Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1965.7 988 100.0
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1812.0 988 90.2
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1785.4 989 89.0
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1785.4 985 89.5
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1781.5 988 88.6
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1776.9 989 89.2
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1773.1 988 88.4
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1770.0 988 88.0
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1767.7 988 88.3
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1767.7 986 88.7
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1765.4 988 88.4
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1764.2 988 87.4
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1759.6 988 87.6
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1756.1 988 87.3
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1755.7 988 87.0
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1755.7 989 87.7
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1753.8 988 87.0
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1753.8 989 87.0
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1746.1 985 87.2
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1735.3 989 86.3
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1732.2 988 86.1
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1731.8 989 86.0
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1731.8 988 86.2
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1730.7 988 85.8
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1729.5 1083 80.2
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1728.8 989 85.8
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1725.7 989 85.7
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1724.1 998 85.3
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1724.1 989 85.5
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1719.9 987 85.5
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1718.4 983 86.3
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1717.6 1015 84.5
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1713.4 1012 83.8
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1713.0 1012 83.7
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1710.7 985 85.0
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1709.5 990 84.6
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1709.1 989 84.4
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1708.7 989 84.5
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1708.7 990 85.3
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1707.2 991 84.4
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1699.1 985 84.2
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1698.7 989 84.1
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1698.3 990 83.9
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1698.3 997 84.5
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1697.2 1005 84.0
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1696.8 989 84.9
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1696.4 989 86.1
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1694.9 1001 83.1
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1694.9 1012 82.8
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1694.1 989 83.8
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1693.3 991 83.9
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1689.1 988 82.9
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1687.5 995 83.3
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1684.8 990 84.4
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1683.7 1026 81.9
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1682.5 1077 79.4
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1682.2 989 83.4
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1682.2 988 82.7
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1681.4 986 83.9
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1680.6 994 83.2
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1678.7 990 82.9
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1677.5 1004 82.3
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1674.8 996 82.8
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1671.0 991 83.2
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1669.1 1004 82.3
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1669.1 988 83.2
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1668.7 989 82.7
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1666.4 988 84.6
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1664.0 997 82.8
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1660.6 1006 81.7
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1659.0 989 82.8
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1659.0 991 83.1
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1652.1 993 82.3
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1647.1 988 82.8
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1629.8 932 85.5
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1627.5 1026 80.2
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1626.7 989 81.7
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1625.9 1039 78.5
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1622.1 989 81.1
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1621.3 986 80.7
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1617.4 1016 79.8
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1611.3 989 80.8
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1605.1 937 84.5
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1602.0 987 80.6
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1587.0 989 79.5
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1573.1 928 84.6
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1559.3 994 77.4
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1534.6 989 78.4
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1515.7 989 76.9
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1498.8 896 81.8
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1493.8 846 86.8
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1459.9 985 73.8
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1439.5 817 87.3
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1415.6 995 72.1
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1412.5 785 88.7
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1389.0 793 87.1
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1372.5 771 87.9
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1361.7 792 84.8
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1355.5 860 78.8
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1351.3 995 71.7
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1342.4 793 84.5
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1331.6 952 71.3
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1319.3 759 85.8
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1292.7 763 83.7
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1228.4 782 79.8
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1192.2 761 79.8
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1189.1 991 60.5
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1184.5 988 60.8
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 4.5e-306 1054.7 643 83.4
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 1.9e-296 1022.7 981 52.4
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 9.4e-296 1020.4 611 82.0
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 9.7e-293 1010.4 790 63.4
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 2.0e-290 1002.7 664 75.8
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 3.4e-290 1001.9 558 88.5
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.2e-260 902.9 574 78.2
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 9.1e-259 897.5 519 85.7
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 1.2e-255 887.1 611 71.4
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 2.7e-250 869.4 517 83.4
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 2.0e-213 746.9 418 86.1
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 6.1e-178 629.0 336 91.1
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 8.2e-159 565.5 336 82.1
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.7e-146 523.9 282 89.0
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 2.3e-124 451.1 1084 31.0
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 6.4e-119 433.0 249 85.5
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 4.1e-110 403.7 230 81.3
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 4.7e-106 390.2 231 78.8
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 2.4e-105 387.9 1014 28.8
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 2.2e-103 381.3 1266 26.9
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 2.1e-101 374.8 204 88.2
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 2.5e-99 367.9 268 71.6
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 3.6e-98 364.0 207 83.6
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 2.7e-93 347.8 231 72.3
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 6.0e-85 320.1 178 84.8
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 2.4e-81 308.1 198 76.3
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 2.9e-79 301.2 305 53.1
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 4.8e-74 283.9 211 68.2
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 2.0e-72 278.5 441 39.2
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 1.1e-70 272.7 153 84.3
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 7.2e-62 243.4 153 77.1
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 2.3e-60 238.4 127 88.2
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 6.7e-52 210.3 135 71.1
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 8.5e-47 193.4 120 75.8
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 7.5e-43 180.3 163 61.3
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 9.1e-41 173.3 119 70.6
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.6e-40 172.6 125 70.4
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.7e-39 169.1 174 58.6
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 9.8e-35 153.3 88 80.7
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.3e-34 152.9 145 57.9
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.1e-30 139.8 73 95.9
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 7.2e-30 137.1 99 66.7
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 2.0e-27 129.0 131 58.8
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 3.4e-27 128.3 127 59.1
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 6.3e-26 124.0 81 67.9
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 3.1e-25 121.7 75 77.3
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 1.3e-23 116.3 75 77.3
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.5e-22 112.1 92 63.0
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 4.3e-22 111.3 80 78.8
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.3e-22 111.3 91 63.7
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 2.2e-18 99.0 52 86.5
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 1.1e-17 96.7 87 54.0
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.2e-17 95.1 113 45.1
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.7e-16 92.0 54 79.6
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 7.8e-16 90.5 100 51.0
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 5.0e-15 87.8 160 38.1
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 6.2e-13 80.9 227 25.6
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.5e-11 76.3 48 62.5
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 5.0e-07 61.2 45 62.2
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 1.5e-06 59.7 47 63.8


User provided reference genes

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