Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.4e-73 279.6 149 100.0
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 4.6e-37 158.3 122 68.0
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 6.0e-37 157.9 147 63.9
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.0e-36 157.1 147 63.3
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 6.6e-36 154.5 141 63.8
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.5e-35 153.3 115 68.7
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 3.3e-35 152.1 147 59.9
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 7.3e-35 151.0 147 60.5
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.6e-34 149.8 147 61.2
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.6e-34 149.8 147 61.2
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 1.6e-34 149.8 117 68.4
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 1.6e-34 149.8 117 68.4
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 1.6e-34 149.8 101 73.3
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 4.7e-34 148.3 145 60.0
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 6.2e-34 147.9 101 71.3
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 8.1e-34 147.5 147 59.9
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 1.1e-33 147.1 147 57.8
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.1e-33 147.1 149 56.4
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.1e-33 147.1 116 66.4
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 1.1e-33 147.1 116 66.4
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 1.4e-33 146.7 152 62.5
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.4e-33 146.7 147 59.9
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.4e-33 146.7 147 58.5
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.4e-33 146.7 153 59.5
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.4e-33 146.7 119 66.4
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 2.4e-33 146.0 124 63.7
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 2.4e-33 146.0 147 59.2
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.4e-33 146.0 117 65.0
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 2.4e-33 146.0 139 62.6
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.4e-33 146.0 117 65.8
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 2.4e-33 146.0 147 59.2
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 3.1e-33 145.6 161 57.8
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.1e-33 145.6 147 58.5
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 4.0e-33 145.2 126 64.3
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 4.0e-33 145.2 126 64.3
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 4.0e-33 145.2 147 58.5
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 4.0e-33 145.2 147 57.8
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 5.2e-33 144.8 147 55.8
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 5.2e-33 144.8 147 61.2
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 6.8e-33 144.4 147 59.2
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 8.9e-33 144.1 147 57.1
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 8.9e-33 144.1 147 57.8
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 8.9e-33 144.1 125 63.2
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 8.9e-33 144.1 126 62.7
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 8.9e-33 144.1 117 65.8
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 1.2e-32 143.7 147 59.9
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.2e-32 143.7 147 57.8
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 1.2e-32 143.7 147 57.8
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 1.2e-32 143.7 147 57.1
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.5e-32 143.3 147 57.8
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.5e-32 143.3 118 65.3
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 2.0e-32 142.9 140 60.7
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.0e-32 142.9 117 64.1
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 2.0e-32 142.9 98 72.4
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 2.0e-32 142.9 147 57.8
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 2.6e-32 142.5 147 58.5
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 2.6e-32 142.5 126 63.5
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.6e-32 142.5 117 66.7
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.4e-32 142.1 147 57.1
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 3.4e-32 142.1 139 59.7
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 3.4e-32 142.1 147 56.5
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 4.4e-32 141.7 147 59.2
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 4.4e-32 141.7 147 57.8
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 4.4e-32 141.7 147 57.8
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 4.4e-32 141.7 148 58.8
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 4.4e-32 141.7 147 58.5
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 4.4e-32 141.7 99 72.7
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 5.8e-32 141.4 138 60.1
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 5.8e-32 141.4 140 57.9
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 5.8e-32 141.4 140 57.9
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 5.8e-32 141.4 147 57.8
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 7.6e-32 141.0 146 59.6
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 7.6e-32 141.0 118 65.3
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 9.9e-32 140.6 154 55.8
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 9.9e-32 140.6 147 59.2
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 9.9e-32 140.6 147 57.1
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 9.9e-32 140.6 147 57.1
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 9.9e-32 140.6 147 57.1
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 1.3e-31 140.2 148 57.4
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 1.3e-31 140.2 147 56.5
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.3e-31 140.2 147 57.1
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 1.3e-31 140.2 111 66.7
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.3e-31 140.2 147 56.5
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.7e-31 139.8 115 63.5
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.7e-31 139.8 117 65.0
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 1.7e-31 139.8 147 57.8
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 1.7e-31 139.8 147 57.8
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 1.7e-31 139.8 143 57.3
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 2.9e-31 139.0 134 58.2
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 2.9e-31 139.0 147 56.5
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 2.9e-31 139.0 147 57.8
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 3.8e-31 138.7 148 56.1
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 3.8e-31 138.7 126 61.9
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 6.4e-31 137.9 147 57.1
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 6.4e-31 137.9 147 56.5
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 8.4e-31 137.5 134 61.2
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 8.4e-31 137.5 140 55.7
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 8.4e-31 137.5 147 55.8
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 8.4e-31 137.5 147 57.8
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 8.4e-31 137.5 136 59.6
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.1e-30 137.1 134 59.7
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.4e-30 136.7 120 63.3
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 1.9e-30 136.3 143 56.6
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 1.9e-30 136.3 138 58.0
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 1.9e-30 136.3 123 62.6
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 1.9e-30 136.3 123 62.6
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 1.9e-30 136.3 123 62.6
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 1.9e-30 136.3 123 62.6
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 1.9e-30 136.3 123 62.6
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 2.4e-30 136.0 135 59.3
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 2.4e-30 136.0 147 58.5
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.4e-30 136.0 139 56.1
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 2.4e-30 136.0 147 56.5
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 2.4e-30 136.0 138 58.0
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 3.2e-30 135.6 145 55.9
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 3.2e-30 135.6 145 55.9
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 4.1e-30 135.2 147 53.7
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 4.1e-30 135.2 147 56.5
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 5.4e-30 134.8 146 57.5
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 5.4e-30 134.8 146 56.2
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 7.1e-30 134.4 148 55.4
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.2e-29 133.7 145 54.5
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 1.2e-29 133.7 134 56.0
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 1.6e-29 133.3 145 54.5
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 1.6e-29 133.3 145 54.5
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 1.6e-29 133.3 145 54.5
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 2.1e-29 132.9 118 62.7
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 2.1e-29 132.9 118 62.7
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 2.7e-29 132.5 146 56.2
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 3.5e-29 132.1 100 68.0
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 4.6e-29 131.7 145 55.2
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 6.0e-29 131.3 146 55.5
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 6.0e-29 131.3 146 55.5
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 7.8e-29 131.0 122 60.7
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 7.8e-29 131.0 149 53.0
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 7.8e-29 131.0 134 57.5
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 1.3e-28 130.2 146 54.8
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 1.3e-28 130.2 146 54.8
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 1.3e-28 130.2 146 54.1
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 1.7e-28 129.8 139 57.6
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 2.3e-28 129.4 146 55.5
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 3.0e-28 129.0 146 54.8
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 8.7e-28 127.5 118 61.9
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 8.7e-28 127.5 151 53.6
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 3.3e-27 125.6 147 56.5
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 7.3e-27 124.4 85 75.3
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 2.1e-26 122.9 86 70.9
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 3.6e-26 122.1 141 53.9
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 9.0e-25 117.5 124 53.2
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 1.9e-22 109.8 67 76.1
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.9e-22 109.8 89 62.9
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 2.4e-22 109.4 119 53.8
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 9.3e-22 107.5 130 46.9
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 3.5e-21 105.5 101 59.4
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 3.5e-21 105.5 157 45.9
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 2.3e-20 102.8 142 47.9
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.4e-17 93.6 147 46.9
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 4.9e-15 85.1 52 76.9
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 5.4e-14 81.6 135 42.2
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 3.0e-12 75.9 100 53.0
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 3.3e-11 72.4 92 50.0
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 6.2e-10 68.2 47 68.1
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 4.0e-09 65.5 100 50.0


User provided reference genes

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