Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 2.8e-149 531.9 270 100.0
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 4.6e-128 461.5 270 85.9
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 1.2e-125 453.4 270 83.7
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 1.1e-124 450.3 269 85.5
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 5.2e-124 448.0 270 83.0
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 3.4e-123 445.3 272 82.4
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 4.4e-123 444.9 236 96.6
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 7.6e-123 444.1 270 84.4
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 3.8e-122 441.8 272 82.0
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 6.4e-122 441.0 270 81.9
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 6.4e-122 441.0 270 81.9
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 6.4e-122 441.0 270 82.2
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 3.2e-121 438.7 270 81.9
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 9.3e-121 437.2 269 81.4
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 9.3e-121 437.2 273 81.0
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 1.2e-120 436.8 271 81.2
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 1.2e-120 436.8 271 81.2
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 3.5e-120 435.3 297 77.1
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 6.0e-120 434.5 270 80.4
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 6.0e-120 434.5 270 80.4
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 1.0e-119 433.7 270 82.2
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 1.0e-119 433.7 269 81.4
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 1.3e-119 433.3 269 80.7
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 1.3e-119 433.3 271 80.4
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 2.3e-119 432.6 270 81.1
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.3e-119 432.6 270 80.0
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 2.3e-119 432.6 270 80.0
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 3.0e-119 432.2 271 80.8
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 3.0e-119 432.2 270 78.9
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 3.0e-119 432.2 272 80.9
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 3.9e-119 431.8 270 80.7
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 5.1e-119 431.4 270 80.4
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 6.6e-119 431.0 272 80.5
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 6.6e-119 431.0 272 80.5
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 8.7e-119 430.6 270 80.7
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 8.7e-119 430.6 271 80.8
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 8.7e-119 430.6 270 79.6
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 1.1e-118 430.3 272 80.9
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 1.5e-118 429.9 270 80.7
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 1.5e-118 429.9 270 80.4
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.5e-118 429.9 272 80.5
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 1.9e-118 429.5 272 80.9
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 7.3e-118 427.6 270 80.0
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 2.8e-117 425.6 273 79.1
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 2.8e-117 425.6 269 79.2
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 3.6e-117 425.2 269 78.4
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 8.1e-117 424.1 269 78.8
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 1.1e-116 423.7 269 78.4
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.4e-116 423.3 271 80.1
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 1.4e-116 423.3 271 78.6
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 4.0e-116 421.8 272 77.6
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 4.0e-116 421.8 270 78.9
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 6.9e-116 421.0 270 79.6
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 6.9e-116 421.0 270 77.4
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 9.0e-116 420.6 273 80.2
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 9.0e-116 420.6 270 77.8
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.2e-115 420.2 270 78.9
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 1.5e-115 419.9 272 80.9
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 1.5e-115 419.9 270 78.1
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 2.0e-115 419.5 271 78.6
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 2.0e-115 419.5 271 78.2
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 2.6e-115 419.1 269 77.3
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 3.4e-115 418.7 271 77.9
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 3.4e-115 418.7 284 75.7
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.3e-114 416.8 271 78.2
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.9e-114 415.6 280 76.4
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 2.9e-114 415.6 271 75.6
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 3.8e-114 415.2 272 75.7
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 4.9e-114 414.8 269 78.4
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 8.4e-114 414.1 270 77.4
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.1e-113 413.7 271 78.2
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 2.4e-113 412.5 282 74.8
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 4.2e-113 411.8 283 75.3
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 2.1e-112 409.5 269 74.7
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 3.5e-112 408.7 271 77.1
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 1.7e-111 406.4 272 78.3
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 6.6e-111 404.4 272 76.8
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 1.9e-110 402.9 270 75.9
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 2.5e-110 402.5 270 75.9
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 2.1e-109 399.4 329 65.7
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 4.8e-109 398.3 273 75.5
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 8.1e-109 397.5 270 74.8
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 1.4e-108 396.7 295 70.2
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 1.4e-108 396.7 305 68.2
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 1.4e-108 396.7 305 68.2
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 1.8e-108 396.4 270 75.6
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 3.1e-108 395.6 270 74.4
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 9.0e-108 394.0 271 73.8
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 4.5e-107 391.7 270 75.6
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 4.5e-107 391.7 286 72.7
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 5.8e-107 391.3 270 74.4
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 7.6e-107 391.0 272 73.5
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 7.6e-107 391.0 272 73.5
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 1.3e-106 390.2 262 77.9
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 2.9e-106 389.0 270 74.1
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 8.4e-106 387.5 230 84.8
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 1.1e-105 387.1 342 61.7
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 1.9e-105 386.3 272 73.9
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 4.2e-105 385.2 261 75.9
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 9.3e-105 384.0 272 75.0
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 1.6e-104 383.3 292 66.1
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 2.7e-104 382.5 273 73.3
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 2.3e-103 379.4 270 72.2
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 3.0e-103 379.0 269 71.7
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 3.0e-103 379.0 269 72.1
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 8.7e-103 377.5 272 71.0
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 1.1e-102 377.1 272 73.5
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 1.6e-101 373.2 253 73.9
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 8.1e-101 370.9 272 73.5
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 1.8e-100 369.8 273 68.9
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.8e-100 369.8 276 70.3
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 6.9e-100 367.9 231 81.4
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 2.6e-99 365.9 230 80.0
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 2.6e-99 365.9 317 62.8
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 4.5e-99 365.2 275 70.2
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 1.4e-97 360.1 272 68.4
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 4.2e-97 358.6 275 70.2
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 4.2e-97 358.6 232 79.7
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 1.6e-96 356.7 331 61.0
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 4.6e-96 355.1 273 70.0
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 1.3e-95 353.6 273 70.0
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 4.5e-91 338.6 241 71.8
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 1.9e-89 333.2 267 65.9
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 2.5e-89 332.8 230 72.6
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 2.7e-88 329.3 260 68.1
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 3.5e-88 328.9 278 65.1
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 3.5e-88 328.9 234 70.1
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.3e-87 327.0 271 63.5
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 1.9e-86 323.2 337 56.7
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 2.2e-85 319.7 231 73.6
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 4.5e-83 312.0 270 64.8
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 1.9e-81 306.6 358 53.4
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 3.6e-80 302.4 284 59.5
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 3.0e-79 299.3 278 60.4
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 1.3e-77 293.9 267 60.3
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 5.3e-76 288.5 233 67.0
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 3.0e-71 272.7 267 58.4
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 8.8e-71 271.2 176 79.5
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 2.0e-70 270.0 181 77.9
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 3.7e-69 265.8 275 53.5
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 3.1e-68 262.7 227 63.9
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 4.1e-68 262.3 201 70.6
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 4.1e-68 262.3 173 73.4
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 4.1e-68 262.3 260 53.8
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 7.0e-68 261.5 229 61.1
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 9.1e-68 261.2 269 53.9
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 9.1e-68 261.2 271 55.4
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 7.7e-67 258.1 260 52.7
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 3.6e-64 249.2 172 71.5
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.1e-62 244.2 175 69.7
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 9.1e-60 234.6 160 71.9
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 3.5e-59 232.6 162 74.7
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 1.6e-56 223.8 161 68.3
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 4.7e-56 222.2 153 71.2
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 8.8e-55 218.0 169 68.6
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 9.1e-52 208.0 257 50.2
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 7.7e-51 204.9 131 77.9
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 7.2e-49 198.4 234 48.7
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 1.6e-48 197.2 212 52.8
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 8.0e-48 194.9 151 67.5
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 9.8e-46 188.0 125 72.8
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.4e-44 184.1 198 54.5
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 6.6e-42 175.3 232 46.1
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 6.6e-42 175.3 133 71.4
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 4.9e-37 159.1 182 51.6
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 1.4e-36 157.5 139 60.4
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.0e-34 151.4 162 53.7
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 5.2e-31 139.0 271 37.3
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 9.8e-30 134.8 101 69.3
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 2.7e-27 126.7 88 72.7
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 6.0e-27 125.6 149 53.7
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 2.3e-23 113.6 71 77.5
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 7.5e-22 108.6 74 73.0
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 9.2e-20 101.7 65 73.8
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 6.0e-19 99.0 151 41.1
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 1.2e-16 91.3 74 63.5
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.3e-09 66.6 42 78.6
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 3.3e-09 66.6 41 73.2
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.6e-08 63.2 138 34.1
HPP92_019650 Vanilla planifolia HOM05D001715 ORTHO05D004824 1.4e-07 61.2 175 31.4
CSS0014250 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 7.6e-06 55.5 34 73.5


User provided reference genes

Program Settings