Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 1.5e-62 242.7 122 100.0
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 1.7e-37 159.5 119 68.1
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 1.5e-30 136.3 123 58.5
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 2.0e-30 136.0 111 64.9
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 8.4e-29 130.6 123 54.5
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 8.4e-29 130.6 124 58.9
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 9.3e-28 127.1 128 54.7
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 9.3e-28 127.1 125 56.0
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 3.9e-26 121.7 121 52.9
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 3.9e-26 121.7 121 52.9
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 8.7e-26 120.6 122 52.5
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 7.3e-25 117.5 122 54.1
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 9.6e-25 117.1 122 50.8
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 1.6e-24 116.3 122 50.8
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 2.1e-24 115.9 131 50.4
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 2.8e-24 115.5 127 52.0
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 3.6e-24 115.2 122 50.0
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 4.0e-23 111.7 122 50.8
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 5.3e-23 111.3 123 49.6
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 1.2e-22 110.2 127 48.8
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 2.0e-22 109.4 126 51.6
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 4.4e-22 108.2 120 50.8
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 5.8e-22 107.8 123 47.2
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 5.8e-22 107.8 124 45.2
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 9.9e-22 107.1 124 47.6
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 9.9e-22 107.1 124 47.6
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 1.3e-21 106.7 118 53.4
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 1.7e-21 106.3 93 60.2
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 5.4e-20 101.3 126 52.4
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 9.3e-20 100.5 70 64.3
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 1.6e-19 99.8 90 56.7
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 2.1e-19 99.4 123 48.8
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 2.1e-19 99.4 92 54.3
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 2.1e-19 99.4 109 48.6
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 2.1e-19 99.4 124 46.8
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 2.7e-19 99.0 70 62.9
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 3.5e-19 98.6 117 49.6
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 6.0e-19 97.8 75 58.7
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 1.0e-18 97.1 120 50.0
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 1.3e-18 96.7 129 44.2
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 1.7e-18 96.3 124 41.9
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 2.3e-18 95.9 96 52.1
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 2.3e-18 95.9 66 65.2
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 2.3e-18 95.9 122 44.3
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 3.0e-18 95.5 120 47.5
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 3.9e-18 95.1 113 51.3
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 1.9e-17 92.8 88 53.4
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 9.6e-17 90.5 128 42.2
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 2.8e-16 89.0 128 41.4
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 6.2e-16 87.8 126 42.1
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 8.1e-16 87.4 122 41.8
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 1.1e-15 87.0 125 43.2
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 2.4e-15 85.9 56 66.1
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 4.0e-15 85.1 97 50.5
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 1.7e-13 79.7 66 62.1
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 4.9e-13 78.2 53 64.2
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 8.4e-13 77.4 55 63.6
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 9.3e-12 73.9 126 41.3
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 4.6e-11 71.6 126 41.3
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 2.3e-10 69.3 115 40.0
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 6.7e-10 67.8 111 40.5
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 6.7e-10 67.8 111 40.5
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 1.1e-09 67.0 103 41.7
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 1.1e-09 67.0 103 41.7
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 1.1e-09 67.0 103 40.8
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 2.5e-09 65.9 95 47.4
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 4.3e-09 65.1 95 45.3
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 5.6e-09 64.7 95 46.3
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 5.6e-09 64.7 44 65.9
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 5.6e-09 64.7 44 65.9
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 7.4e-09 64.3 58 56.9
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 1.6e-08 63.2 95 45.3
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 1.6e-08 63.2 95 45.3
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 1.1e-07 60.5 89 44.9
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 1.8e-07 59.7 48 54.2
ATR0332G088 Amborella trichopoda HOM05D007963 ORTHO05D009967 4.0e-07 58.5 50 54.0
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 6.9e-07 57.8 115 39.1
Pp3c24_5190 Physcomitrium patens HOM05D025110 ORTHO05D009967 2.6e-06 55.8 81 40.7
AagrBONN_evm.TU.Sc2ySwM_228.4962 Anthoceros agrestis HOM05D025110 ORTHO05D009967 5.8e-06 54.7 75 44.0
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 7.6e-06 54.3 79 45.6
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 1.0e-05 53.9 127 33.1


User provided reference genes

Program Settings