Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 6.6e-122 440.7 213 100.0
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 3.1e-79 298.9 215 74.0
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 1.3e-77 293.5 210 67.6
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 4.1e-71 271.9 212 64.6
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 5.3e-71 271.6 195 69.2
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 2.6e-70 269.2 214 64.5
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 1.0e-69 267.3 246 58.9
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 1.7e-69 266.5 216 64.4
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 3.2e-68 262.3 219 63.0
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 1.6e-67 260.0 222 64.4
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 3.9e-66 255.4 214 62.1
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 6.7e-66 254.6 218 62.8
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 2.0e-65 253.1 216 62.0
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 5.7e-65 251.5 213 61.5
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 7.4e-65 251.1 218 62.8
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 1.7e-64 250.0 219 61.2
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 1.7e-64 250.0 219 63.5
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 2.2e-64 249.6 219 63.5
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 2.2e-64 249.6 219 63.5
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 3.7e-64 248.8 218 60.6
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 6.3e-64 248.1 215 60.5
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 6.3e-64 248.1 217 63.1
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 9.1e-63 244.2 219 58.4
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 1.5e-62 243.4 202 60.9
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 4.5e-62 241.9 216 58.8
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.9e-61 239.2 222 60.8
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 5.0e-61 238.4 220 60.9
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 1.1e-60 237.3 213 60.6
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 3.2e-60 235.7 216 59.7
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 3.2e-60 235.7 217 56.2
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 1.6e-59 233.4 215 59.5
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 2.1e-59 233.0 207 59.9
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 1.4e-58 230.3 196 62.2
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.4e-58 230.3 215 58.1
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 2.3e-58 229.6 216 62.0
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 8.8e-58 227.6 183 66.1
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 1.5e-57 226.9 211 59.7
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 2.6e-57 226.1 220 57.7
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 7.4e-57 224.6 222 57.7
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 1.7e-56 223.4 215 55.8
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 1.7e-56 223.4 212 57.1
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 2.2e-56 223.0 226 56.2
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 2.8e-56 222.6 127 80.3
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 1.8e-55 219.9 213 57.3
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 4.1e-55 218.8 216 56.9
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 3.8e-53 212.2 218 55.5
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 5.0e-53 211.8 208 57.2
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 6.5e-53 211.5 221 55.7
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 1.9e-52 209.9 130 73.8
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 1.9e-52 209.9 130 73.8
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 9.4e-52 207.6 214 57.0
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 1.6e-51 206.8 192 56.2
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 1.4e-50 203.8 208 56.2
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 2.3e-50 203.0 215 56.3
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 4.0e-50 202.2 191 55.5
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 1.5e-49 200.3 223 51.6
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 1.5e-49 200.3 191 54.5
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 4.4e-49 198.7 182 58.2
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 5.7e-49 198.4 201 52.7
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 5.7e-49 198.4 215 54.0
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 5.7e-49 198.4 207 53.6
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 7.5e-49 198.0 194 55.7
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 1.7e-48 196.8 192 53.6
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 1.7e-48 196.8 96 88.5
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 2.8e-48 196.1 203 52.2
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 6.3e-48 194.9 203 51.7
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 1.1e-47 194.1 207 50.7
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 1.4e-47 193.7 199 52.3
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 1.4e-47 193.7 191 52.9
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 1.8e-47 193.4 192 53.1
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 2.4e-47 193.0 151 60.3
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 3.1e-47 192.6 213 49.8
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 3.1e-47 192.6 219 56.6
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 4.1e-47 192.2 194 55.2
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 5.3e-47 191.8 209 52.6
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 9.1e-47 191.0 190 55.3
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 1.2e-46 190.7 215 53.0
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 1.6e-46 190.3 199 51.8
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 1.6e-46 190.3 153 64.1
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 2.0e-46 189.9 140 64.3
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 5.9e-46 188.3 193 54.9
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 7.7e-46 188.0 209 53.1
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 1.3e-45 187.2 146 61.0
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 2.9e-45 186.0 207 51.7
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 5.0e-45 185.3 193 54.4
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 6.5e-45 184.9 192 53.6
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 1.5e-44 183.7 99 80.8
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 1.9e-44 183.3 202 52.0
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 2.7e-43 179.5 178 53.9
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 6.1e-43 178.3 211 50.7
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 2.3e-42 176.4 110 70.0
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 2.6e-41 172.9 144 61.1
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 7.0e-39 164.9 197 48.7
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 3.5e-38 162.5 218 44.0
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 2.2e-37 159.8 78 87.2
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 8.0e-35 151.4 107 65.4
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 1.0e-34 151.0 146 54.8
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 1.2e-33 147.5 149 57.0
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 1.2e-33 147.5 191 45.5
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.2e-32 143.3 170 49.4
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.1e-31 141.0 172 48.3
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 1.4e-31 140.6 108 60.2
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 5.0e-29 132.1 118 54.2
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 5.6e-28 128.6 92 60.9
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 1.2e-27 127.5 198 37.4
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 6.1e-27 125.2 123 49.6
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 1.0e-26 124.4 118 53.4
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 1.1e-23 114.4 68 75.0
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 8.6e-21 104.8 72 65.3
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 4.3e-20 102.4 147 45.6
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 1.6e-19 100.5 74 67.6
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 4.7e-19 99.0 147 44.2
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 7.3e-12 75.1 130 36.9
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 3.6e-11 72.8 146 36.3
Cre07.g339200 Chlamydomonas reinhardtii HOM05D007022 ORTHO05D008868 1.3e-08 64.3 62 40.3
SEGI_30369 Sequoiadendron giganteum HOM05D007022 ORTHO05D014789 2.1e-06 57.0 100 41.0


User provided reference genes

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