Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 0.0e+00 1585.5 830 100.0
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 5.0e-125 453.0 827 34.0
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 1.4e-119 434.9 811 33.7
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 1.8e-119 434.5 826 33.3
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 7.7e-118 429.1 817 33.5
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 1.7e-117 427.9 825 33.3
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 6.6e-117 426.0 828 33.7
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 4.7e-115 419.9 808 33.2
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 4.7e-115 419.9 832 32.9
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 2.3e-114 417.5 811 31.7
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 3.0e-114 417.2 831 31.5
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 6.3e-112 409.5 803 33.9
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 1.2e-110 405.2 823 32.2
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 3.5e-110 403.7 817 33.2
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 5.9e-110 402.9 819 30.9
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 1.0e-109 402.1 670 36.4
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 1.3e-109 401.7 815 32.3
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 3.9e-109 400.2 857 31.4
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 3.9e-109 400.2 653 36.4
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 5.0e-109 399.8 808 31.9
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 1.1e-108 398.7 816 32.4
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 1.9e-108 397.9 810 31.5
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 2.5e-108 397.5 811 31.9
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 3.3e-108 397.1 812 31.9
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 1.2e-107 395.2 814 31.7
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 1.2e-107 395.2 818 31.7
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 2.1e-107 394.4 811 31.9
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 2.1e-107 394.4 817 31.6
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 6.2e-107 392.9 833 31.2
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 8.0e-107 392.5 811 31.3
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 1.4e-106 391.7 684 34.9
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 1.8e-106 391.3 833 31.7
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 1.8e-106 391.3 821 31.9
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 2.3e-106 391.0 833 31.3
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.3e-106 391.0 817 31.0
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 4.0e-106 390.2 664 35.1
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 5.2e-106 389.8 812 30.0
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 6.8e-106 389.4 821 31.2
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 2.0e-105 387.9 830 31.1
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 2.0e-105 387.9 815 30.9
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 2.6e-105 387.5 684 33.0
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 3.4e-105 387.1 813 31.1
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 5.8e-105 386.3 805 30.9
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 5.8e-105 386.3 821 31.3
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 5.8e-105 386.3 814 30.7
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 9.8e-105 385.6 811 30.9
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 2.9e-104 384.0 812 30.2
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 2.9e-104 384.0 680 33.2
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 6.4e-104 382.9 819 30.9
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 1.1e-103 382.1 834 30.5
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 1.4e-103 381.7 811 31.1
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 1.9e-103 381.3 815 30.3
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 1.9e-103 381.3 818 30.3
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 2.4e-103 380.9 813 30.6
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 7.0e-103 379.4 814 30.8
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 7.0e-103 379.4 834 29.6
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 9.2e-103 379.0 811 30.9
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 9.2e-103 379.0 811 31.4
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 1.6e-102 378.3 828 30.8
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 2.7e-102 377.5 812 31.2
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 2.7e-102 377.5 814 31.7
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 4.6e-102 376.7 808 31.3
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.7e-101 374.8 818 30.1
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 3.9e-101 373.6 820 30.2
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 3.9e-101 373.6 544 38.2
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 8.6e-101 372.5 817 30.0
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 1.5e-100 371.7 816 29.8
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 1.9e-100 371.3 684 33.2
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 2.5e-100 370.9 830 30.8
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.8e-99 367.5 829 29.3
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 4.7e-99 366.7 815 29.7
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 6.2e-99 366.3 556 36.9
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 8.1e-99 365.9 549 38.1
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 8.1e-99 365.9 797 30.0
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 8.9e-98 362.5 832 30.2
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 1.2e-97 362.1 830 30.1
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 2.0e-97 361.3 549 36.2
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 3.4e-97 360.5 821 30.2
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 3.4e-97 360.5 798 30.2
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 4.4e-97 360.1 823 29.9
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 4.4e-97 360.1 545 36.3
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 1.3e-96 358.6 817 29.6
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 1.3e-96 358.6 854 29.2
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 8.3e-96 355.9 550 36.9
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.9e-95 354.8 546 36.4
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 1.9e-95 354.8 544 37.5
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 2.4e-95 354.4 809 30.3
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 9.2e-95 352.4 534 36.7
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 1.6e-94 351.7 814 29.1
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 5.1e-93 346.7 837 28.8
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 5.1e-93 346.7 646 32.5
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 8.6e-93 345.9 525 38.5
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 1.5e-92 345.1 809 31.0
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 5.6e-92 343.2 774 29.7
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 7.3e-92 342.8 814 30.3
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.2e-91 342.0 468 40.4
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 6.2e-91 339.7 812 29.8
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 4.0e-90 337.0 648 34.4
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 5.2e-90 336.7 805 29.6
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 6.8e-90 336.3 675 34.2
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 2.9e-88 330.9 801 28.1
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 4.9e-88 330.1 771 30.1
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 7.8e-86 322.8 767 29.3
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 3.3e-84 317.4 496 36.7
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 6.2e-83 313.2 783 29.1
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 4.0e-82 310.5 816 29.5
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 4.9e-80 303.5 794 28.7
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 2.4e-79 301.2 725 29.7
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 5.4e-79 300.1 532 35.0
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.8e-74 285.0 811 27.9
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 2.2e-72 278.1 625 28.2
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 1.1e-66 259.2 384 36.7
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 8.4e-64 249.6 765 26.3
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 6.0e-62 243.4 339 37.8
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 1.3e-61 242.3 803 24.9
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 4.3e-60 237.3 290 44.5
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 2.6e-57 228.0 378 36.8
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 6.5e-56 223.4 290 40.7
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 3.2e-55 221.1 321 39.3
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 3.2e-55 221.1 553 27.7
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 1.3e-53 215.7 287 40.4
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 2.0e-41 175.3 220 41.4
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 1.7e-40 172.2 267 37.5
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 2.8e-35 154.8 200 42.0
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 2.9e-32 144.8 176 40.3
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 1.8e-26 125.6 555 21.8
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 1.2e-22 112.8 528 24.2
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 3.0e-21 108.2 319 30.7
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 4.8e-19 100.9 548 21.9
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 1.8e-18 99.0 138 42.8
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 3.1e-18 98.2 195 29.2
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 5.3e-18 97.4 111 46.8
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 9.4e-15 86.7 408 22.8
MCO12G150 Micromonas commoda HOM05D004734 ORTHO05D006019 1.6e-14 85.9 330 24.2
PRCOL_00004220 Prasinoderma coloniale HOM05D004734 ORTHO05D006019 9.8e-12 76.6 464 23.3
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 2.8e-11 75.1 116 38.8
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 2.0e-09 68.9 85 40.0
CBR_g3446 Chara braunii HOM05D004734 ORTHO05D006019 5.9e-09 67.4 126 34.1
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 1.0e-08 66.6 99 36.4
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.8e-08 64.7 226 25.2
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 5.5e-07 60.8 83 37.3
Cfa026774 Carpinus fangiana HOM05D004734 ORTHO05D126311 6.1e-06 57.4 330 21.8


User provided reference genes

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