Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G139000 Manihot esculenta HOM05D006795 ORTHO05D008573 8.1e-125 450.3 207 100.0
Manes.06G149000 Manihot esculenta HOM05D006795 ORTHO05D008573 4.9e-106 387.9 182 96.7
Potri.015G132300 Populus trichocarpa HOM05D006795 ORTHO05D008573 1.5e-86 323.2 186 79.6
CiPaw.03G097900 Carya illinoinensis HOM05D006795 ORTHO05D008573 4.3e-86 321.6 193 74.1
MD01G1187300 Malus domestica HOM05D006795 ORTHO05D008573 1.7e-85 319.7 193 73.6
Dinv07998 Davidia involucrata HOM05D006795 ORTHO05D008573 2.8e-85 318.9 194 75.3
MD07G1259600 Malus domestica HOM05D006795 ORTHO05D008573 2.4e-84 315.8 188 73.9
Sabra15G0145100 Salix brachista HOM05D006795 ORTHO05D008573 6.9e-84 314.3 187 78.1
Haze_13816 Corylus avellana HOM05D006795 ORTHO05D008573 9.1e-84 313.9 192 74.5
Cpa.g.sc3.258 Carica papaya HOM05D006795 ORTHO05D008573 1.5e-83 313.2 192 73.4
FAN06G0634 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.6e-83 312.4 189 72.5
FAN06G3003 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.6e-83 312.4 189 72.5
COL.COLO4_14197 Corchorus olitorius HOM05D006795 ORTHO05D008573 4.5e-83 311.6 187 75.4
FvH4_7g28300 Fragaria vesca HOM05D006795 ORTHO05D008573 5.9e-83 311.2 190 72.1
Prupe.2G283700 Prunus persica HOM05D006795 ORTHO05D008573 1.3e-82 310.1 192 73.4
TWI39G0269 Tripterygium wilfordii HOM05D006795 ORTHO05D008573 1.7e-82 309.7 194 72.7
QL12p039358 Quercus lobata HOM05D006795 ORTHO05D008573 5.0e-82 308.1 190 71.6
FAN10G2418 Fragaria x ananassa HOM05D006795 ORTHO05D008573 1.1e-81 307.0 189 70.9
FAN03G1183 Fragaria x ananassa HOM05D001585 ORTHO05D001677 1.4e-81 306.6 199 69.3
Lj5g0021204 Lotus japonicus HOM05D006795 ORTHO05D008573 1.4e-81 306.6 197 69.5
GSVIVG01018489001 Vitis vinifera HOM05D006795 ORTHO05D008573 1.9e-81 306.2 190 74.2
Lj8A35T83 Lonicera japonica HOM05D006795 ORTHO05D008573 2.5e-81 305.8 186 74.2
TAR636G0045 Trochodendron aralioides HOM05D006795 ORTHO05D008573 2.5e-81 305.8 192 70.3
CSS0024840 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 3.2e-81 305.4 194 72.2
CAN.G1187.5 Capsicum annuum HOM05D006795 ORTHO05D008573 3.2e-81 305.4 195 68.7
Duzib068G1417 Durio zibethinus HOM05D006795 ORTHO05D008573 3.2e-81 305.4 187 72.7
FAN03G1859 Fragaria x ananassa HOM05D001585 ORTHO05D001677 5.5e-81 304.7 189 71.4
Rhsim03G0172800 Rhododendron simsii HOM05D006795 ORTHO05D008573 7.2e-81 304.3 204 68.1
Thecc.03G163300 Theobroma cacao HOM05D006795 ORTHO05D008573 7.2e-81 304.3 187 72.7
vmacro06760 Vaccinium macrocarpon HOM05D006795 ORTHO05D008573 1.2e-80 303.5 195 71.3
PGR042G2278 Punica granatum HOM05D006795 ORTHO05D008573 2.7e-80 302.4 191 72.8
CANSAT21G1655 Cannabis sativa HOM05D006795 ORTHO05D008573 3.6e-80 302.0 188 72.9
Medtr1g102470 Medicago truncatula HOM05D006795 ORTHO05D008573 7.9e-80 300.8 192 69.3
ECA238G4708 Erigeron canadensis HOM05D006795 ORTHO05D008573 1.4e-79 300.1 195 69.2
Peaxi162Scf00132g00138 Petunia axillaris HOM05D006795 ORTHO05D008573 1.8e-79 299.7 193 71.5
RcHm_v2.0_Chr1g0375271 Rosa chinensis HOM05D006795 ORTHO05D008573 2.3e-79 299.3 193 69.4
arahy.Tifrunner.gnm1.ann1.939HGU Arachis hypogaea HOM05D006795 ORTHO05D008573 1.5e-78 296.6 191 70.2
Ciclev10005807m.g Citrus clementina HOM05D006795 ORTHO05D008573 1.5e-78 296.6 191 72.3
Glyma.10G242200 Glycine max HOM05D006795 ORTHO05D008573 2.0e-78 296.2 200 67.5
Sc13g0008130 Simmondsia chinensis HOM05D006795 ORTHO05D008573 2.0e-78 296.2 183 71.0
arahy.Tifrunner.gnm1.ann1.ATT3CU Arachis hypogaea HOM05D006795 ORTHO05D008573 2.6e-78 295.8 191 69.6
Gorai.006G196200 Gossypium raimondii HOM05D006795 ORTHO05D008573 3.3e-78 295.4 199 67.3
AUR62016086 Chenopodium quinoa HOM05D006795 ORTHO05D008573 5.7e-78 294.7 188 68.6
Atru.chr1.614 Acer truncatum HOM05D006795 ORTHO05D008573 7.4e-78 294.3 189 72.5
Hund04657 Selenicereus undatus HOM05D006795 ORTHO05D008573 7.4e-78 294.3 191 70.7
ClCG11G008970 Citrullus lanatus HOM05D006795 ORTHO05D008573 1.7e-77 293.1 189 71.4
Glyma.20G151900 Glycine max HOM05D006795 ORTHO05D008573 2.2e-77 292.7 194 69.1
Nitab4.5_0001589g0020 Nicotiana tabacum HOM05D006795 ORTHO05D008573 2.8e-77 292.4 195 68.2
AUR62035033 Chenopodium quinoa HOM05D006795 ORTHO05D008573 4.8e-77 291.6 188 68.6
Nn1g01176 Nelumbo nucifera HOM05D006795 ORTHO05D008573 4.8e-77 291.6 193 68.9
BcaC03g14579 Brassica carinata HOM05D006795 ORTHO05D008573 1.1e-76 290.4 191 69.1
Thhalv10014608m.g Eutrema salsugineum HOM05D006795 ORTHO05D008573 1.4e-76 290.0 187 70.1
C02p20240 Brassica napus HOM05D006795 ORTHO05D008573 2.4e-76 289.3 190 69.5
MSTRG.119 Avicennia marina HOM05D006795 ORTHO05D008573 3.1e-76 288.9 195 67.7
BolC2t08156H Brassica oleracea HOM05D006795 ORTHO05D008573 5.3e-76 288.1 190 68.9
Gohir.A09G178600 Gossypium hirsutum HOM05D006795 ORTHO05D008573 9.1e-76 287.3 184 69.0
Gohir.D09G174200 Gossypium hirsutum HOM05D006795 ORTHO05D008573 9.1e-76 287.3 184 69.0
Actinidia31794 Actinidia chinensis HOM05D006795 ORTHO05D008573 1.2e-75 287.0 193 69.9
Aa31LG3G8130 Aethionema arabicum HOM05D006795 ORTHO05D008573 1.2e-75 287.0 185 68.1
A02p12140 Brassica napus HOM05D006795 ORTHO05D008573 1.2e-75 287.0 190 68.9
Solyc11g072290.3 Solanum lycopersicum HOM05D006795 ORTHO05D008573 2.0e-75 286.2 195 66.2
Eucgr.A02872 Eucalyptus grandis HOM05D006795 ORTHO05D008573 2.6e-75 285.8 197 67.5
Ah.13g067570 Amaranthus hybridus HOM05D006795 ORTHO05D008573 3.4e-75 285.4 180 70.6
FAN01G1007 Fragaria x ananassa HOM05D006795 ORTHO05D008573 3.4e-75 285.4 182 72.0
PSO478G2429 Papaver somniferum HOM05D006795 ORTHO05D008573 3.4e-75 285.4 191 68.6
Oeu021736.1 Olea europaea HOM05D006795 ORTHO05D008573 4.5e-75 285.0 187 69.5
PSO782G4689 Papaver somniferum HOM05D006795 ORTHO05D008573 4.5e-75 285.0 191 68.6
BraA02t06278Z Brassica rapa HOM05D006795 ORTHO05D008573 5.9e-75 284.6 204 62.7
SGA_v2.0_scaffold2G01112 Striga asiatica HOM05D006795 ORTHO05D008573 5.9e-75 284.6 189 69.8
THA.LOC104825075 Tarenaya hassleriana HOM05D006795 ORTHO05D008573 1.0e-74 283.9 187 67.4
BcaB08g35519 Brassica carinata HOM05D006795 ORTHO05D008573 1.7e-74 283.1 187 69.0
Nitab4.5_0000205g0150 Nicotiana tabacum HOM05D006795 ORTHO05D008573 1.7e-74 283.1 196 66.8
Lsat_1_v5_gn_2_129741 Lactuca sativa HOM05D006795 ORTHO05D008573 3.8e-74 282.0 196 66.3
Cc02_g03780 Coffea canephora HOM05D006795 ORTHO05D008573 5.0e-74 281.6 193 67.4
Migut.F00416 Erythranthe guttata HOM05D006795 ORTHO05D008573 1.4e-73 280.0 191 63.9
Actinidia03085 Actinidia chinensis HOM05D006795 ORTHO05D008573 1.9e-73 279.6 187 69.5
EL10Ac3g05773 Beta vulgaris HOM05D006795 ORTHO05D008573 1.9e-73 279.6 188 67.6
CDE06G1038 Ceratophyllum demersum HOM05D006795 ORTHO05D008573 2.5e-73 279.3 195 66.7
BcaB05g23990 Brassica carinata HOM05D006795 ORTHO05D008573 3.2e-73 278.9 185 66.5
Lalb_Chr02g0140771 Lupinus albus HOM05D006795 ORTHO05D008573 3.2e-73 278.9 190 67.9
Aqoxy7G00570 Aquilegia oxysepala HOM05D006795 ORTHO05D008573 4.2e-73 278.5 193 65.8
Psat6g202120 Pisum sativum HOM05D006795 ORTHO05D008573 5.5e-73 278.1 189 67.7
Psat6g202920 Pisum sativum HOM05D006795 ORTHO05D008573 5.5e-73 278.1 189 67.7
unitig_0.g1164 Utricularia gibba HOM05D006795 ORTHO05D008573 5.5e-73 278.1 191 66.5
TPR.G26107 Trifolium pratense HOM05D006795 ORTHO05D008573 2.1e-72 276.2 198 64.1
Sed0014900 Sechium edule HOM05D006795 ORTHO05D008573 3.6e-72 275.4 180 68.3
A10p09570 Brassica napus HOM05D006795 ORTHO05D008573 1.0e-71 273.9 190 66.8
BraA10t43032Z Brassica rapa HOM05D006795 ORTHO05D008573 1.0e-71 273.9 190 66.8
Carub.0008s1172 Capsella rubella HOM05D006795 ORTHO05D008573 1.0e-71 273.9 181 68.0
Sopen11g029960 Solanum pennellii HOM05D006795 ORTHO05D008573 1.0e-71 273.9 189 66.7
AT5G51700 Arabidopsis thaliana HOM05D006795 ORTHO05D008573 1.4e-71 273.5 181 68.0
CARHR264540 Cardamine hirsuta HOM05D006795 ORTHO05D008573 2.3e-71 272.7 186 64.5
AL8G25950 Arabidopsis lyrata HOM05D006795 ORTHO05D008573 3.9e-71 271.9 181 68.0
CsaV3_2G010830 Cucumis sativus L. HOM05D006795 ORTHO05D008573 1.5e-70 270.0 189 65.6
HPP92_005470 Vanilla planifolia HOM05D006795 ORTHO05D008573 1.5e-70 270.0 188 66.5
Os02g0535400 Oryza sativa ssp. japonica HOM05D006795 ORTHO05D008573 3.3e-70 268.9 184 64.7
SEGI_28069 Sequoiadendron giganteum HOM05D006795 ORTHO05D008573 4.8e-69 265.0 186 63.4
ATR1145G092 Amborella trichopoda HOM05D006795 ORTHO05D008573 8.2e-69 264.2 200 60.0
Sp6g13920 Schrenkiella parvula HOM05D006795 ORTHO05D008573 1.2e-67 260.4 182 62.6
Zm00001eb242890 Zea mays HOM05D006795 ORTHO05D008573 4.5e-67 258.5 182 62.6
Mapoly0020s0061 Marchantia polymorpha HOM05D006795 ORTHO05D008573 5.5e-65 251.5 189 58.7
Pp3c14_10540 Physcomitrium patens HOM05D006795 ORTHO05D008573 1.5e-62 243.4 193 58.0
CSS0028605 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 4.8e-61 238.4 162 69.8
Ca_10834_v3 Cicer arietinum L. HOM05D006795 ORTHO05D008573 8.2e-61 237.7 181 60.8
Oeu042417.2 Olea europaea HOM05D006795 ORTHO05D008573 1.1e-60 237.3 191 62.3
SMO146G0237 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 1.2e-59 233.8 186 56.5
SalBow4G0392 Salvia bowleyana HOM05D006795 ORTHO05D008573 5.5e-57 224.9 160 65.0
SalBow4G1076 Salvia bowleyana HOM05D006795 ORTHO05D008573 5.5e-57 224.9 160 65.0
CBR_g32001 Chara braunii HOM05D006795 ORTHO05D008573 8.0e-56 221.1 204 51.0
VMungo0720G2517 Vigna mungo HOM05D006795 ORTHO05D008573 1.3e-53 213.8 160 62.5
TAR629G1442 Trochodendron aralioides HOM05D006795 ORTHO05D008573 1.7e-53 213.4 168 59.5
Phvul.007G063300 Phaseolus vulgaris HOM05D006795 ORTHO05D008573 1.1e-52 210.7 140 63.6
PGSC0003DMG400027380 Solanum tuberosum HOM05D006795 ORTHO05D008573 7.2e-49 198.0 133 65.4
MCO02G265 Micromonas commoda HOM05D006795 ORTHO05D008573 3.6e-48 195.7 206 45.1
Zm00001eb181460 Zea mays HOM05D006795 ORTHO05D008573 1.3e-37 160.6 81 79.0
MELO3C008527.2 Cucumis melo HOM05D006795 ORTHO05D008573 2.3e-34 149.8 73 79.5
SMO146G0045 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 2.1e-11 73.6 162 33.3
PRCOL_00002330 Prasinoderma coloniale HOM05D006795 ORTHO05D008573 2.8e-08 63.2 61 39.3


User provided reference genes

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