Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 1.6e-58 229.2 112 100.0
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 2.4e-46 188.7 94 98.9
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 1.2e-45 186.4 115 81.7
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 2.3e-41 172.2 112 81.2
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 2.9e-36 155.2 112 73.2
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 7.2e-35 150.6 112 69.6
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.2e-34 149.8 108 72.2
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 2.1e-34 149.1 111 69.4
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.7e-34 148.7 112 68.8
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 2.7e-34 148.7 111 69.4
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 3.6e-34 148.3 111 68.5
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 3.6e-34 148.3 111 68.5
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.7e-34 147.9 112 67.9
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.7e-34 147.9 112 67.9
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 6.1e-34 147.5 111 68.5
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 6.1e-34 147.5 111 68.5
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 6.1e-34 147.5 111 68.5
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 7.9e-34 147.1 112 67.9
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 7.9e-34 147.1 115 67.0
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 1.0e-33 146.7 112 67.9
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.8e-33 146.0 112 66.1
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 2.3e-33 145.6 112 65.2
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 2.3e-33 145.6 112 67.0
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 3.0e-33 145.2 111 65.8
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 3.0e-33 145.2 111 64.9
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 3.0e-33 145.2 115 66.1
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 3.0e-33 145.2 112 67.9
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 3.9e-33 144.8 112 64.3
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 3.9e-33 144.8 111 64.9
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 5.1e-33 144.4 108 68.5
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 5.1e-33 144.4 107 67.3
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 5.1e-33 144.4 112 66.1
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 5.1e-33 144.4 108 65.7
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 6.7e-33 144.1 111 65.8
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 6.7e-33 144.1 111 65.8
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 8.8e-33 143.7 115 61.7
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 8.8e-33 143.7 115 61.7
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 8.8e-33 143.7 115 61.7
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 8.8e-33 143.7 117 64.1
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 8.8e-33 143.7 111 66.7
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.1e-32 143.3 111 66.7
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 1.5e-32 142.9 111 65.8
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 2.0e-32 142.5 108 66.7
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 2.0e-32 142.5 111 64.9
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 2.6e-32 142.1 106 67.9
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 3.3e-32 141.7 111 63.1
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 3.3e-32 141.7 116 62.9
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 4.4e-32 141.4 111 64.9
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 4.4e-32 141.4 111 65.8
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 4.4e-32 141.4 121 61.2
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 4.4e-32 141.4 112 64.3
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.7e-32 141.0 112 64.3
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 7.4e-32 140.6 111 64.9
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 7.4e-32 140.6 112 64.3
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 9.7e-32 140.2 108 64.8
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 9.7e-32 140.2 108 64.8
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 9.7e-32 140.2 108 64.8
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 9.7e-32 140.2 108 64.8
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 9.7e-32 140.2 112 64.3
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 9.7e-32 140.2 111 64.0
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.3e-31 139.8 111 64.0
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.3e-31 139.8 106 67.0
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.7e-31 139.4 112 64.3
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 1.7e-31 139.4 111 64.0
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 1.7e-31 139.4 111 64.9
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.7e-31 139.4 111 64.0
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.7e-31 139.4 117 61.5
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 2.2e-31 139.0 108 64.8
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 2.2e-31 139.0 111 63.1
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 2.8e-31 138.7 112 62.5
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 4.8e-31 137.9 108 63.0
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 4.8e-31 137.9 112 63.4
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 4.8e-31 137.9 112 63.4
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 6.3e-31 137.5 107 64.5
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 8.2e-31 137.1 115 62.6
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.1e-30 136.7 112 60.7
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 1.1e-30 136.7 112 61.6
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.1e-30 136.7 112 62.5
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 1.4e-30 136.3 107 64.5
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 1.4e-30 136.3 112 61.6
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 1.4e-30 136.3 108 63.9
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 1.8e-30 136.0 116 57.8
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.8e-30 136.0 117 61.5
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 2.4e-30 135.6 116 57.8
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 3.1e-30 135.2 112 61.6
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 3.1e-30 135.2 113 63.7
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 4.1e-30 134.8 111 60.4
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 4.1e-30 134.8 112 60.7
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 4.1e-30 134.8 117 59.0
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 5.3e-30 134.4 111 59.5
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.3e-30 134.4 112 61.6
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 5.3e-30 134.4 112 61.6
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 5.3e-30 134.4 109 63.3
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 6.9e-30 134.0 116 56.0
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 6.9e-30 134.0 116 56.0
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 6.9e-30 134.0 112 61.6
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 6.9e-30 134.0 112 58.0
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.2e-29 133.3 116 57.8
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 1.2e-29 133.3 116 57.8
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.2e-29 133.3 111 58.6
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 1.2e-29 133.3 111 60.4
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.5e-29 132.9 112 58.9
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.5e-29 132.9 111 62.2
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 1.5e-29 132.9 112 58.9
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 2.6e-29 132.1 112 58.0
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 2.6e-29 132.1 116 57.8
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 3.4e-29 131.7 108 59.3
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 3.4e-29 131.7 116 56.0
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 1.0e-28 130.2 108 62.0
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 1.0e-28 130.2 112 56.2
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 1.3e-28 129.8 116 56.9
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 1.3e-28 129.8 116 56.9
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 1.3e-28 129.8 116 56.9
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.3e-28 129.8 111 57.7
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.7e-28 129.4 112 59.8
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.2e-28 129.0 108 60.2
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 2.9e-28 128.6 117 58.1
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 3.8e-28 128.3 108 62.0
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 5.0e-28 127.9 112 56.2
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 6.5e-28 127.5 116 55.2
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 6.5e-28 127.5 108 60.2
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 1.1e-27 126.7 112 55.4
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 1.4e-27 126.3 112 56.2
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 2.5e-27 125.6 108 60.2
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 5.5e-27 124.4 108 57.4
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 9.4e-27 123.6 111 56.8
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 9.4e-27 123.6 112 56.2
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.7e-26 122.1 89 64.0
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 4.7e-26 121.3 103 58.3
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.8e-25 119.4 107 55.1
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.8e-25 119.4 106 58.5
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 5.2e-25 117.9 92 67.4
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 6.7e-25 117.5 116 52.6
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 6.7e-25 117.5 112 53.6
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 1.1e-24 116.7 112 53.6
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.0e-24 115.9 107 54.2
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 2.6e-24 115.5 116 50.0
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.6e-24 115.5 92 67.4
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 1.7e-23 112.8 112 51.8
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.6e-21 105.5 93 63.4
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 3.8e-20 101.7 105 47.6
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 7.2e-19 97.4 79 64.6
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 1.8e-17 92.8 122 38.5
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.5e-16 89.7 54 74.1
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 2.6e-16 89.0 57 77.2
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.3e-15 86.7 52 78.8
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 1.3e-15 86.7 108 41.7
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 2.2e-15 85.9 51 80.4
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.8e-14 82.8 110 37.3
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 3.1e-14 82.0 108 40.7
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 2.7e-13 79.0 83 49.4
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.0e-12 77.0 56 71.4
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 2.9e-12 75.5 47 72.3
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 5.5e-11 71.2 101 35.6
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 1.2e-10 70.1 65 61.5
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.2e-10 70.1 50 68.0
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.0e-09 67.0 50 58.0
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 2.6e-08 62.4 41 65.9
PSO063G3403 Papaver somniferum HOM05D000240 ORTHO05D002721 6.3e-07 57.8 54 44.4
PSO017G6761 Papaver somniferum HOM05D000240 ORTHO05D004647 9.1e-06 53.9 54 42.6


User provided reference genes

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