Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 8.6e-149 530.4 289 100.0
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 7.5e-52 208.4 283 47.3
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 4.1e-50 202.6 282 47.5
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 4.1e-50 202.6 283 47.0
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 8.6e-48 194.9 288 46.2
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 5.5e-47 192.2 289 47.1
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.6e-46 190.7 302 43.4
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.1e-46 190.3 288 44.4
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 4.7e-46 189.1 291 48.5
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 1.4e-45 187.6 319 46.1
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.8e-45 187.2 291 44.0
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 1.5e-44 184.1 285 45.6
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 1.3e-43 181.0 293 44.0
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 6.3e-43 178.7 293 44.4
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 1.2e-41 174.5 291 43.6
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 2.3e-40 170.2 293 43.0
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 3.9e-40 169.5 295 43.1
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 6.6e-40 168.7 281 40.9
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 9.5e-39 164.9 251 46.2
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 2.0e-36 157.1 292 41.8
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 1.3e-35 154.5 301 38.2
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 2.2e-35 153.7 293 40.3
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.9e-34 150.6 285 41.4
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.9e-34 150.6 266 44.4
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 7.8e-33 145.2 288 39.2
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 3.0e-32 143.3 296 40.9
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 3.3e-31 139.8 280 38.6
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.2e-30 137.9 283 36.0
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 1.2e-30 137.9 282 36.9
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 2.1e-30 137.1 289 35.6
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 8.0e-30 135.2 277 39.7
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 1.1e-29 134.8 288 37.2
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 1.8e-29 134.0 311 36.7
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 3.1e-29 133.3 280 37.9
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 3.1e-29 133.3 283 38.5
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 4.0e-29 132.9 290 37.2
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 4.0e-29 132.9 283 39.2
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 4.0e-29 132.9 253 42.3
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 4.0e-29 132.9 286 38.1
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 6.8e-29 132.1 276 39.1
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 1.2e-28 131.3 280 36.4
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 4.4e-28 129.4 292 38.7
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 7.5e-28 128.6 291 37.5
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 9.8e-28 128.3 281 38.4
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 3.7e-27 126.3 292 38.0
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 4.1e-26 122.9 273 35.9
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 1.2e-25 121.3 285 35.8
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 2.7e-25 120.2 293 34.1
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 3.0e-24 116.7 285 34.7
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 3.9e-24 116.3 287 35.5
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 6.6e-24 115.5 281 37.4
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 8.6e-24 115.2 283 35.0
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 8.6e-24 115.2 287 35.5
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.1e-23 114.8 281 37.4
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 1.9e-23 114.0 290 36.2
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 1.9e-23 114.0 296 33.4
Sabra06G0191500 Salix brachista HOM05D003500 ORTHO05D003919 3.3e-23 113.2 189 44.4
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 2.1e-22 110.5 244 38.5
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 2.8e-22 110.2 291 36.4
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 3.6e-22 109.8 281 35.2
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 6.2e-22 109.0 293 35.2
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.4e-21 107.8 289 34.6
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 1.8e-21 107.5 284 33.8
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 2.3e-21 107.1 281 33.8
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 5.2e-21 105.9 301 34.6
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 5.2e-21 105.9 297 33.0
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 5.2e-21 105.9 281 33.1
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 6.8e-21 105.5 289 34.6
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 6.8e-21 105.5 289 35.6
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 1.2e-20 104.8 293 32.8
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.5e-20 104.4 294 35.0
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.5e-20 104.4 286 32.2
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 2.6e-20 103.6 282 32.3
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 3.4e-20 103.2 274 36.5
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 3.4e-20 103.2 352 33.0
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 5.8e-20 102.4 281 34.9
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 5.8e-20 102.4 285 35.1
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 5.8e-20 102.4 285 35.1
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 9.9e-20 101.7 288 32.6
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 9.9e-20 101.7 289 32.5
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 1.3e-19 101.3 352 32.4
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 2.2e-19 100.5 291 34.4
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 2.2e-19 100.5 285 33.3
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 2.9e-19 100.1 298 32.9
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 3.7e-19 99.8 290 31.7
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 4.9e-19 99.4 181 40.9
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 4.9e-19 99.4 283 32.2
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 6.4e-19 99.0 285 34.7
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 6.4e-19 99.0 294 33.7
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 1.1e-18 98.2 161 40.4
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 2.4e-18 97.1 136 45.6
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 3.2e-18 96.7 278 32.7
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 4.1e-18 96.3 285 34.0
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 7.1e-18 95.5 289 33.9
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 1.2e-17 94.7 289 31.8
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 1.2e-17 94.7 289 31.8
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 1.6e-17 94.4 325 29.8
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.6e-17 94.4 289 33.6
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 1.6e-17 94.4 286 33.2
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.6e-17 94.4 281 31.0
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 2.1e-17 94.0 279 32.3
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 2.1e-17 94.0 297 31.3
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 2.7e-17 93.6 285 33.3
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 4.6e-17 92.8 209 38.8
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 7.8e-17 92.0 285 33.0
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 1.0e-16 91.7 175 38.9
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 3.0e-16 90.1 284 35.2
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 3.9e-16 89.7 284 31.3
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 8.6e-16 88.6 291 31.3
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 1.1e-15 88.2 141 41.8
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 1.1e-15 88.2 295 30.5
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 1.5e-15 87.8 290 32.1
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 1.5e-15 87.8 288 32.3
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 2.5e-15 87.0 293 32.4
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 5.6e-15 85.9 285 31.6
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 9.6e-15 85.1 307 32.9
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 1.2e-14 84.7 132 34.8
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 2.8e-14 83.6 150 37.3
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 6.2e-14 82.4 180 36.1
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 1.4e-13 81.3 299 31.4
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 4.0e-13 79.7 218 32.6
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 4.0e-13 79.7 289 32.2
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 1.5e-12 77.8 313 30.0
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 1.5e-12 77.8 318 29.9
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 2.0e-12 77.4 203 32.0
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 2.6e-12 77.0 224 31.7
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 4.4e-12 76.3 278 29.9
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 7.6e-12 75.5 286 29.7
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 7.6e-12 75.5 278 28.1
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 9.9e-12 75.1 286 30.1
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 9.9e-12 75.1 279 29.4
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 1.7e-11 74.3 282 28.0
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 2.2e-11 73.9 317 30.3
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 3.8e-11 73.2 305 28.5
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 4.9e-11 72.8 282 31.9
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 6.4e-11 72.4 287 30.3
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 8.4e-11 72.0 286 29.7
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 8.4e-11 72.0 300 27.7
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 2.4e-10 70.5 291 28.2
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 3.2e-10 70.1 135 39.3
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 5.4e-10 69.3 289 29.8
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 9.3e-10 68.6 130 39.2
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 1.6e-09 67.8 313 27.2
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 1.6e-09 67.8 139 33.8
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 2.1e-09 67.4 280 26.4
Sabra03G0031200 Salix brachista HOM05D003500 ORTHO05D003919 3.5e-09 66.6 79 49.4
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 4.6e-09 66.2 301 30.2
Lsat_1_v5_gn_6_63900 Lactuca sativa HOM05D003500 ORTHO05D003919 4.6e-09 66.2 265 29.1
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 4.6e-09 66.2 304 28.9
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 6.0e-09 65.9 232 29.7
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.0e-08 65.1 289 31.8
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 1.0e-08 65.1 293 29.4
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 2.3e-08 63.9 285 28.1
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 3.0e-08 63.5 179 30.7
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 5.1e-08 62.8 275 30.5
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 6.6e-08 62.4 282 27.7
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.5e-07 61.2 177 35.0
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 1.9e-07 60.8 288 27.8
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 2.5e-07 60.5 281 27.8
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 4.3e-07 59.7 232 33.2
unitig_899.g14777 Utricularia gibba HOM05D003500 ORTHO05D003919 5.6e-07 59.3 142 35.9
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 7.3e-07 58.9 288 29.5
CSS0016282 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 9.6e-07 58.5 95 42.1
CSS0048346 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 9.6e-07 58.5 95 42.1
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 9.6e-07 58.5 314 25.8
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 9.6e-07 58.5 282 28.4
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 1.3e-06 58.2 278 27.7
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 2.1e-06 57.4 278 27.7
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 2.1e-06 57.4 282 29.4
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 2.8e-06 57.0 278 27.3
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 3.6e-06 56.6 278 27.7
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 8.1e-06 55.5 225 31.6


User provided reference genes

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