Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G123800 Manihot esculenta HOM05D006966 ORTHO05D008111 1.7e-133 479.6 282 100.0
Potri.005G037600 Populus trichocarpa HOM05D006966 ORTHO05D008111 7.6e-49 198.4 314 48.1
Potri.013G027100 Populus trichocarpa HOM05D006966 ORTHO05D008111 1.4e-47 194.1 319 42.9
Atru.chr2.499 Acer truncatum HOM05D006966 ORTHO05D008111 3.6e-43 179.5 324 43.8
Sabra13G0027800 Salix brachista HOM05D006966 ORTHO05D008111 2.4e-42 176.8 297 50.8
Sabra05G0038600 Salix brachista HOM05D006966 ORTHO05D008111 1.7e-40 170.6 313 39.9
Cfa006536 Carpinus fangiana HOM05D006966 ORTHO05D008111 6.6e-37 158.7 339 46.6
Cpa.g.sc48.3 Carica papaya HOM05D006966 ORTHO05D008111 8.7e-37 158.3 341 39.0
CiPaw.07G014000 Carya illinoinensis HOM05D006966 ORTHO05D008111 1.1e-36 157.9 335 38.8
Gohir.A11G262300 Gossypium hirsutum HOM05D006966 ORTHO05D008111 5.6e-36 155.6 315 42.2
Thecc.05G299500 Theobroma cacao HOM05D006966 ORTHO05D008111 1.4e-34 151.0 342 37.4
Gorai.007G293600 Gossypium raimondii HOM05D006966 ORTHO05D008111 4.0e-34 149.4 316 41.8
MD04G1210600 Malus domestica HOM05D006966 ORTHO05D008111 4.0e-34 149.4 370 43.2
FAN14G0100 Fragaria x ananassa HOM05D006966 ORTHO05D008111 1.2e-33 147.9 279 39.1
RcHm_v2.0_Chr3g0453941 Rosa chinensis HOM05D006966 ORTHO05D008111 3.4e-33 146.4 323 39.6
Ciclev10002008m.g Citrus clementina HOM05D006966 ORTHO05D008111 4.4e-33 146.0 308 37.3
CiPaw.08G167600 Carya illinoinensis HOM05D006966 ORTHO05D008111 5.8e-33 145.6 362 37.8
Gohir.D11G272300 Gossypium hirsutum HOM05D006966 ORTHO05D008111 1.3e-32 144.4 317 41.6
FAN05G1352 Fragaria x ananassa HOM05D006966 ORTHO05D008111 1.7e-32 144.1 309 38.8
Dinv22908 Davidia involucrata HOM05D006966 ORTHO05D008111 2.9e-32 143.3 311 38.3
FAN05G0025 Fragaria x ananassa HOM05D006966 ORTHO05D008111 2.9e-32 143.3 309 38.8
FAN05G1324 Fragaria x ananassa HOM05D006966 ORTHO05D008111 2.9e-32 143.3 309 38.8
Lj9P680T20 Lonicera japonica HOM05D006966 ORTHO05D008111 2.9e-32 143.3 304 39.5
Duzib177G0559 Durio zibethinus HOM05D006966 ORTHO05D008111 4.9e-32 142.5 333 36.9
FvH4_6g05230 Fragaria vesca HOM05D006966 ORTHO05D008111 4.9e-32 142.5 309 38.8
FAN14G4059 Fragaria x ananassa HOM05D006966 ORTHO05D008111 6.4e-32 142.1 279 38.4
FAN09G4667 Fragaria x ananassa HOM05D006966 ORTHO05D008111 2.4e-31 140.2 281 37.7
Hma1.2p1_0666F.1_g199360 Hydrangea macrophylla HOM05D006966 ORTHO05D008111 3.2e-31 139.8 324 37.0
MELO3C004314.2 Cucumis melo HOM05D006966 ORTHO05D008111 4.2e-31 139.4 319 40.8
TAR362G0564 Trochodendron aralioides HOM05D006966 ORTHO05D008111 2.7e-30 136.7 300 42.3
CsaV3_2G004840 Cucumis sativus L. HOM05D006966 ORTHO05D008111 3.5e-30 136.3 312 37.8
Prupe.6G331500 Prunus persica HOM05D006966 ORTHO05D008111 6.0e-30 135.6 357 40.1
Eucgr.H04442 Eucalyptus grandis HOM05D006966 ORTHO05D008111 1.3e-29 134.4 365 35.1
ClCG02G016130 Citrullus lanatus HOM05D006966 ORTHO05D008111 1.7e-29 134.0 302 38.7
COL.COLO4_13529 Corchorus olitorius HOM05D006966 ORTHO05D008111 3.9e-29 132.9 301 39.2
TAR633G0886 Trochodendron aralioides HOM05D006966 ORTHO05D008111 3.9e-29 132.9 307 37.1
MD12G1224900 Malus domestica HOM05D006966 ORTHO05D008111 5.1e-29 132.5 356 39.9
Duzib128G0678 Durio zibethinus HOM05D006966 ORTHO05D008111 6.6e-29 132.1 285 38.9
Dinv40245 Davidia involucrata HOM05D000556 ORTHO05D008111 3.6e-27 126.3 272 34.6
Gorai.004G243700 Gossypium raimondii HOM05D006966 ORTHO05D008111 4.8e-27 125.9 226 36.7
Cc02_g32560 Coffea canephora HOM05D006966 ORTHO05D008111 6.2e-27 125.6 309 32.4
Gohir.A08G212500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 1.1e-26 124.8 226 36.3
QL03p004162 Quercus lobata HOM05D006966 ORTHO05D008111 1.4e-26 124.4 341 39.3
Gohir.D08G229500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 5.3e-26 122.5 227 36.1
CSS0008116 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 1.5e-25 120.9 331 35.0
Rhsim05G0145100 Rhododendron simsii HOM05D006966 ORTHO05D008111 4.5e-25 119.4 228 39.5
PGSC0003DMG400028568 Solanum tuberosum HOM05D006966 ORTHO05D008111 4.5e-25 119.4 317 34.7
PGR031G1796 Punica granatum HOM05D006966 ORTHO05D008111 1.7e-24 117.5 309 38.2
Haze_04244 Corylus avellana HOM05D006966 ORTHO05D008111 8.4e-24 115.2 182 50.5
TWI12G1291 Tripterygium wilfordii HOM05D006966 ORTHO05D008111 1.4e-23 114.4 280 36.8
CAN.G1134.3 Capsicum annuum HOM05D006966 ORTHO05D008111 1.9e-23 114.0 233 34.8
Nitab4.5_0002848g0060 Nicotiana tabacum HOM05D006966 ORTHO05D008111 1.9e-23 114.0 212 38.7
CSS0005342 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 4.6e-22 109.4 192 44.8
Lj7P485T19 Lonicera japonica HOM05D006966 ORTHO05D008111 2.3e-21 107.1 332 33.4
Actinidia19807 Actinidia chinensis HOM05D001271 ORTHO05D008111 3.9e-21 106.3 227 36.6
Solyc01g098570.2 Solanum lycopersicum HOM05D006966 ORTHO05D008111 5.1e-21 105.9 192 39.6
Glyma.19G238400 Glycine max HOM05D006966 ORTHO05D008111 2.4e-18 97.1 220 35.0
FAN02G1750 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.0e-18 96.3 281 35.6
VMungo0540G1150 Vigna mungo HOM05D006966 ORTHO05D008111 5.3e-18 95.9 229 37.1
Peaxi162Scf00434g00052 Petunia axillaris HOM05D006966 ORTHO05D008111 3.4e-17 93.2 170 42.4
Sopen00g012390 Solanum pennellii HOM05D006966 ORTHO05D008111 1.0e-16 91.7 117 44.4
Ca_09380_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 1.7e-16 90.9 181 35.4
Phvul.006G095100 Phaseolus vulgaris HOM05D006966 ORTHO05D008111 2.2e-16 90.5 233 36.1
CANSAT54G0218 Cannabis sativa HOM05D006966 ORTHO05D008111 2.9e-16 90.1 380 30.5
Lj1g0017885 Lotus japonicus HOM05D006966 ORTHO05D008111 2.9e-16 90.1 203 35.5
Sed0007833 Sechium edule HOM05D006966 ORTHO05D008111 2.9e-16 90.1 283 30.4
Nn4g26120 Nelumbo nucifera HOM05D006966 ORTHO05D008111 5.5e-15 85.9 212 30.7
Psat3g009600 Pisum sativum HOM05D006966 ORTHO05D008111 5.5e-15 85.9 220 34.5
Medtr7g113950 Medicago truncatula HOM05D006966 ORTHO05D008111 1.6e-14 84.3 174 35.1
DCAR_022251 Daucus carota HOM05D006966 ORTHO05D008111 2.1e-14 84.0 313 29.4
Nn3g21196 Nelumbo nucifera HOM05D006966 ORTHO05D008111 2.7e-14 83.6 276 30.4
Glyma.03G240900 Glycine max HOM05D006966 ORTHO05D008111 1.3e-13 81.3 221 34.4
MBI19_g33142_MAGBIO Magnolia biondii HOM05D006966 ORTHO05D008111 1.8e-13 80.9 290 30.7
TPR.G33165 Trifolium pratense HOM05D006966 ORTHO05D008111 3.0e-13 80.1 163 39.3
Aa31LG2G11900 Aethionema arabicum HOM05D006966 ORTHO05D008111 6.7e-13 79.0 214 34.1
Carub.0002s0866 Capsella rubella HOM05D006966 ORTHO05D008111 8.7e-13 78.6 116 39.7
SpUn0002_0320 Schrenkiella parvula HOM05D006966 ORTHO05D008111 4.3e-12 76.3 113 42.5
CARHR055880 Cardamine hirsuta HOM05D006966 ORTHO05D008111 5.7e-12 75.9 123 40.7
Lj5g0008249 Lotus japonicus HOM05D006966 ORTHO05D008111 5.7e-12 75.9 135 40.7
TWI36G1607 Tripterygium wilfordii HOM05D006966 ORTHO05D008111 2.1e-11 73.9 105 49.5
arahy.Tifrunner.gnm1.ann1.3A5YKQ Arachis hypogaea HOM05D006966 ORTHO05D008111 8.2e-11 72.0 226 29.6
DCAR_003308 Daucus carota HOM05D006966 ORTHO05D008111 8.2e-11 72.0 283 29.3
Aqoxy2G03182 Aquilegia oxysepala HOM05D006966 ORTHO05D008111 1.4e-10 71.2 315 29.8
AL1G65140 Arabidopsis lyrata HOM05D006966 ORTHO05D008111 4.1e-10 69.7 92 40.2
Glyma.10G157600 Glycine max HOM05D006966 ORTHO05D008111 4.1e-10 69.7 143 34.3
Sc09g0003390 Simmondsia chinensis HOM05D006966 ORTHO05D008111 4.1e-10 69.7 68 51.5
AT1G54740 Arabidopsis thaliana HOM05D006966 ORTHO05D008111 6.9e-10 68.9 96 38.5
PSO210G4305 Papaver somniferum HOM05D006966 ORTHO05D008111 6.9e-10 68.9 121 38.8
Thhalv10023602m.g Eutrema salsugineum HOM05D006966 ORTHO05D008111 2.0e-09 67.4 94 40.4
Medtr1g082320 Medicago truncatula HOM05D006966 ORTHO05D008111 2.6e-09 67.0 65 49.2
Peaxi162Scf00071g00710 Petunia axillaris HOM05D006966 ORTHO05D008111 3.4e-09 66.6 82 47.6
BcaB04g20143 Brassica carinata HOM05D006966 ORTHO05D008111 5.9e-09 65.9 76 46.1
Glyma.20G231100 Glycine max HOM05D006966 ORTHO05D008111 7.6e-09 65.5 119 34.5
Ca_10083_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 1.3e-08 64.7 111 44.1
Sc16g0008300 Simmondsia chinensis HOM05D006966 ORTHO05D008111 1.7e-08 64.3 89 44.9
Aqoxy5G00570 Aquilegia oxysepala HOM05D006966 ORTHO05D008111 5.0e-08 62.8 90 40.0
PSO832G1078 Papaver somniferum HOM05D006966 ORTHO05D008111 5.0e-08 62.8 144 33.3
Lalb_Chr06g0167831 Lupinus albus HOM05D006966 ORTHO05D008111 1.1e-07 61.6 135 33.3
GSVIVG01022036001 Vitis vinifera HOM05D006966 ORTHO05D008111 1.1e-07 61.6 133 39.1
VMungo0720G1138 Vigna mungo HOM05D006966 ORTHO05D008111 1.4e-07 61.2 120 33.3
Aqoxy4G02755 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 5.5e-07 59.3 93 37.6
CDE05G1565 Ceratophyllum demersum HOM05D006966 ORTHO05D008111 9.3e-07 58.5 304 27.0
ATR0580G269 Amborella trichopoda HOM05D006966 ORTHO05D008111 6.1e-06 55.8 183 27.3


User provided reference genes

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