Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 8.9e-210 733.4 383 100.0
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 1.3e-144 516.9 383 72.8
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 6.9e-130 468.0 393 66.4
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 2.8e-123 446.0 388 64.9
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 2.2e-104 383.3 381 60.1
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.5e-103 380.6 396 57.3
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.1e-95 354.4 389 53.2
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 1.9e-95 353.6 403 51.9
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.3e-95 352.8 387 53.0
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 5.6e-95 352.1 384 53.9
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 9.5e-95 351.3 387 52.7
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 2.8e-94 349.7 389 53.5
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 1.2e-92 344.4 394 52.3
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 9.8e-92 341.3 385 54.0
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 2.9e-91 339.7 376 53.2
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 3.0e-88 329.7 416 50.2
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 6.6e-88 328.6 404 49.5
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 2.5e-87 326.6 386 52.1
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 2.8e-86 323.2 411 49.9
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 2.8e-86 323.2 385 51.2
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 2.8e-86 323.2 383 52.7
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.2e-84 317.8 393 50.1
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 2.6e-84 316.6 388 49.2
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 7.5e-84 315.1 417 46.5
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 1.7e-83 313.9 399 49.9
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 1.7e-83 313.9 377 51.2
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.7e-83 312.8 381 50.4
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 6.4e-83 312.0 385 50.1
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 1.1e-82 311.2 396 51.0
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.1e-82 311.2 390 49.0
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 3.2e-82 309.7 381 49.6
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 9.2e-82 308.1 381 49.6
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 2.7e-81 306.6 385 48.1
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 6.0e-81 305.4 377 49.3
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 1.1e-79 301.2 386 46.6
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.5e-79 300.8 383 50.1
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 5.6e-79 298.9 388 49.0
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 5.6e-79 298.9 392 47.7
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 9.5e-79 298.1 425 47.5
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.2e-78 297.7 391 47.8
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 3.6e-78 296.2 377 46.9
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 1.1e-77 294.7 388 46.1
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 6.8e-77 292.0 398 45.7
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.4e-76 289.7 386 46.9
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 1.9e-74 283.9 386 45.6
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 9.2e-74 281.6 397 45.1
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 9.2e-74 281.6 410 43.9
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.2e-73 281.2 377 48.5
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 1.0e-72 278.1 412 43.7
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.7e-72 277.3 396 44.7
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 2.3e-72 276.9 400 46.5
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 2.3e-72 276.9 406 44.6
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 3.0e-72 276.6 422 45.7
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 6.6e-72 275.4 388 44.1
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 1.9e-71 273.9 391 46.3
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.5e-71 273.5 385 43.4
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 3.3e-71 273.1 389 48.3
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 7.3e-71 271.9 376 47.9
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 2.8e-70 270.0 388 45.1
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 3.6e-70 269.6 411 43.1
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 8.1e-70 268.5 406 46.1
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 1.4e-69 267.7 396 43.7
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 1.4e-69 267.7 406 44.1
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 4.0e-69 266.2 385 46.0
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 4.0e-69 266.2 410 42.4
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 1.5e-68 264.2 389 44.0
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 2.0e-68 263.8 332 48.8
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 2.6e-68 263.5 446 42.4
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 3.4e-68 263.1 427 43.6
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 3.4e-68 263.1 413 45.8
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 5.8e-68 262.3 367 43.9
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 9.9e-68 261.5 378 46.3
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 1.3e-67 261.2 377 46.7
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 4.9e-67 259.2 438 43.4
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.1e-66 258.1 413 44.8
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 1.4e-66 257.7 392 46.2
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 9.2e-66 255.0 382 44.0
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 9.2e-66 255.0 371 47.4
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 7.8e-65 251.9 388 43.8
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 6.6e-64 248.8 325 48.9
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 6.6e-64 248.8 387 43.2
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 4.3e-63 246.1 387 42.9
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 1.2e-62 244.6 380 43.2
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 3.6e-62 243.0 402 44.3
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 1.1e-61 241.5 380 43.2
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 2.4e-61 240.4 420 41.4
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 4.0e-61 239.6 323 46.7
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 4.0e-61 239.6 418 42.1
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 6.8e-61 238.8 396 42.2
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 6.8e-61 238.8 361 42.7
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 1.7e-59 234.2 425 42.8
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 4.9e-59 232.6 327 46.2
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 7.1e-58 228.8 413 41.9
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 2.7e-57 226.9 419 42.7
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 5.1e-56 222.6 394 43.9
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 2.5e-55 220.3 419 41.5
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 4.3e-55 219.5 409 44.5
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 4.3e-55 219.5 409 44.5
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 2.8e-54 216.9 388 41.5
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 4.8e-54 216.1 375 41.3
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 6.2e-54 215.7 404 42.6
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.4e-53 214.5 393 41.5
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 3.1e-53 213.4 222 55.0
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 3.1e-53 213.4 401 43.6
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 9.0e-53 211.8 390 41.3
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 9.0e-53 211.8 390 41.3
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 1.2e-52 211.5 384 41.4
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 1.2e-52 211.5 384 41.4
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 1.2e-52 211.5 384 41.4
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 2.6e-52 210.3 416 37.0
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 3.4e-52 209.9 379 38.3
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.9e-51 206.8 420 38.6
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 2.9e-51 206.8 458 36.7
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 4.9e-51 206.1 336 43.5
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 6.4e-51 205.7 183 61.2
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 4.2e-50 203.0 353 41.9
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 5.4e-50 202.6 413 40.2
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.6e-49 201.1 365 42.5
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 6.0e-49 199.1 394 40.9
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 3.0e-48 196.8 410 38.8
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 3.3e-47 193.4 404 39.9
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 5.6e-47 192.6 389 39.6
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 5.6e-47 192.6 389 39.6
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 1.4e-45 188.0 389 39.3
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 6.9e-45 185.7 192 55.7
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 3.4e-44 183.3 384 37.0
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 3.8e-43 179.9 376 38.3
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 3.5e-41 173.3 270 44.4
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 4.6e-41 172.9 415 36.9
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 1.6e-38 164.5 269 43.1
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.8e-38 163.7 413 35.1
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 3.1e-37 160.2 350 37.4
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 5.3e-37 159.5 352 36.1
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.6e-36 157.1 248 45.2
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.9e-34 151.0 371 35.6
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 1.3e-32 144.8 374 34.8
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 9.7e-23 112.1 215 38.1
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.3e-22 111.7 212 38.2
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.4e-21 108.2 215 43.3
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 4.6e-17 93.2 336 29.2
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 2.2e-14 84.3 80 53.8
Psat2g009520 Pisum sativum HOM05D005109 ORTHO05D006084 4.5e-12 76.6 94 48.9
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 1.7e-11 74.7 154 37.7
Migut.M01016 Erythranthe guttata HOM05D008010 ORTHO05D010085 1.6e-09 68.2 259 27.4
Actinidia25795 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.1e-09 67.8 141 35.5
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 4.4e-07 60.1 45 68.9
Nn3g21124 Nelumbo nucifera HOM05D008010 ORTHO05D010085 1.7e-06 58.2 251 23.9
MELO3C012884.2 Cucumis melo HOM05D005109 ORTHO05D006084 6.3e-06 56.2 94 43.6


User provided reference genes

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