Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 5.8e-311 1070.1 562 100.0
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.8e-251 872.5 569 79.6
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 4.9e-249 864.4 569 79.3
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 8.3e-249 863.6 569 77.3
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 4.1e-248 861.3 570 78.8
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 1.2e-247 859.8 569 78.4
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 6.6e-246 854.0 569 77.5
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 6.2e-244 847.4 568 77.5
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 8.1e-244 847.0 568 77.8
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 2.6e-242 842.0 562 77.8
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 3.4e-242 841.6 563 76.9
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 3.7e-241 838.2 566 76.5
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 8.3e-241 837.0 557 78.8
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 1.1e-240 836.6 563 76.4
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.1e-240 836.6 568 75.7
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 7.1e-240 833.9 563 76.6
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 7.1e-240 833.9 556 77.0
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 7.3e-237 823.9 569 75.2
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 9.6e-237 823.5 555 76.0
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 2.8e-236 822.0 568 73.6
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 1.4e-235 819.7 563 73.5
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 1.8e-235 819.3 568 73.2
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 1.8e-235 819.3 590 73.6
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 4.0e-235 818.1 566 74.9
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 6.8e-235 817.4 569 73.1
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 9.9e-234 813.5 570 72.6
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 8.4e-233 810.4 544 75.7
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 4.2e-232 808.1 589 72.5
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 9.3e-232 807.0 563 75.1
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 2.1e-231 805.8 562 74.7
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 2.1e-231 805.8 561 71.8
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 3.9e-230 801.6 567 72.8
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 3.3e-229 798.5 550 74.5
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 9.6e-229 797.0 577 71.8
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 2.8e-228 795.4 551 74.4
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 8.1e-228 793.9 521 76.2
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 3.1e-227 792.0 519 77.3
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 5.3e-227 791.2 571 71.6
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 9.0e-227 790.4 573 72.4
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 2.0e-226 789.3 555 74.6
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 4.4e-226 788.1 533 75.6
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 4.4e-226 788.1 567 72.5
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 7.6e-226 787.3 548 74.1
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 9.9e-226 786.9 555 73.2
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 9.9e-226 786.9 549 71.9
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 1.7e-225 786.2 526 74.0
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 3.8e-225 785.0 526 75.7
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 4.9e-225 784.6 533 75.2
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 4.9e-225 784.6 554 72.6
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 2.4e-224 782.3 515 76.7
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 3.2e-224 781.9 523 75.7
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 1.6e-223 779.6 525 76.4
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 2.7e-223 778.9 562 71.9
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 2.7e-223 778.9 550 72.5
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 1.7e-222 776.2 583 70.3
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 3.0e-222 775.4 542 73.2
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 6.6e-222 774.2 537 74.1
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 1.9e-221 772.7 572 74.1
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 7.3e-221 770.8 548 73.0
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 7.3e-221 770.8 548 72.3
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 1.3e-220 770.0 517 77.2
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 1.6e-220 769.6 514 75.9
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 4.8e-220 768.1 531 75.3
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 6.2e-220 767.7 559 71.7
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 1.1e-219 766.9 554 71.1
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 2.4e-219 765.8 533 74.5
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 3.1e-219 765.4 518 75.3
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 3.1e-219 765.4 533 74.5
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 5.3e-219 764.6 455 81.1
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 5.3e-219 764.6 550 72.9
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 1.5e-218 763.1 528 74.8
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 2.6e-218 762.3 533 73.9
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 3.4e-218 761.9 517 73.9
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 5.8e-218 761.1 553 70.7
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 4.9e-217 758.1 528 73.9
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.4e-216 756.5 572 70.1
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.9e-216 756.1 597 68.0
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 1.9e-216 756.1 551 71.5
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 3.2e-216 755.4 558 71.5
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 7.1e-216 754.2 568 69.4
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 6.0e-215 751.1 493 76.7
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 1.3e-214 750.0 507 74.4
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 9.6e-213 743.8 536 70.1
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 1.6e-212 743.0 534 72.1
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.1e-212 742.7 596 67.3
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 4.8e-212 741.5 496 75.0
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 2.2e-209 732.6 580 67.9
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 6.5e-209 731.1 447 79.4
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 4.2e-208 728.4 655 61.5
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 1.8e-206 723.0 430 80.5
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 3.9e-206 721.8 515 73.2
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 3.9e-206 721.8 456 78.3
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 8.7e-206 720.7 567 67.7
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 3.3e-205 718.8 518 71.0
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 3.7e-204 715.3 483 73.5
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 1.5e-202 709.9 443 76.3
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 7.1e-200 701.0 566 68.2
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 4.7e-183 645.2 374 84.0
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.5e-181 640.2 514 61.5
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 1.1e-179 634.0 419 75.9
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 3.7e-164 582.4 385 77.9
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 6.1e-159 565.1 424 70.0
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 1.3e-156 557.4 438 68.0
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 1.1e-155 554.3 434 62.0
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 7.7e-154 548.1 439 60.6
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 2.3e-145 520.0 437 58.8
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 7.8e-138 495.0 448 54.9
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 1.3e-116 424.5 557 47.6
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 1.4e-115 421.0 437 49.4
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.1e-112 411.4 521 48.4
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 1.6e-111 407.5 490 46.7
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 6.9e-110 402.1 449 51.2
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 9.0e-110 401.7 519 47.2
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.5e-109 401.0 572 46.2
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 1.8e-102 377.5 532 46.4
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 2.4e-102 377.1 479 44.7
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 6.9e-102 375.6 534 46.6
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.2e-101 374.8 255 74.5
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 1.0e-84 318.5 176 86.9
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 2.1e-82 310.8 481 40.1
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 2.2e-76 290.8 169 81.7
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 6.5e-60 236.1 216 63.9
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 5.4e-46 189.9 163 64.4
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 3.7e-39 167.2 138 64.5
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 4.1e-38 163.7 133 64.7
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 4.1e-30 137.1 105 63.8
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.6e-29 135.2 87 79.3
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 4.9e-23 113.6 141 43.3
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 7.0e-22 109.8 105 60.0
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 3.6e-18 97.4 58 82.8
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 3.1e-17 94.4 145 49.7
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 1.2e-16 92.4 127 50.4
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 3.4e-16 90.9 139 49.6
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 4.9e-15 87.0 117 48.7
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 7.1e-14 83.2 122 46.7
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 2.4e-06 58.2 38 71.1


User provided reference genes

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