HOM05D003468 ORTHO05D002806 4.2e-12 77.8 173 32.4
CsaV3_6G013110 Cucumis sativus L. HOM05D003468 ORTHO05D002806 4.2e-12 77.8 118 36.4
GSVIVG01024564001 Vitis vinifera HOM05D003468 ORTHO05D002806 4.2e-12 77.8 112 36.6
PSO675G8835 Papaver somniferum HOM05D003468 ORTHO05D002806 5.5e-12 77.4 116 37.9
MSTRG.12708 Avicennia marina HOM05D003468 ORTHO05D002806 7.1e-12 77.0 112 38.4
ECA247G2629 Erigeron canadensis HOM05D003468 ORTHO05D002806 7.1e-12 77.0 117 40.2
PSO541G3532 Papaver somniferum HOM05D003468 ORTHO05D002806 7.1e-12 77.0 116 37.9
CANSAT54G1733 Cannabis sativa HOM05D003468 ORTHO05D002806 9.3e-12 76.6 111 37.8
HanXRQChr16g0522621 Helianthus annuus HOM05D003468 ORTHO05D002806 9.3e-12 76.6 284 27.8
Psat5g003000 Pisum sativum HOM05D003468 ORTHO05D002806 9.3e-12 76.6 124 37.1
Phvul.009G025400 Phaseolus vulgaris HOM05D003468 ORTHO05D002806 1.2e-11 76.3 260 25.4
SalBow4G1032 Salvia bowleyana HOM05D003468 ORTHO05D002806 1.2e-11 76.3 53 62.3
MD03G1052200 Malus domestica HOM05D003468 ORTHO05D002806 2.1e-11 75.5 114 37.7
Peaxi162Scf01078g00514 Petunia axillaris HOM05D003468 ORTHO05D002806 2.1e-11 75.5 113 38.1
Manes.10G065600 Manihot esculenta HOM05D003468 ORTHO05D002806 4.6e-11 74.3 116 35.3
Haze_24464 Corylus avellana HOM05D003468 ORTHO05D002806 7.9e-11 73.6 230 28.7
FAN16G1667 Fragaria x ananassa HOM05D003468 ORTHO05D002806 7.9e-11 73.6 112 36.6
Glyma.08G047600 Glycine max HOM05D003468 ORTHO05D002806 7.9e-11 73.6 113 35.4
DCAR_017858 Daucus carota HOM05D003468 ORTHO05D002806 1.0e-10 73.2 114 37.7
Zm00001eb271970 Zea mays HOM05D024462 ORTHO05D002806 1.3e-10 72.8 108 39.8
Actinidia34492 Actinidia chinensis HOM05D003468 ORTHO05D002806 1.8e-10 72.4 113 37.2
FAN08G2580 Fragaria x ananassa HOM05D003468 ORTHO05D002806 1.8e-10 72.4 116 34.5
FAN21G2193 Fragaria x ananassa HOM05D003468 ORTHO05D002806 1.8e-10 72.4 157 31.8
Rhsim01G0242800 Rhododendron simsii HOM05D003468 ORTHO05D002806 1.8e-10 72.4 163 30.1
Sed0021873 Sechium edule HOM05D003468 ORTHO05D002806 1.8e-10 72.4 158 31.6
CiPaw.13G064100 Carya illinoinensis HOM05D003468 ORTHO05D002806 2.3e-10 72.0 108 38.9
Hund21917 Selenicereus undatus HOM05D003468 ORTHO05D002806 2.3e-10 72.0 109 33.0
Oeu064681.2 Olea europaea HOM05D003468 ORTHO05D002806 3.0e-10 71.6 115 37.4
HPP92_005948 Vanilla planifolia HOM05D003468 ORTHO05D002806 3.0e-10 71.6 142 33.8
FvH4_5g00450 Fragaria vesca HOM05D003468 ORTHO05D002806 3.9e-10 71.2 150 31.3
Pp3c20_23720 Physcomitrium patens HOM05D011903 ORTHO05D002806 3.9e-10 71.2 54 57.4
RcHm_v2.0_Chr5g0073101 Rosa chinensis HOM05D003468 ORTHO05D002806 5.1e-10 70.9 152 32.2
HPP92_009505 Vanilla planifolia HOM05D003468 ORTHO05D002806 5.1e-10 70.9 112 40.2
FAN04G1909 Fragaria x ananassa HOM05D003468 ORTHO05D002806 6.7e-10 70.5 111 35.1
Lj1A121T44 Lonicera japonica HOM05D003468 ORTHO05D002806 6.7e-10 70.5 184 42.4
Solyc06g082510.3 Solanum lycopersicum HOM05D003468 ORTHO05D002806 6.7e-10 70.5 117 35.0
FAN13G0004 Fragaria x ananassa HOM05D003468 ORTHO05D002806 8.7e-10 70.1 116 32.8
FAN18G3325 Fragaria x ananassa HOM05D003468 ORTHO05D002806 8.7e-10 70.1 116 32.8
Hma1.2p1_0170F.1_g075010 Hydrangea macrophylla HOM05D003468 ORTHO05D002806 8.7e-10 70.1 183 31.7
PGR129G0007 Punica granatum HOM05D003468 ORTHO05D002806 8.7e-10 70.1 138 33.3
FvH4_3g40451 Fragaria vesca HOM05D003468 ORTHO05D002806 1.5e-09 69.3 188 30.3
FAN08G2609 Fragaria x ananassa HOM05D003468 ORTHO05D002806 1.5e-09 69.3 53 56.6
Cfa021527 Carpinus fangiana HOM05D003468 ORTHO05D002806 2.5e-09 68.6 51 56.9
Glyma.18G052700 Glycine max HOM05D003468 ORTHO05D002806 2.5e-09 68.6 111 34.2
Sc16g0010520 Simmondsia chinensis HOM05D003468 ORTHO05D002806 3.3e-09 68.2 116 37.9
PGSC0003DMG400030385 Solanum tuberosum HOM05D003468 ORTHO05D002806 4.3e-09 67.8 115 34.8
VMungo1309G2250 Vigna mungo HOM05D003468 ORTHO05D002806 4.3e-09 67.8 53 56.6
CAN.G874.78 Capsicum annuum HOM05D003468 ORTHO05D002806 5.7e-09 67.4 113 36.3
ClCG02G019040 Citrullus lanatus HOM05D003468 ORTHO05D002806 5.7e-09 67.4 117 35.9
DCAR_024874 Daucus carota HOM05D003468 ORTHO05D002806 5.7e-09 67.4 111 36.0
arahy.Tifrunner.gnm1.ann1.HB1RT4 Arachis hypogaea HOM05D003468 ORTHO05D002806 9.7e-09 66.6 52 57.7
arahy.Tifrunner.gnm1.ann1.R24AWJ Arachis hypogaea HOM05D003468 ORTHO05D002806 9.7e-09 66.6 52 55.8
arahy.Tifrunner.gnm1.ann1.UJZR4Z Arachis hypogaea HOM05D003468 ORTHO05D002806 9.7e-09 66.6 116 35.3
DCAR_005491 Daucus carota HOM05D003468 ORTHO05D002806 9.7e-09 66.6 105 36.2
DCAR_026483 Daucus carota HOM05D003468 ORTHO05D002806 9.7e-09 66.6 51 58.8
Peaxi162Scf00362g01055 Petunia axillaris HOM05D003468 ORTHO05D002806 1.3e-08 66.2 129 35.7
RcHm_v2.0_Chr5g0000441 Rosa chinensis HOM05D003468 ORTHO05D002806 1.6e-08 65.9 152 30.3
Lalb_Chr15g0085871 Lupinus albus HOM05D003468 ORTHO05D002806 2.2e-08 65.5 110 34.5
Nn3g19626 Nelumbo nucifera HOM05D003468 ORTHO05D002806 2.2e-08 65.5 155 31.0
EL10Ac4g10009 Beta vulgaris HOM05D003468 ORTHO05D002806 2.8e-08 65.1 113 33.6
MCO04G433 Micromonas commoda HOM05D003468 ORTHO05D002806 2.8e-08 65.1 49 59.2
Medtr3g117790 Medicago truncatula HOM05D003468 ORTHO05D002806 3.7e-08 64.7 154 31.2
arahy.Tifrunner.gnm1.ann1.DRQC3V Arachis hypogaea HOM05D003468 ORTHO05D002806 4.8e-08 64.3 119 32.8
Lalb_Chr18g0054251 Lupinus albus HOM05D003468 ORTHO05D002806 4.8e-08 64.3 112 34.8
Phvul.006G078200 Phaseolus vulgaris HOM05D003468 ORTHO05D002806 4.8e-08 64.3 111 32.4
Glyma.11G186600 Glycine max HOM05D003468 ORTHO05D002806 6.3e-08 63.9 111 34.2
Sopen06g033890 Solanum pennellii HOM05D003468 ORTHO05D002806 6.3e-08 63.9 157 31.2
Lj1g0000690 Lotus japonicus HOM05D003468 ORTHO05D002806 1.1e-07 63.2 51 56.9
Os07g0695900 Oryza sativa ssp. japonica HOM05D003468 ORTHO05D002806 1.1e-07 63.2 116 33.6
Psat5g148920 Pisum sativum HOM05D003468 ORTHO05D002806 1.1e-07 63.2 111 34.2
Zm00001eb374860 Zea mays HOM05D024462 ORTHO05D002806 1.1e-07 63.2 115 35.7
HanXRQChr16g0497711 Helianthus annuus HOM05D006374 ORTHO05D006349 1.4e-07 62.8 53 54.7
VMungo0540G0681 Vigna mungo HOM05D003468 ORTHO05D002806 1.4e-07 62.8 120 30.0
Oeu058241.1 Olea europaea HOM05D003468 ORTHO05D002806 1.8e-07 62.4 114 34.2
Pp3c3_11280 Physcomitrium patens HOM05D003468 ORTHO05D002806 1.8e-07 62.4 49 59.2
Sc09g0001380 Simmondsia chinensis HOM05D003468 ORTHO05D002806 1.8e-07 62.4 51 52.9
TWI79G0734 Tripterygium wilfordii HOM05D003468 ORTHO05D002806 2.4e-07 62.0 117 34.2
AUR62000285 Chenopodium quinoa HOM05D003468 ORTHO05D002806 3.1e-07 61.6 121 34.7
Gohir.D10G008000 Gossypium hirsutum HOM05D003468 ORTHO05D002806 3.1e-07 61.6 127 33.1
Sed0014984 Sechium edule HOM05D003468 ORTHO05D002806 3.1e-07 61.6 180 29.4
FAN11G0916 Fragaria x ananassa HOM05D003468 ORTHO05D002806 4.1e-07 61.2 198 28.8
Ah.04g159140 Amaranthus hybridus HOM05D003468 ORTHO05D002806 5.3e-07 60.8 118 32.2
TAR633G1116 Trochodendron aralioides HOM05D003468 ORTHO05D002806 6.9e-07 60.5 156 29.5
Medtr3g116690 Medicago truncatula HOM05D003468 ORTHO05D002806 9.0e-07 60.1 152 30.3
HPP92_019205 Vanilla planifolia HOM05D003468 ORTHO05D002806 9.0e-07 60.1 111 32.4
arahy.Tifrunner.gnm1.ann1.596HBI Arachis hypogaea HOM05D003468 ORTHO05D002806 1.2e-06 59.7 53 52.8
arahy.Tifrunner.gnm1.ann1.NCBN9K Arachis hypogaea HOM05D003468 ORTHO05D002806 1.2e-06 59.7 54 51.9
Lj6g0007992 Lotus japonicus HOM05D003468 ORTHO05D002806 1.2e-06 59.7 55 45.5
Medtr3g467090 Medicago truncatula HOM05D003468 ORTHO05D002806 1.2e-06 59.7 53 50.9
MSTRG.23666 Avicennia marina HOM05D001027 ORTHO05D000844 1.5e-06 59.3 51 52.9
MSTRG.9507 Avicennia marina HOM05D001027 ORTHO05D000844 2.6e-06 58.5 61 45.9
Nitab4.5_0000036g0090 Nicotiana tabacum HOM05D001027 ORTHO05D000844 2.6e-06 58.5 51 54.9
AT5G58340 Arabidopsis thaliana HOM05D009360 ORTHO05D002806 3.4e-06 58.2 47 61.7
Ca_15309_v3 Cicer arietinum L. HOM05D003468 ORTHO05D002806 3.4e-06 58.2 53 52.8
MD02G1186900 Malus domestica HOM05D001027 ORTHO05D000844 3.4e-06 58.2 51 49.0
Pp3c26_15770 Physcomitrium patens HOM05D011903 ORTHO05D002806 3.4e-06 58.2 42 61.9
BcaNung05862 Brassica carinata HOM05D001027 ORTHO05D000844 4.5e-06 57.8 51 51.0
BcaNung05864 Brassica carinata HOM05D001027 ORTHO05D000844 4.5e-06 57.8 51 51.0
A06p32840 Brassica napus HOM05D001027 ORTHO05D000844 4.5e-06 57.8 51 51.0
C03p59630 Brassica napus HOM05D001027 ORTHO05D000844 4.5e-06 57.8 51 51.0
BolC3t18225H Brassica oleracea HOM05D001027 ORTHO05D000844 4.5e-06 57.8 51 51.0
BraA06t26216Z Brassica rapa HOM05D001027 ORTHO05D000844 4.5e-06 57.8 51 51.0
AUR62006633 Chenopodium quinoa HOM05D003468 ORTHO05D002806 4.5e-06 57.8 116 31.9
Thhalv10010562m.g Eutrema salsugineum HOM05D001027 ORTHO05D000844 4.5e-06 57.8 51 51.0
SalBow3G3075 Salvia bowleyana HOM05D001027 ORTHO05D000844 4.5e-06 57.8 51 52.9
Migut.M01993 Erythranthe guttata HOM05D003468 ORTHO05D002806 5.9e-06 57.4 146 27.4
Lj6g0018146 Lotus japonicus HOM05D003468 ORTHO05D002806 5.9e-06 57.4 111 30.6
Medtr2g099610 Medicago truncatula HOM05D001027 ORTHO05D000844 5.9e-06 57.4 56 51.8
BcaB08g36171 Brassica carinata HOM05D009360 ORTHO05D002806 7.7e-06 57.0 49 59.2
BcaC04g19876 Brassica carinata HOM05D009360 ORTHO05D002806 7.7e-06 57.0 49 59.2
BolC9t57878H Brassica oleracea HOM05D009360 ORTHO05D002806 7.7e-06 57.0 49 59.2
Nitab4.5_0010836g0030 Nicotiana tabacum HOM05D001027 ORTHO05D000844 7.7e-06 57.0 51 52.9
Oeu055350.2 Olea europaea HOM05D001027 ORTHO05D000844 7.7e-06 57.0 64 45.3
Peaxi162Scf00449g00319 Petunia axillaris HOM05D001027 ORTHO05D000844 7.7e-06 57.0 51 52.9
Pp3c19_340 Physcomitrium patens HOM05D011903 ORTHO05D002806 7.7e-06 57.0 41 61.0
Sp6g20000 Schrenkiella parvula HOM05D009360 ORTHO05D002806 7.7e-06 57.0 49 59.2
Solyc02g064630.4 Solanum lycopersicum HOM05D001027 ORTHO05D000844 7.7e-06 57.0 51 52.9
Sopen02g014730 Solanum pennellii HOM05D001027 ORTHO05D000844 7.7e-06 57.0 51 52.9
PGSC0003DMG402003328 Solanum tuberosum HOM05D001027 ORTHO05D000844 7.7e-06 57.0 51 52.9
AT3G49850 Arabidopsis thaliana HOM05D001027 ORTHO05D000844 1.0e-05 56.6 50 50.0
BcaNung05860 Brassica carinata HOM05D001027 ORTHO05D000844 1.0e-05 56.6 51 49.0
C07p45540 Brassica napus HOM05D001027 ORTHO05D000844 1.0e-05 56.6 53 52.8
BolC7t45075H Brassica oleracea HOM05D001027 ORTHO05D000844 1.0e-05 56.6 53 52.8
Carub.0008s1888 Capsella rubella HOM05D009360 ORTHO05D002806 1.0e-05 56.6 47 59.6
CARHR280010 Cardamine hirsuta HOM05D001027 ORTHO05D000844 1.0e-05 56.6 51 49.0
Ca_24682_v3 Cicer arietinum L. HOM05D001027 ORTHO05D000844 1.0e-05 56.6 51 49.0
ECA232G2258 Erigeron canadensis HOM05D001027 ORTHO05D000844 1.0e-05 56.6 53 54.7
Thhalv10011866m.g Eutrema salsugineum HOM05D001027 ORTHO05D000844 1.0e-05 56.6 62 41.9
Psat5g289920 Pisum sativum HOM05D001027 ORTHO05D000844 1.0e-05 56.6 61 45.9


User provided reference genes

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