Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 0.0e+00 1259.2 622 100.0
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 8.2e-290 1000.0 622 78.1
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 2.6e-283 978.4 621 76.2
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 7.7e-280 966.8 622 77.2
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 1.6e-272 942.6 626 73.5
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 1.5e-270 936.0 623 73.5
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 4.7e-269 931.0 622 73.0
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 2.6e-267 925.2 624 71.5
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 9.8e-267 923.3 622 71.7
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 7.3e-262 907.1 628 72.1
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 4.7e-261 904.4 628 71.8
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 2.0e-256 889.0 623 70.5
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 7.3e-254 880.6 625 70.1
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 2.1e-253 879.0 624 69.6
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 6.2e-253 877.5 624 69.6
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 4.0e-252 874.8 626 69.6
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 5.2e-252 874.4 626 69.5
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 1.3e-250 869.8 626 68.8
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 6.4e-250 867.5 626 68.7
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 9.2e-249 863.6 622 67.7
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 3.0e-247 858.6 623 66.8
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 1.5e-246 856.3 605 69.6
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 7.3e-246 854.0 622 68.2
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 7.3e-246 854.0 622 68.0
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 1.8e-244 849.4 626 67.9
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 1.5e-243 846.3 623 67.6
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 4.4e-243 844.7 624 67.3
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 3.8e-242 841.6 625 67.4
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 4.9e-242 841.3 622 65.6
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 9.2e-241 837.0 623 66.1
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 1.2e-240 836.6 628 66.7
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 2.1e-240 835.9 624 67.1
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 3.5e-240 835.1 624 67.0
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 4.6e-240 834.7 623 65.7
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 3.9e-239 831.6 655 62.9
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 2.1e-237 825.9 623 64.8
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 4.7e-237 824.7 625 64.0
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 6.2e-237 824.3 622 65.8
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 1.8e-236 822.8 635 66.5
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 1.8e-236 822.8 627 65.9
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 2.4e-236 822.4 627 64.3
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 3.4e-235 818.5 625 64.6
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 1.3e-234 816.6 693 61.0
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 2.9e-234 815.5 621 64.4
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 3.8e-234 815.1 625 63.7
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 7.1e-233 810.8 622 64.5
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 1.2e-232 810.1 625 64.0
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 2.1e-232 809.3 622 64.8
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 2.1e-232 809.3 622 64.6
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 4.6e-232 808.1 624 65.5
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 6.0e-232 807.7 628 65.4
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 1.0e-231 807.0 622 63.7
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 3.9e-231 805.1 629 62.6
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 5.1e-231 804.7 621 63.3
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 2.5e-230 802.4 624 65.1
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 1.5e-227 793.1 622 64.1
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 2.0e-227 792.7 622 64.5
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 7.6e-227 790.8 621 63.0
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 1.7e-226 789.6 621 62.8
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 1.7e-226 789.6 621 63.0
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 2.2e-226 789.3 573 68.1
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 4.9e-226 788.1 621 62.6
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 6.4e-226 787.7 629 62.5
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 1.4e-225 786.6 626 63.6
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 2.4e-225 785.8 618 65.0
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 2.4e-225 785.8 622 63.3
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 3.2e-225 785.4 621 62.5
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 1.6e-224 783.1 622 62.5
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 6.0e-224 781.2 621 62.3
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 3.0e-223 778.9 622 62.9
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 8.7e-223 777.3 621 60.9
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 1.1e-222 776.9 622 63.2
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 1.5e-222 776.5 622 61.1
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 1.9e-222 776.2 685 59.1
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 3.3e-222 775.4 622 62.5
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 9.6e-222 773.9 622 62.5
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 3.8e-218 761.9 639 59.5
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 1.4e-217 760.0 634 61.2
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 2.3e-215 752.7 529 68.4
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 6.7e-215 751.1 622 60.0
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 3.3e-214 748.8 622 61.1
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 1.1e-212 743.8 623 60.8
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 7.6e-211 737.6 622 60.5
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 4.9e-210 734.9 660 59.7
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 8.4e-210 734.2 624 59.8
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 1.4e-209 733.4 626 61.0
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 1.9e-209 733.0 623 58.6
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 3.2e-209 732.3 622 59.5
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 2.7e-208 729.2 623 57.8
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 4.6e-208 728.4 586 63.0
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 5.1e-207 724.9 663 57.6
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 8.2e-205 717.6 633 57.3
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 8.2e-205 717.6 622 58.0
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 7.9e-200 701.0 623 56.8
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 1.1e-198 697.2 527 66.4
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 1.6e-192 676.8 622 55.0
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 1.1e-182 644.0 622 54.7
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 1.0e-178 630.9 625 56.5
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 3.0e-175 619.4 617 53.5
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.4e-172 609.8 669 49.5
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.4e-172 609.8 669 49.5
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 9.1e-172 607.8 665 49.6
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 2.2e-170 603.2 611 51.6
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 2.1e-168 596.7 629 50.2
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 3.1e-164 582.8 487 62.2
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.3e-154 550.8 631 48.7
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 1.4e-151 540.8 608 49.2
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 9.5e-145 518.1 645 45.0
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 2.3e-138 496.9 631 44.2
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 5.0e-138 495.7 387 62.8
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 2.8e-136 490.0 405 59.0
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 2.1e-123 447.2 581 42.3
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.2e-120 438.0 406 56.9
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.6e-115 419.5 409 53.8
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 2.6e-110 403.7 471 45.9
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 1.4e-84 318.2 716 32.0
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 1.3e-72 278.5 674 32.5
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 2.4e-71 274.2 412 39.6
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 3.2e-68 263.8 215 60.9
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 6.5e-61 239.6 271 46.5
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 5.7e-57 226.5 249 48.2
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 5.0e-53 213.4 164 67.1
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 4.7e-51 206.8 389 33.7
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 6.8e-50 203.0 130 73.8
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 4.5e-46 190.3 142 63.4
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 8.3e-40 169.5 123 71.5
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 4.7e-35 153.7 162 51.2
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 1.4e-34 152.1 103 71.8
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 5.2e-34 150.2 446 28.5
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.1e-31 142.5 95 69.5
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.0e-29 136.0 141 52.5
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 8.6e-29 132.9 158 42.4
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 3.2e-23 114.4 153 42.5
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 7.0e-23 113.2 235 34.5
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 5.1e-21 107.1 109 52.3
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 1.1e-18 99.4 76 64.5
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 1.8e-18 98.6 127 47.2
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 1.5e-17 95.5 68 60.3
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 7.5e-17 93.2 81 56.8
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 1.9e-15 88.6 169 36.7
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 2.4e-15 88.2 71 56.3
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 7.1e-15 86.7 84 52.4
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 1.7e-13 82.0 48 75.0
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 1.6e-11 75.5 54 59.3
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 2.1e-11 75.1 43 76.7
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 6.2e-11 73.6 65 55.4
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 9.9e-09 66.2 153 34.6
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 2.9e-08 64.7 51 58.8
Lsat_1_v5_gn_4_120120 Lactuca sativa HOM05D001824 ORTHO05D006578 8.4e-08 63.2 52 57.7
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 1.1e-07 62.8 40 67.5
Potri.010G096301 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.6e-06 58.9 33 81.8


User provided reference genes

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