Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 1.6e-274 948.7 453 100.0
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.4e-254 881.7 450 91.6
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 2.1e-250 868.6 450 90.0
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 7.9e-250 866.7 453 89.2
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.0e-249 866.3 450 89.6
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 5.1e-249 864.0 453 89.0
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.5e-248 862.4 453 87.4
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.4e-248 860.9 453 88.3
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 5.7e-248 860.5 453 88.3
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 9.7e-248 859.8 453 87.9
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.2e-247 858.6 450 89.6
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 2.8e-247 858.2 445 90.1
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.8e-247 858.2 451 88.5
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 1.1e-246 856.3 448 88.6
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 1.8e-246 855.5 450 88.9
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 3.1e-246 854.7 449 89.1
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 6.9e-246 853.6 444 89.9
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 9.1e-246 853.2 450 87.8
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 9.1e-246 853.2 444 89.9
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 1.2e-245 852.8 453 88.1
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.5e-245 852.4 463 86.6
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 3.4e-245 851.3 453 88.1
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 1.0e-244 849.7 450 87.8
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 2.9e-244 848.2 445 89.0
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.0e-244 847.4 448 87.7
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 1.4e-243 845.9 453 86.8
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 2.5e-243 845.1 453 85.9
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 5.5e-243 844.0 450 87.6
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 5.5e-243 844.0 448 87.5
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 5.5e-243 844.0 453 86.1
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 5.5e-243 844.0 449 87.3
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 9.4e-243 843.2 448 87.5
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 9.4e-243 843.2 447 87.2
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 2.1e-242 842.0 448 87.1
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 4.7e-242 840.9 450 86.9
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 4.7e-242 840.9 447 88.6
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 6.1e-242 840.5 453 87.0
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 6.1e-242 840.5 453 86.3
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 1.0e-241 839.7 447 87.5
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 1.4e-241 839.3 448 87.7
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 1.4e-241 839.3 448 87.7
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 1.8e-241 839.0 448 87.5
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 2.3e-241 838.6 449 86.2
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 3.0e-241 838.2 444 88.3
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 1.1e-240 836.3 444 88.3
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 7.4e-240 833.6 443 87.4
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 7.4e-240 833.6 453 85.9
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 7.4e-240 833.6 445 87.0
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 7.4e-240 833.6 453 85.4
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 9.7e-240 833.2 447 87.5
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 3.7e-239 831.2 450 85.1
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 3.7e-239 831.2 499 80.2
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 6.3e-239 830.5 445 87.2
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 8.2e-239 830.1 440 87.5
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.4e-238 829.3 445 87.4
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 2.4e-238 828.6 449 86.2
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 3.1e-238 828.2 452 83.8
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 4.1e-238 827.8 452 84.1
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 4.1e-238 827.8 453 85.7
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 7.0e-238 827.0 445 86.3
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 7.0e-238 827.0 447 86.4
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 7.0e-238 827.0 453 85.7
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 9.1e-238 826.6 453 85.9
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 1.2e-237 826.2 453 83.9
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 1.2e-237 826.2 453 83.9
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.6e-237 825.9 432 87.7
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 2.6e-237 825.1 447 85.7
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 2.6e-237 825.1 452 83.8
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 3.5e-237 824.7 447 85.2
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 3.5e-237 824.7 447 85.7
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 3.5e-237 824.7 453 85.7
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 5.9e-237 823.9 453 83.7
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 5.9e-237 823.9 450 84.2
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 1.3e-236 822.8 450 85.1
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 2.9e-236 821.6 453 83.7
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 2.9e-236 821.6 445 87.0
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 3.2e-235 818.1 450 83.6
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 5.5e-235 817.4 449 84.4
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 7.2e-235 817.0 453 83.2
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 9.4e-235 816.6 448 84.6
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 8.0e-234 813.5 453 83.2
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 8.0e-234 813.5 455 83.7
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 8.0e-234 813.5 483 79.7
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.0e-233 813.1 453 83.0
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 1.0e-233 813.1 469 82.1
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.8e-233 812.4 433 86.6
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 5.2e-233 810.8 453 82.8
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 5.2e-233 810.8 453 83.2
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 6.7e-233 810.4 453 82.6
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 8.8e-233 810.1 448 83.5
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 2.6e-232 808.5 453 82.8
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 3.3e-232 808.1 453 82.8
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 3.3e-232 808.1 453 82.8
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 1.7e-231 805.8 453 82.3
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 2.8e-231 805.1 453 82.3
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 2.8e-231 805.1 445 85.6
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 3.7e-231 804.7 443 84.9
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 1.6e-229 799.3 447 84.1
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 2.0e-229 798.9 447 85.0
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 1.2e-226 789.6 447 83.2
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 8.0e-226 786.9 452 81.2
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 1.0e-225 786.6 445 80.2
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 3.0e-225 785.0 448 83.5
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 4.0e-225 784.6 449 79.1
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 9.8e-224 780.0 446 81.4
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 4.1e-222 774.6 453 82.1
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 5.4e-222 774.2 412 87.4
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 7.7e-221 770.4 452 79.9
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 2.5e-211 738.8 380 90.5
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 3.0e-209 731.9 448 76.8
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.3e-207 726.5 446 76.2
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 8.3e-207 723.8 457 76.8
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.0e-205 719.2 443 78.1
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 4.3e-203 711.4 449 73.9
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.3e-199 699.9 388 82.5
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.9e-198 696.0 459 73.4
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.2e-194 683.3 377 83.0
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.1e-182 643.7 443 70.7
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.7e-181 639.0 331 90.9
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 4.7e-178 628.2 452 70.1
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 9.3e-166 587.4 434 68.4
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 8.1e-162 574.3 297 90.6
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 4.5e-160 568.5 450 64.4
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.6e-157 560.1 295 88.8
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 1.2e-152 543.9 316 76.9
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 4.1e-145 518.8 288 83.0
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 2.2e-130 469.9 444 56.8
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.9e-126 456.8 379 59.1
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.3e-122 444.1 295 70.2
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.7e-109 399.8 280 67.5
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 2.9e-90 336.7 194 78.4
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 2.1e-80 303.9 162 85.8
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.6e-72 276.2 262 52.7
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 6.6e-71 272.3 140 90.7
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 2.5e-70 270.4 153 78.4
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.1e-68 265.0 149 77.9
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 4.4e-67 259.6 153 73.9
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 7.6e-67 258.8 198 66.2
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.9e-65 254.2 147 80.3
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 3.2e-65 253.4 147 78.2
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.6e-61 241.1 194 59.8
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 1.1e-52 211.8 135 75.6
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 3.1e-52 210.3 138 72.5
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 5.4e-49 199.5 110 86.4
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 4.9e-42 176.4 117 70.1
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 1.5e-38 164.9 137 57.7
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 5.1e-23 113.2 55 89.1
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.7e-21 108.2 73 68.5
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 6.3e-21 106.3 69 69.6
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.1e-20 105.5 67 74.6
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 5.9e-19 99.8 66 68.2
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.0e-18 99.0 68 64.7
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 7.2e-17 92.8 75 58.7
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 7.9e-16 89.4 68 61.8
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 1.0e-15 89.0 98 44.9
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 5.7e-14 83.2 49 75.5
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 9.7e-14 82.4 67 55.2
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 7.0e-12 76.3 67 55.2
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.5e-11 75.1 46 69.6
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 7.7e-11 72.8 41 75.6
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 5.5e-09 66.6 159 30.8
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 7.2e-09 66.2 36 80.6


User provided reference genes

Program Settings