Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 7.1e-56 220.3 108 100.0
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 4.9e-49 197.6 108 88.9
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 4.9e-49 197.6 108 88.9
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 4.9e-41 171.0 108 75.9
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 2.5e-40 168.7 108 75.9
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 1.2e-39 166.4 108 74.1
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 2.1e-39 165.6 108 73.1
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 7.9e-39 163.7 108 73.1
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 1.3e-38 162.9 108 69.4
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 5.1e-38 161.0 108 73.1
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 8.7e-38 160.2 108 70.4
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 8.7e-38 160.2 108 73.1
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 1.1e-37 159.8 108 69.4
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 2.5e-37 158.7 108 72.2
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 5.7e-37 157.5 108 68.5
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 9.7e-37 156.8 108 71.3
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 1.6e-36 156.0 108 71.3
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 6.3e-36 154.1 108 69.4
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 6.3e-36 154.1 87 83.9
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 8.2e-36 153.7 108 69.4
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 8.2e-36 153.7 108 69.4
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.4e-35 152.9 108 69.4
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.4e-35 152.9 108 69.4
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 1.4e-35 152.9 108 69.4
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 3.1e-35 151.8 108 69.4
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 4.1e-35 151.4 108 69.4
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 4.1e-35 151.4 108 65.7
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 4.1e-35 151.4 108 65.7
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 4.1e-35 151.4 108 67.6
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 6.9e-35 150.6 108 65.7
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 6.9e-35 150.6 108 64.8
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 64.8
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 1.2e-34 149.8 109 70.6
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 1.2e-34 149.8 108 67.6
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 3.4e-34 148.3 109 69.7
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 4.5e-34 147.9 108 61.1
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 4.5e-34 147.9 108 64.8
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 5.9e-34 147.5 108 67.6
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 7.6e-34 147.1 108 64.8
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 1.0e-33 146.7 108 68.5
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 1.0e-33 146.7 109 66.1
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 1.3e-33 146.4 108 66.7
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 1.7e-33 146.0 108 64.8
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 2.2e-33 145.6 108 62.0
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 3.8e-33 144.8 108 63.0
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 3.8e-33 144.8 108 62.0
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 3.8e-33 144.8 108 62.0
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 5.0e-33 144.4 107 62.6
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 5.0e-33 144.4 108 65.7
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 6.5e-33 144.1 108 60.2
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 8.5e-33 143.7 108 62.0
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 8.5e-33 143.7 108 64.8
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 8.5e-33 143.7 108 63.9
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.1e-32 143.3 108 63.9
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 1.1e-32 143.3 108 63.0
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 1.4e-32 142.9 109 67.0
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.4e-32 142.9 108 61.1
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.4e-32 142.9 108 65.7
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 1.4e-32 142.9 108 65.7
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 1.4e-32 142.9 104 67.3
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.9e-32 142.5 108 62.0
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.9e-32 142.5 108 64.8
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.5e-32 142.1 108 63.9
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 2.5e-32 142.1 108 64.8
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 3.2e-32 141.7 108 61.1
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 3.2e-32 141.7 108 62.0
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 4.2e-32 141.4 108 60.2
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 4.2e-32 141.4 109 65.1
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 4.2e-32 141.4 108 58.3
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 7.2e-32 140.6 109 59.6
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 7.2e-32 140.6 108 64.8
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 7.2e-32 140.6 108 65.7
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 9.3e-32 140.2 108 63.0
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 1.2e-31 139.8 108 63.9
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.2e-31 139.8 108 60.2
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 1.2e-31 139.8 108 64.8
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 1.2e-31 139.8 108 63.9
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 1.6e-31 139.4 108 60.2
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 1.6e-31 139.4 108 60.2
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 1.6e-31 139.4 108 63.9
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 2.1e-31 139.0 109 65.1
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 2.1e-31 139.0 108 63.0
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 2.1e-31 139.0 108 63.9
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 2.7e-31 138.7 108 63.9
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 2.7e-31 138.7 108 63.0
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 3.6e-31 138.3 109 64.2
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 3.6e-31 138.3 108 64.8
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 3.6e-31 138.3 108 64.8
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 3.6e-31 138.3 108 63.0
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 3.6e-31 138.3 108 62.0
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 3.6e-31 138.3 107 62.6
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 4.6e-31 137.9 108 63.0
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 7.9e-31 137.1 108 59.3
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 7.9e-31 137.1 108 59.3
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 7.9e-31 137.1 108 63.9
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.0e-30 136.7 108 63.0
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.4e-30 136.3 109 66.1
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 2.3e-30 135.6 108 63.0
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 2.3e-30 135.6 108 65.7
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 2.3e-30 135.6 108 63.0
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 3.9e-30 134.8 108 61.1
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 5.1e-30 134.4 108 63.9
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 5.1e-30 134.4 107 61.7
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 1.1e-29 133.3 108 62.0
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 1.5e-29 132.9 108 58.3
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 1.9e-29 132.5 86 76.7
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 1.9e-29 132.5 108 63.0
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 4.3e-29 131.3 108 62.0
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 5.7e-29 131.0 111 62.2
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 1.3e-28 129.8 108 59.3
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 1.3e-28 129.8 103 61.2
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 1.3e-28 129.8 100 62.0
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 3.7e-28 128.3 92 67.4
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 1.4e-27 126.3 108 50.9
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 2.4e-27 125.6 108 56.5
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 4.1e-27 124.8 96 60.4
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 4.1e-27 124.8 100 65.0
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 5.3e-27 124.4 86 72.1
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 9.1e-27 123.6 89 68.5
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 2.0e-26 122.5 94 66.0
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 2.6e-26 122.1 88 63.6
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 5.9e-26 120.9 88 65.9
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 1.7e-25 119.4 90 66.7
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 2.2e-25 119.0 108 54.6
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 3.8e-25 118.2 85 68.2
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 3.8e-25 118.2 85 68.2
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 5.0e-25 117.9 90 65.6
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 8.5e-25 117.1 87 66.7
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 8.5e-25 117.1 108 52.8
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 5.5e-24 114.4 87 65.5
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 5.5e-24 114.4 87 59.8
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 7.2e-24 114.0 86 62.8
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 2.7e-23 112.1 86 61.6
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 2.7e-23 112.1 86 61.6
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 6.1e-23 110.9 95 60.0
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 7.9e-23 110.5 86 70.9
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 3.0e-22 108.6 108 50.0
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 3.9e-22 108.2 86 61.6
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 6.7e-22 107.5 108 55.6
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 6.7e-22 107.5 108 48.1
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 2.6e-21 105.5 88 58.0
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 5.7e-21 104.4 72 65.3
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 2.4e-19 99.0 90 56.7
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 5.0e-17 91.3 101 43.6
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 6.5e-17 90.9 100 43.0
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 6.5e-17 90.9 106 39.6
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 8.5e-17 90.5 87 57.5
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 1.9e-16 89.4 86 53.5
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 3.2e-16 88.6 90 50.0
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 4.2e-16 88.2 108 42.6
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 7.2e-16 87.4 66 66.7
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 9.4e-16 87.0 58 69.0
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 5.7e-13 77.8 110 41.8
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 7.4e-13 77.4 65 61.5
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 3.7e-12 75.1 74 52.7
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 1.4e-11 73.2 111 39.6
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 7.7e-10 67.4 109 38.5
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 6.5e-09 64.3 72 45.8
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 6.5e-09 64.3 72 45.8
AUR62041784 Chenopodium quinoa HOM05D003690 ORTHO05D137882 5.5e-08 61.2 41 65.9


User provided reference genes

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