Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G143200 Manihot esculenta HOM05D006130 ORTHO05D007491 5.1e-226 787.3 380 100.0
Potri.007G080500 Populus trichocarpa HOM05D006130 ORTHO05D007491 1.1e-138 497.3 377 67.6
Ciclev10026167m.g Citrus clementina HOM05D006130 ORTHO05D007491 6.4e-136 488.0 381 64.0
Atru.chr4.339 Acer truncatum HOM05D006130 ORTHO05D007491 2.4e-135 486.1 385 64.2
Sabra07G0067600 Salix brachista HOM05D006130 ORTHO05D007491 4.2e-135 485.3 377 65.8
Haze_25050 Corylus avellana HOM05D006130 ORTHO05D007491 1.6e-134 483.4 379 62.8
Cfa002758 Carpinus fangiana HOM05D006130 ORTHO05D007491 3.5e-134 482.3 381 61.9
RcHm_v2.0_Chr2g0117041 Rosa chinensis HOM05D006130 ORTHO05D007491 1.3e-133 480.3 367 64.3
FAN19G1269 Fragaria x ananassa HOM05D006130 ORTHO05D007491 3.3e-132 475.7 380 61.1
FAN23G0816 Fragaria x ananassa HOM05D006130 ORTHO05D007491 5.6e-132 474.9 380 61.1
Thecc.01G113900 Theobroma cacao HOM05D006130 ORTHO05D007491 1.4e-130 470.3 380 60.5
Cpa.g.sc191.11 Carica papaya HOM05D006130 ORTHO05D007491 1.8e-130 469.9 378 60.1
Gorai.007G244700 Gossypium raimondii HOM05D006130 ORTHO05D007491 9.0e-130 467.6 384 61.2
Duzib264G0573 Durio zibethinus HOM05D006130 ORTHO05D007491 7.6e-129 464.5 379 60.2
QL06p031976 Quercus lobata HOM05D006130 ORTHO05D007491 2.2e-128 463.0 380 60.8
Gohir.D11G231600 Gossypium hirsutum HOM05D006130 ORTHO05D007491 3.8e-128 462.2 384 60.7
Gohir.A11G197900 Gossypium hirsutum HOM05D006130 ORTHO05D007491 8.4e-128 461.1 384 60.9
FAN26G2148 Fragaria x ananassa HOM05D006130 ORTHO05D007491 2.4e-127 459.5 380 60.5
MD15G1331600 Malus domestica HOM05D006130 ORTHO05D007491 9.3e-127 457.6 374 60.4
CiPaw.04G091300 Carya illinoinensis HOM05D006130 ORTHO05D007491 6.0e-126 454.9 383 59.0
Dinv42687 Davidia involucrata HOM05D006130 ORTHO05D007491 8.7e-125 451.1 375 60.0
Dinv19481 Davidia involucrata HOM05D006130 ORTHO05D007491 6.9e-122 441.4 375 58.4
Prupe.6G171600 Prunus persica HOM05D006130 ORTHO05D007491 1.2e-118 430.6 379 57.5
CsaV3_6G002440 Cucumis sativus L. HOM05D006130 ORTHO05D007491 7.9e-118 427.9 380 56.8
MELO3C025043.2 Cucumis melo HOM05D006130 ORTHO05D007491 3.9e-117 425.6 381 56.7
Duzib147G1554 Durio zibethinus HOM05D006130 ORTHO05D007491 1.1e-116 424.1 341 60.7
Eucgr.H04843 Eucalyptus grandis HOM05D006130 ORTHO05D007491 9.7e-116 421.0 372 56.2
Rhsim08G0006100 Rhododendron simsii HOM05D006130 ORTHO05D007491 2.2e-115 419.9 375 57.3
CANSAT80G2857 Cannabis sativa HOM05D006130 ORTHO05D007491 1.4e-114 417.2 379 55.7
Nn5g28889 Nelumbo nucifera HOM05D006130 ORTHO05D007491 1.5e-113 413.7 400 52.8
Sed0017229 Sechium edule HOM05D006130 ORTHO05D007491 1.5e-113 413.7 379 55.1
TWI74G0604 Tripterygium wilfordii HOM05D006130 ORTHO05D007491 3.4e-113 412.5 379 55.7
Oeu028522.1 Olea europaea HOM05D006130 ORTHO05D007491 1.9e-111 406.8 372 54.6
ClCG11G005560 Citrullus lanatus HOM05D006130 ORTHO05D007491 1.2e-110 404.1 384 55.2
GSVIVG01022236001 Vitis vinifera HOM05D006130 ORTHO05D007491 4.6e-110 402.1 381 54.3
MBI05_g29098_MAGBIO Magnolia biondii HOM05D006130 ORTHO05D007491 1.4e-109 400.6 388 51.0
Lj2C566T4 Lonicera japonica HOM05D006130 ORTHO05D007491 2.0e-105 386.7 367 55.0
EL10Ac6g14758 Beta vulgaris HOM05D006130 ORTHO05D007491 1.3e-104 384.0 380 53.2
THA.LOC104818474 Tarenaya hassleriana HOM05D006130 ORTHO05D007491 2.2e-104 383.3 385 53.8
PGR102G0730 Punica granatum HOM05D006130 ORTHO05D007491 2.9e-104 382.9 390 52.1
FvH4_1g22740 Fragaria vesca HOM05D006130 ORTHO05D007491 5.0e-104 382.1 322 58.7
Eucgr.H04852 Eucalyptus grandis HOM05D006130 ORTHO05D007491 8.5e-104 381.3 365 52.6
Lalb_Chr11g0068091 Lupinus albus HOM05D006130 ORTHO05D007491 2.5e-103 379.8 383 52.2
Cc07_g16320 Coffea canephora HOM05D006130 ORTHO05D007491 1.6e-102 377.1 374 50.8
CAN.G347.1 Capsicum annuum HOM05D006130 ORTHO05D007491 1.0e-101 374.4 370 51.6
Peaxi162Scf00106g00208 Petunia axillaris HOM05D006130 ORTHO05D007491 1.8e-101 373.6 364 52.7
Aqoxy7G04042 Aquilegia oxysepala HOM05D006130 ORTHO05D007491 1.5e-100 370.5 377 50.4
PGSC0003DMG400031208 Solanum tuberosum HOM05D006130 ORTHO05D007491 5.7e-100 368.6 376 50.5
Nitab4.5_0015691g0010 Nicotiana tabacum HOM05D006130 ORTHO05D007491 1.7e-99 367.1 374 52.9
MSTRG.15753 Avicennia marina HOM05D006130 ORTHO05D007491 3.7e-99 365.9 371 51.5
Solyc04g051780.3 Solanum lycopersicum HOM05D006130 ORTHO05D007491 4.1e-98 362.5 374 50.3
ECA238G3253 Erigeron canadensis HOM05D006130 ORTHO05D007491 7.0e-98 361.7 366 52.7
Sopen04g023130 Solanum pennellii HOM05D006130 ORTHO05D007491 3.5e-97 359.4 365 50.4
PSO210G3121 Papaver somniferum HOM05D006130 ORTHO05D007491 1.0e-96 357.8 382 47.6
AUR62016283 Chenopodium quinoa HOM05D006130 ORTHO05D007491 2.2e-96 356.7 385 49.1
Lj1g0022742 Lotus japonicus HOM05D006130 ORTHO05D007491 2.9e-96 356.3 390 50.5
vmacro18637 Vaccinium macrocarpon HOM05D006130 ORTHO05D007491 5.0e-96 355.5 351 52.7
Nitab4.5_0004840g0040 Nicotiana tabacum HOM05D006130 ORTHO05D007491 8.5e-96 354.8 373 51.7
HanXRQChr14g0445741 Helianthus annuus HOM05D006130 ORTHO05D007491 1.1e-95 354.4 359 51.3
Migut.L00069 Erythranthe guttata HOM05D006130 ORTHO05D007491 4.2e-95 352.4 368 51.1
Thhalv10004393m.g Eutrema salsugineum HOM05D006130 ORTHO05D007491 3.6e-94 349.4 392 48.0
TPR.G23729 Trifolium pratense HOM05D006130 ORTHO05D007491 6.1e-94 348.6 391 49.1
DCAR_001374 Daucus carota HOM05D006130 ORTHO05D007491 8.0e-94 348.2 414 44.9
PSO170G1695 Papaver somniferum HOM05D006130 ORTHO05D007491 1.0e-93 347.8 384 46.4
Phvul.009G139000 Phaseolus vulgaris HOM05D006130 ORTHO05D007491 1.8e-93 347.1 395 49.1
Eucgr.H04859 Eucalyptus grandis HOM05D006130 ORTHO05D007491 5.2e-93 345.5 365 49.6
Hund03536 Selenicereus undatus HOM05D006130 ORTHO05D007491 1.5e-92 344.0 387 47.0
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 2.6e-92 343.2 366 48.4
Glyma.04G218800 Glycine max HOM05D006130 ORTHO05D007491 3.3e-92 342.8 377 50.4
Ca_16897_v3 Cicer arietinum L. HOM05D006130 ORTHO05D007491 4.4e-92 342.4 392 48.7
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 7.4e-92 341.7 364 50.5
Lsat_1_v5_gn_2_67140 Lactuca sativa HOM05D006130 ORTHO05D007491 7.4e-92 341.7 366 48.1
AUR62003302 Chenopodium quinoa HOM05D006130 ORTHO05D007491 2.8e-91 339.7 386 47.9
CDE09G1360 Ceratophyllum demersum HOM05D006130 ORTHO05D007491 3.7e-91 339.3 390 45.6
SalBow5G2487 Salvia bowleyana HOM05D006130 ORTHO05D007491 1.6e-89 334.0 371 49.9
HPP92_016462 Vanilla planifolia HOM05D006130 ORTHO05D007491 7.7e-89 331.6 363 45.7
Sp2g27910 Schrenkiella parvula HOM05D006130 ORTHO05D007491 1.0e-88 331.3 382 46.9
Psat5g066000 Pisum sativum HOM05D006130 ORTHO05D007491 2.2e-88 330.1 391 46.5
CARHR278840 Cardamine hirsuta HOM05D006130 ORTHO05D007491 2.9e-88 329.7 377 48.0
AL8G42310 Arabidopsis lyrata HOM05D006130 ORTHO05D007491 3.8e-88 329.3 380 46.1
VMungo1309G1738 Vigna mungo HOM05D006130 ORTHO05D007491 5.0e-88 328.9 357 49.9
HPP92_027147 Vanilla planifolia HOM05D006130 ORTHO05D007491 1.1e-87 327.8 356 46.6
Medtr3g095020 Medicago truncatula HOM05D006130 ORTHO05D007491 2.5e-87 326.6 390 46.7
C03p61330 Brassica napus HOM05D006130 ORTHO05D007491 9.4e-87 324.7 380 46.1
Carub.0008s2566 Capsella rubella HOM05D006130 ORTHO05D007491 1.2e-86 324.3 377 46.4
ATR0665G503 Amborella trichopoda HOM05D006130 ORTHO05D007491 1.8e-85 320.5 388 43.8
arahy.Tifrunner.gnm1.ann1.JIC903 Arachis hypogaea HOM05D006130 ORTHO05D007491 1.5e-84 317.4 381 45.9
Os04g0640800 Oryza sativa ssp. japonica HOM05D006130 ORTHO05D007491 2.6e-84 316.6 364 46.2
SEGI_25559 Sequoiadendron giganteum HOM05D006130 ORTHO05D007491 2.6e-84 316.6 392 42.9
Eucgr.H04856 Eucalyptus grandis HOM05D006130 ORTHO05D007491 7.5e-84 315.1 372 46.5
BcaC01g02716 Brassica carinata HOM05D006130 ORTHO05D007491 9.7e-84 314.7 387 45.0
TAR628G0645 Trochodendron aralioides HOM05D006130 ORTHO05D007491 1.4e-82 310.8 281 56.9
Zm00001eb431860 Zea mays HOM05D006130 ORTHO05D007491 1.8e-82 310.5 370 43.8
arahy.Tifrunner.gnm1.ann1.S5QZ0Z Arachis hypogaea HOM05D006130 ORTHO05D007491 2.4e-82 310.1 370 45.4
Hma1.2p1_0375F.1_g138770 Hydrangea macrophylla HOM05D006130 ORTHO05D007491 5.9e-81 305.4 307 53.7
GSVIVG01022231001 Vitis vinifera HOM05D006130 ORTHO05D007491 7.7e-81 305.1 382 44.5
A06p31630 Brassica napus HOM05D006130 ORTHO05D007491 2.9e-80 303.1 381 44.1
BraA06t26099Z Brassica rapa HOM05D006130 ORTHO05D007491 2.5e-79 300.1 376 45.5
BolC3t18393H Brassica oleracea HOM05D006130 ORTHO05D007491 5.5e-79 298.9 377 44.3
SGA_v2.0_scaffold47G17703 Striga asiatica HOM05D006130 ORTHO05D007491 1.2e-78 297.7 384 45.1
BcaB02g09834 Brassica carinata HOM05D006130 ORTHO05D007491 4.7e-78 295.8 383 43.9
SMO358G0378 Selaginella moellendorffii HOM05D006130 ORTHO05D007491 6.1e-78 295.4 397 41.1
Ah.14g080600 Amaranthus hybridus HOM05D006130 ORTHO05D007491 8.8e-77 291.6 366 45.6
Eucgr.H04846 Eucalyptus grandis HOM05D006130 ORTHO05D007491 8.3e-75 285.0 337 46.0
unitig_62.g23431 Utricularia gibba HOM05D006130 ORTHO05D007491 2.5e-71 273.5 360 43.9
Actinidia12211 Actinidia chinensis HOM05D006130 ORTHO05D007491 2.3e-69 266.9 260 54.2
Ah.03g141370 Amaranthus hybridus HOM05D006130 ORTHO05D007491 7.8e-65 251.9 388 41.2
Pp3c16_16240 Physcomitrium patens HOM05D006130 ORTHO05D007491 3.9e-64 249.6 421 36.3
COL.COLO4_11003 Corchorus olitorius HOM05D006130 ORTHO05D007491 1.1e-63 248.1 377 37.9
Mapoly0014s0114 Marchantia polymorpha HOM05D006130 ORTHO05D007491 2.3e-61 240.4 405 34.8
Sc03g0004370 Simmondsia chinensis HOM05D006130 ORTHO05D007491 6.8e-61 238.8 277 48.0
CSS0050489 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.0e-58 228.8 173 61.3
Eucgr.H04861 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.5e-55 221.1 181 59.7
Glyma.06G147000 Glycine max HOM05D006130 ORTHO05D007491 1.9e-55 220.7 219 52.5
AT5G64830 Arabidopsis thaliana HOM05D006130 ORTHO05D007491 6.0e-49 199.1 286 43.4
CBR_g30690 Chara braunii HOM05D006130 ORTHO05D007491 6.6e-48 195.7 473 31.3
AagrBONN_evm.TU.Sc2ySwM_228.1847 Anthoceros agrestis HOM05D006130 ORTHO05D007491 4.3e-31 139.8 136 47.1
SGA_v2.0_scaffold34G13625 Striga asiatica HOM05D006130 ORTHO05D007491 3.6e-22 110.2 89 53.9
MCO11G927 Micromonas commoda HOM05D006130 ORTHO05D007491 2.4e-21 107.5 446 26.5
AagrBONN_evm.TU.Sc2ySwM_228.1848 Anthoceros agrestis HOM05D006130 ORTHO05D007491 6.9e-21 105.9 87 55.2
Actinidia35264 Actinidia chinensis HOM05D006130 ORTHO05D007491 5.8e-20 102.8 89 53.9
Cre14.g608500 Chlamydomonas reinhardtii HOM05D006130 ORTHO05D007491 3.4e-12 77.0 126 34.1
Cre03.g149500 Chlamydomonas reinhardtii HOM05D005189 ORTHO05D006093 2.2e-11 74.3 119 37.0
SGA_v2.0_scaffold32G12965 Striga asiatica HOM05D006130 ORTHO05D007491 2.2e-11 74.3 80 52.5
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 2.9e-11 73.9 347 24.2
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 3.8e-11 73.6 349 22.6
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 3.8e-11 73.6 353 23.8
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 4.2e-10 70.1 354 22.3
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 4.2e-10 70.1 343 23.3
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 7.1e-10 69.3 355 22.5
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 1.6e-09 68.2 373 23.1
AUR62024701 Chenopodium quinoa HOM05D005189 ORTHO05D006093 1.6e-09 68.2 348 22.7
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 6.0e-09 66.2 346 22.5
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 6.0e-09 66.2 413 24.5
PRCOL_00001898 Prasinoderma coloniale HOM05D006130 ORTHO05D007491 6.0e-09 66.2 165 30.3
EL10Ac2g03409 Beta vulgaris HOM05D005189 ORTHO05D006093 7.9e-09 65.9 353 24.4
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 7.9e-09 65.9 346 22.5
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 1.3e-08 65.1 352 22.4
Gorai.007G180000 Gossypium raimondii HOM05D005189 ORTHO05D006093 1.8e-08 64.7 348 23.9
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 1.8e-08 64.7 351 23.1
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 2.3e-08 64.3 371 22.9
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 2.3e-08 64.3 353 22.4
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 3.9e-08 63.5 353 21.5
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 3.9e-08 63.5 366 22.7
Zm00001eb396540 Zea mays HOM05D005189 ORTHO05D006093 3.9e-08 63.5 347 22.5
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 6.7e-08 62.8 119 33.6
CiPaw.01G112900 Carya illinoinensis HOM05D005189 ORTHO05D006093 6.7e-08 62.8 117 29.9
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 8.7e-08 62.4 350 22.3
TWI23G0603 Tripterygium wilfordii HOM05D005189 ORTHO05D006093 8.7e-08 62.4 363 22.6
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 1.1e-07 62.0 110 31.8
PGR044G0984 Punica granatum HOM05D005189 ORTHO05D006093 1.5e-07 61.6 353 24.1
PGR047G0002 Punica granatum HOM05D005189 ORTHO05D006093 1.5e-07 61.6 353 24.1
Zm00001eb367030 Zea mays HOM05D006130 ORTHO05D007491 1.9e-07 61.2 42 61.9
Mapoly0037s0138 Marchantia polymorpha HOM05D005189 ORTHO05D006093 2.5e-07 60.8 375 22.9
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 3.3e-07 60.5 119 31.9
AUR62011856 Chenopodium quinoa HOM05D005189 ORTHO05D006093 3.3e-07 60.5 354 22.9
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 3.3e-07 60.5 345 22.3
HanXRQChr08g0218711 Helianthus annuus HOM05D006130 ORTHO05D007491 3.3e-07 60.5 53 47.2
Cc01_g21150 Coffea canephora HOM05D005189 ORTHO05D006093 4.3e-07 60.1 99 34.3
Lsat_1_v5_gn_8_164980 Lactuca sativa HOM05D005189 ORTHO05D006093 4.3e-07 60.1 355 20.6
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 4.3e-07 60.1 117 27.4
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 5.7e-07 59.7 358 24.3
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 5.7e-07 59.7 343 23.3
DCAR_022674 Daucus carota HOM05D005189 ORTHO05D006093 5.7e-07 59.7 335 23.3
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 7.4e-07 59.3 346 23.7
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 7.4e-07 59.3 99 30.3
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 9.6e-07 58.9 363 24.8
ECA236G2822 Erigeron canadensis HOM05D000141 ORTHO05D000780 9.6e-07 58.9 342 22.2
Oeu008336.1 Olea europaea HOM05D005189 ORTHO05D006093 9.6e-07 58.9 339 22.4
Oeu028521.1 Olea europaea HOM05D006130 ORTHO05D007491 9.6e-07 58.9 31 74.2
Aqoxy22s002 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 1.3e-06 58.5 165 28.5
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 1.3e-06 58.5 345 22.6
TAR381G0823 Trochodendron aralioides HOM05D006130 ORTHO05D007491 1.3e-06 58.5 68 44.1
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 2.1e-06 57.8 355 23.4
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 2.1e-06 57.8 150 28.0
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 2.1e-06 57.8 370 22.2
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 2.1e-06 57.8 119 31.1
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 2.8e-06 57.4 344 23.0
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 2.8e-06 57.4 348 22.1
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 2.8e-06 57.4 347 22.5
Zm00001eb013970 Zea mays HOM05D005189 ORTHO05D006093 2.8e-06 57.4 339 23.6
Oeu021746.1 Olea europaea HOM05D005189 ORTHO05D006093 4.8e-06 56.6 158 25.9
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 8.2e-06 55.8 351 21.9


User provided reference genes

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