Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2486.1 1260 100.0
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2275.7 1253 91.1
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2272.7 1253 90.9
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2238.4 1253 89.8
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2218.0 1255 88.7
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2217.6 1253 88.9
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2215.3 1255 88.8
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2207.6 1253 87.9
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2205.6 1253 88.2
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2203.3 1255 88.4
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2197.5 1253 87.6
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2193.3 1253 87.9
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2187.1 1253 87.4
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2182.9 1254 86.9
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2182.9 1254 86.8
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2176.0 1253 86.6
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2173.3 1265 86.6
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2173.3 1254 86.5
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2171.4 1253 86.7
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2170.2 1254 87.6
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2168.7 1259 86.2
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2162.1 1253 86.4
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2156.3 1253 85.5
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2156.3 1254 86.1
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2153.6 1254 85.6
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2149.0 1211 88.9
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2144.0 1253 84.8
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2141.7 1254 85.7
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2137.8 1254 85.2
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2137.1 1254 84.5
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2134.4 1254 84.6
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2125.5 1253 84.2
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2123.6 1254 84.0
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2122.8 1255 84.0
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2120.1 1253 85.1
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2118.2 1254 83.8
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2114.0 1345 80.2
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2112.8 1254 84.8
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2111.6 1254 83.5
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2109.0 1297 83.1
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2107.4 1254 83.9
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2103.6 1253 83.5
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2101.6 1253 82.4
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2100.1 1253 83.9
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2098.9 1254 82.9
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2097.0 1255 83.0
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2095.5 1253 82.3
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2095.1 1253 83.7
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2095.1 1257 83.2
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2093.9 1290 82.2
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2090.1 1266 81.1
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2083.5 1257 82.7
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2080.4 1269 83.1
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2079.7 1252 81.9
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2073.1 1254 82.5
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2068.1 1253 81.9
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2060.4 1264 80.9
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2052.3 1277 80.5
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2045.4 1348 77.9
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2043.9 1271 81.2
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2041.9 1254 80.9
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2041.5 1254 81.4
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2039.2 1283 79.6
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2036.9 1268 81.2
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2036.2 1272 80.7
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2035.4 1268 81.0
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2035.4 1261 80.9
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2034.2 1273 80.8
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2033.5 1273 80.5
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2033.1 1273 80.6
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2032.3 1273 80.5
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2027.7 1261 80.1
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2014.2 1283 80.0
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 1999.9 1233 81.5
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 1957.2 1278 79.3
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 1922.1 1088 87.3
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 1911.7 1563 66.0
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1908.3 1254 76.7
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1906.0 1255 76.3
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1899.4 1255 76.1
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1861.7 1262 74.6
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 1850.5 1168 80.4
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1842.8 1302 72.7
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1823.5 1257 72.6
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1814.3 1095 81.7
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1793.5 1260 74.1
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1766.9 1257 70.4
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1753.0 1260 70.6
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1669.1 1434 62.6
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1515.4 930 79.8
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1392.1 977 73.1
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1339.7 1036 65.4
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1332.4 1282 53.6
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1302.0 1282 52.7
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1286.2 1271 51.9
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1281.9 1254 52.3
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1239.9 815 76.9
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1238.4 687 89.4
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1219.9 761 79.6
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1214.9 881 67.4
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1189.1 791 76.2
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 1.0e-302 1043.9 580 90.5
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 4.3e-277 958.7 601 81.5
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 8.1e-260 901.4 700 61.7
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 1.3e-236 824.3 452 90.7
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 2.5e-221 773.5 515 75.7
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 1.3e-177 628.2 1454 29.8
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 3.4e-165 587.0 536 60.1
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 1.5e-160 571.6 349 84.2
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 2.8e-159 567.4 410 69.5
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 8.7e-137 492.7 535 50.3
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 2.7e-122 444.5 538 49.8
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.8e-110 405.2 232 84.5
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 8.7e-105 386.3 269 71.7
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 2.8e-95 354.8 215 79.5
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 3.3e-88 331.3 418 46.7
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 4.1e-86 324.3 192 80.2
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 4.0e-73 281.2 299 53.8
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 5.7e-64 250.8 145 84.1
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 6.8e-57 227.3 161 73.3
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 9.2e-46 190.3 133 76.7
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 6.0e-45 187.6 128 68.0
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 4.1e-38 164.9 116 73.3
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 3.3e-35 155.2 94 83.0
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 6.8e-33 147.5 112 67.0
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 2.2e-31 142.5 84 83.3
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 7.8e-29 134.0 101 70.3
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 1.7e-28 132.9 83 73.5
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 1.5e-27 129.8 211 42.7
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 4.3e-27 128.3 86 75.6
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 1.3e-23 116.7 239 36.8
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 4.2e-22 111.7 165 40.6
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 9.3e-22 110.5 99 54.5
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 6.0e-21 107.8 68 82.4
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 8.1e-18 97.4 53 90.6
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.1e-17 97.1 124 46.0
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 5.3e-17 94.7 109 49.5
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.2e-15 89.4 50 90.0
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 1.9e-14 86.3 54 81.5
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 1.9e-14 86.3 100 50.0
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 1.0e-12 80.5 50 76.0
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 1.0e-12 80.5 50 76.0
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 1.3e-12 80.1 45 86.7
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 1.1e-11 77.0 42 90.5
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 4.5e-08 65.1 35 91.4
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 4.5e-08 65.1 35 91.4
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 4.5e-08 65.1 35 91.4
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 4.5e-08 65.1 35 91.4
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 4.5e-08 65.1 35 91.4
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 2.2e-07 62.8 54 55.6
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 6.4e-07 61.2 34 88.2


User provided reference genes

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