Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2933.3 1494 100.0
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2543.1 1498 84.8
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2501.5 1500 84.5
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2488.4 1500 83.5
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2486.4 1498 83.9
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2482.2 1534 81.9
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2474.1 1500 82.9
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2472.2 1499 82.9
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2464.1 1502 83.2
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2462.2 1500 82.7
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2443.7 1499 82.3
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2442.9 1502 82.0
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2442.5 1500 82.0
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2422.1 1503 81.1
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2398.6 1497 81.0
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2392.1 1500 80.3
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2391.3 1496 80.9
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2382.4 1500 80.5
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2379.7 1499 80.2
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2375.1 1500 79.9
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2369.3 1499 79.5
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2366.7 1498 80.4
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2366.3 1490 80.1
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2365.5 1501 79.8
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2360.1 1499 79.3
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2358.2 1483 80.6
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2357.8 1498 79.4
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2357.4 1499 79.3
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2357.4 1498 78.8
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2356.6 1498 78.8
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2348.5 1498 78.6
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2347.4 1499 78.9
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2347.0 1500 79.3
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2339.7 1498 78.2
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2338.5 1500 78.1
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2333.1 1499 78.8
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2330.8 1503 78.1
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2327.4 1489 78.4
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2325.1 1499 78.3
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2319.3 1498 77.2
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2309.6 1499 77.5
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2304.2 1558 76.3
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2297.3 1537 75.3
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2296.2 1495 77.0
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2292.3 1490 77.2
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2283.1 1455 80.2
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2281.9 1492 77.0
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2281.1 1498 76.3
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2278.8 1497 76.5
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2273.8 1497 76.5
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2264.6 1487 76.8
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2256.1 1503 77.1
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2254.2 1487 76.5
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2252.2 1498 75.6
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2251.9 1499 76.1
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2249.9 1573 74.1
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2244.9 1491 77.1
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2242.2 1496 76.1
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2234.5 1501 74.4
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2226.1 1490 75.2
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2222.6 1499 74.7
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2220.7 1500 74.7
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 2205.6 1500 74.5
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2196.8 1495 76.2
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2191.8 1496 75.3
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2190.2 1495 75.2
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2187.5 1495 75.2
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2179.8 1495 75.2
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2178.7 1505 75.0
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2178.3 1495 74.8
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2176.0 1495 75.0
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2173.7 1495 74.9
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2172.1 1556 72.0
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2171.7 1505 74.7
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2167.9 1498 73.9
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2164.8 1494 74.9
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2160.2 1502 74.6
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2159.0 1504 74.4
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2156.3 1505 74.2
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 2156.3 1488 73.1
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2155.6 1500 72.2
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2151.7 1496 73.5
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2151.3 1506 74.5
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2149.4 1510 74.2
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2149.0 1496 74.3
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2129.0 1493 72.3
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2124.0 1483 72.9
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2123.2 1495 72.0
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2120.5 1308 82.3
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2104.3 1311 81.8
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 2095.9 1479 72.5
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 2093.5 1311 81.9
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 2085.1 1464 73.6
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 2077.0 1596 69.5
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2071.6 1577 68.7
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2065.4 1279 80.7
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 2032.3 1505 69.8
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1952.9 1393 74.0
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1946.0 1304 75.6
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1929.1 1486 66.9
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1916.0 1375 72.7
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1904.8 1226 79.1
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1904.4 1493 65.4
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1882.1 1445 67.8
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1807.7 1442 64.6
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1805.4 1673 58.5
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1683.7 988 84.1
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1629.8 1521 56.5
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1626.3 1529 56.5
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1539.6 1422 60.1
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1467.2 1088 70.7
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1440.2 1376 58.0
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1415.6 1222 60.1
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1383.2 1304 56.4
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1383.2 1375 56.4
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1182.9 741 84.2
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1158.7 1285 52.7
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1132.5 749 75.3
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 3.5e-310 1068.9 848 63.8
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 4.9e-272 942.2 778 64.5
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 7.1e-263 911.8 925 56.3
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 1.3e-259 901.0 716 66.5
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 8.4e-248 861.7 579 72.0
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 1.0e-213 748.4 613 63.3
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 8.0e-206 722.2 600 64.8
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 4.5e-201 706.4 892 47.8
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.3e-195 688.3 373 86.3
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 1.8e-178 631.3 443 77.9
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.9e-175 621.3 745 47.1
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 3.4e-172 610.5 480 70.4
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 6.4e-163 579.7 475 65.3
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 1.4e-141 508.8 581 50.8
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.3e-120 439.1 777 39.4
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.3e-102 379.4 444 48.4
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 3.7e-102 377.9 1603 27.6
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 1.8e-101 375.6 218 88.1
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 2.1e-97 362.1 1741 25.7
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.2e-87 329.7 351 55.3
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 2.0e-87 328.9 1613 24.9
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.1e-82 313.2 224 70.1
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.7e-78 299.3 230 67.0
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.2e-73 283.1 247 64.8
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 8.0e-73 280.4 273 60.4
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 1.0e-72 280.0 155 80.6
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 2.0e-71 275.8 195 71.8
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 3.7e-70 271.6 152 81.6
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 1.2e-47 196.8 102 89.2
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 2.4e-45 189.1 185 58.4
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 2.7e-44 185.7 186 55.4
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 1.9e-42 179.5 218 54.1
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 2.0e-39 169.5 159 56.0
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 2.7e-36 159.1 130 63.1
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 1.0e-35 157.1 128 65.6
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.3e-34 152.1 344 34.6
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 1.6e-28 133.3 107 65.4
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 7.8e-28 131.0 96 68.8
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 5.1e-27 128.3 101 70.3
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 4.8e-25 121.7 56 92.9
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 5.3e-24 118.2 349 28.1
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 1.5e-23 116.7 67 79.1
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 9.9e-23 114.0 65 78.5
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.3e-19 102.8 153 43.1
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 8.1e-17 94.4 70 64.3
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 5.8e-15 88.2 110 50.9
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 7.6e-15 87.8 53 79.2
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 7.6e-15 87.8 53 79.2
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 2.8e-09 69.3 34 88.2
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 3.7e-09 68.9 54 64.8
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 1.1e-08 67.4 40 80.0
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 1.2e-07 63.9 157 28.0
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 2.6e-07 62.8 157 28.0


User provided reference genes

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