Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 5.3e-227 790.8 433 100.0
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 3.5e-202 708.4 430 85.8
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.7e-201 706.1 428 85.0
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 8.5e-201 703.7 433 85.0
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 9.4e-200 700.3 433 88.7
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 9.4e-200 700.3 432 84.7
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 1.3e-196 689.9 431 83.5
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 2.2e-196 689.1 433 84.5
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 8.2e-196 687.2 431 86.1
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.0e-194 682.6 433 86.1
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 4.5e-194 681.4 434 85.0
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 1.3e-193 679.9 434 85.5
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 3.8e-193 678.3 431 82.1
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 5.0e-193 677.9 434 82.0
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 3.6e-191 671.8 432 84.0
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 4.7e-191 671.4 433 87.5
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 4.0e-190 668.3 466 80.3
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 5.2e-190 667.9 427 82.7
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 4.4e-189 664.8 433 85.0
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 2.2e-188 662.5 430 81.6
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 2.8e-188 662.1 435 82.3
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 6.3e-188 661.0 450 80.2
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 1.8e-187 659.4 428 81.1
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 2.7e-186 655.6 431 80.0
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 3.8e-185 651.7 428 80.1
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 8.5e-185 650.6 433 82.9
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.9e-184 649.4 431 80.7
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 3.2e-184 648.7 426 78.9
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 4.2e-184 648.3 432 81.0
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 5.5e-184 647.9 434 83.2
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 5.5e-184 647.9 433 82.7
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 2.7e-183 645.6 426 79.1
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.3e-182 642.5 432 81.9
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 3.0e-182 642.1 431 81.2
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 4.0e-182 641.7 428 83.6
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 4.0e-182 641.7 423 80.1
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 4.0e-182 641.7 423 80.1
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 4.0e-182 641.7 427 84.8
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 6.8e-182 641.0 423 79.9
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 6.8e-182 641.0 423 79.9
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 6.8e-182 641.0 423 79.9
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 8.8e-182 640.6 427 82.7
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 8.8e-182 640.6 427 76.6
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 1.5e-181 639.8 423 83.5
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 4.4e-181 638.3 433 77.6
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 1.7e-180 636.3 422 80.1
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 1.8e-179 632.9 423 79.0
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 1.8e-179 632.9 429 82.1
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 2.4e-179 632.5 425 83.8
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 2.0e-178 629.4 423 78.0
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 4.5e-178 628.2 436 77.5
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 2.3e-177 625.9 423 78.7
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 2.3e-177 625.9 425 78.6
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 2.3e-177 625.9 434 77.0
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 1.5e-176 623.2 426 76.5
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 1.9e-176 622.9 434 75.6
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 3.3e-176 622.1 423 78.3
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 3.3e-176 622.1 436 76.8
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 1.2e-175 620.2 433 83.1
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 2.1e-175 619.4 424 76.7
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 2.8e-175 619.0 436 76.8
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 3.6e-175 618.6 423 78.7
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 4.7e-175 618.2 434 75.6
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 1.4e-174 616.7 475 71.8
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 3.0e-174 615.5 423 77.8
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 3.0e-174 615.5 434 75.1
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 6.8e-174 614.4 425 77.2
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 6.8e-174 614.4 434 74.9
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 1.2e-173 613.6 434 74.7
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 3.4e-173 612.1 440 74.8
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 4.4e-173 611.7 432 74.8
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 1.7e-172 609.8 434 74.4
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 8.3e-172 607.4 414 78.3
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 8.3e-172 607.4 431 73.5
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.4e-171 606.7 424 74.3
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 1.8e-171 606.3 451 73.8
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 2.4e-171 605.9 427 80.6
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 2.4e-171 605.9 424 76.2
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 4.1e-171 605.1 428 75.7
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 1.2e-170 603.6 431 75.6
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 1.2e-170 603.6 431 74.2
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 3.5e-170 602.1 386 80.3
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 4.5e-170 601.7 446 74.0
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 5.9e-170 601.3 442 74.2
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 1.3e-169 600.1 427 74.5
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 1.7e-169 599.7 427 74.0
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 3.9e-169 598.6 414 78.0
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 1.5e-168 596.7 404 77.0
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 3.3e-168 595.5 429 73.2
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.8e-167 592.4 432 73.4
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 2.3e-166 589.3 426 74.4
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 2.3e-166 589.3 412 82.0
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 6.8e-166 587.8 426 73.2
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 9.8e-165 583.9 429 72.0
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.4e-163 580.1 471 70.7
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 2.0e-162 576.2 430 75.8
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 1.3e-161 573.5 423 71.4
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 3.9e-161 572.0 429 70.6
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 8.6e-161 570.9 437 72.3
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 4.3e-160 568.5 521 65.5
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 3.6e-159 565.5 471 67.3
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 4.9e-156 555.1 515 61.2
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 4.9e-156 555.1 433 70.9
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 2.1e-154 549.7 388 82.2
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 3.5e-154 548.9 385 81.6
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 7.3e-152 541.2 491 68.0
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 8.1e-151 537.7 434 69.8
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 8.1e-151 537.7 390 73.6
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.4e-149 532.3 381 81.1
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 2.2e-148 529.6 424 68.9
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.1e-146 523.1 433 68.4
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 1.0e-145 520.8 433 66.5
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 7.6e-141 504.6 421 65.1
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 5.6e-136 488.4 418 64.8
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 2.6e-133 479.6 322 83.9
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 2.9e-132 476.1 371 70.1
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 4.2e-131 472.2 419 66.1
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 6.6e-129 464.9 442 57.2
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 7.3e-128 461.5 417 59.0
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 1.3e-127 460.7 394 66.8
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.4e-123 447.2 399 62.9
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 1.8e-121 440.3 418 56.2
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 3.0e-121 439.5 432 62.0
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 3.9e-121 439.1 337 69.7
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 8.7e-121 438.0 429 57.1
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.6e-111 407.1 436 52.5
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.3e-105 386.7 355 61.7
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 4.5e-69 266.2 230 62.2
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 1.8e-65 254.2 420 36.9
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 4.7e-58 229.6 427 35.4
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 1.1e-43 181.8 204 61.8
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 4.1e-30 136.7 84 81.0
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.8e-18 97.4 46 97.8
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.8e-18 97.4 46 97.8
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 6.2e-18 96.3 55 83.6
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 8.1e-10 69.3 52 73.1


User provided reference genes

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