Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G106900 Manihot esculenta HOM05D007589 ORTHO05D009610 2.5e-83 314.3 732 100.0
Potri.012G088900 Populus trichocarpa HOM05D007589 ORTHO05D009610 1.7e-47 195.3 197 79.7
Thecc.03G018500 Theobroma cacao HOM05D007589 ORTHO05D009610 1.0e-44 186.0 196 75.5
COL.COLO4_30097 Corchorus olitorius HOM05D007589 ORTHO05D009610 8.8e-41 172.9 200 72.0
Dinv38564 Davidia involucrata HOM05D007589 ORTHO05D009610 8.8e-41 172.9 197 76.6
Thecc.03G016900 Theobroma cacao HOM05D007589 ORTHO05D009610 1.2e-40 172.6 131 63.4
Thecc.03G017300 Theobroma cacao HOM05D007589 ORTHO05D009610 2.6e-40 171.4 131 63.4
QL10p010870 Quercus lobata HOM05D007589 ORTHO05D009610 4.4e-40 170.6 197 74.6
Sabra12G0064000 Salix brachista HOM05D007589 ORTHO05D009610 7.5e-40 169.9 196 72.4
TAR622G1378 Trochodendron aralioides HOM05D007589 ORTHO05D009610 2.2e-39 168.3 197 74.6
Cpa.g.sc153.3 Carica papaya HOM05D007589 ORTHO05D009610 6.3e-39 166.8 196 74.0
Atru.chr9.2516 Acer truncatum HOM05D007589 ORTHO05D009610 8.3e-39 166.4 195 72.3
CiPaw.11G023600 Carya illinoinensis HOM05D007589 ORTHO05D009610 9.1e-38 162.9 200 67.0
Duzib205G0427 Durio zibethinus HOM05D007589 ORTHO05D009610 1.2e-37 162.5 199 71.9
Psat4g058560 Pisum sativum HOM05D007589 ORTHO05D009610 2.7e-37 161.4 197 69.5
Ca_21937_v3 Cicer arietinum L. HOM05D007589 ORTHO05D009610 4.5e-37 160.6 199 60.8
TWI39G0990 Tripterygium wilfordii HOM05D007589 ORTHO05D009610 2.9e-36 157.9 110 69.1
Prupe.5G170700 Prunus persica HOM05D007589 ORTHO05D009610 3.8e-36 157.5 177 76.8
Rhsim08G0174500 Rhododendron simsii HOM05D007589 ORTHO05D009610 3.8e-36 157.5 198 70.2
TPR.G37464 Trifolium pratense HOM05D007589 ORTHO05D009610 5.0e-36 157.1 198 68.7
Medtr4g105520 Medicago truncatula HOM05D007589 ORTHO05D009610 8.5e-36 156.4 197 67.0
MBI16_g14592_MAGBIO Magnolia biondii HOM05D007589 ORTHO05D009610 2.5e-35 154.8 129 61.2
Gohir.A03G090200 Gossypium hirsutum HOM05D007589 ORTHO05D009610 5.5e-35 153.7 204 71.1
MSTRG.11473 Avicennia marina HOM05D007589 ORTHO05D009610 9.4e-35 152.9 199 67.3
Nitab4.5_0003229g0060 Nicotiana tabacum HOM05D007589 ORTHO05D009610 1.6e-34 152.1 193 71.0
Peaxi162Scf00089g00175 Petunia axillaris HOM05D007589 ORTHO05D009610 1.6e-34 152.1 194 70.6
Gohir.D02G117800 Gossypium hirsutum HOM05D007589 ORTHO05D009610 2.7e-34 151.4 204 70.6
Gorai.005G135700 Gossypium raimondii HOM05D007589 ORTHO05D009610 3.6e-34 151.0 204 70.6
Sed0025689 Sechium edule HOM05D007589 ORTHO05D009610 4.7e-34 150.6 130 60.8
Nitab4.5_0001207g0080 Nicotiana tabacum HOM05D007589 ORTHO05D009610 1.4e-33 149.1 193 70.5
Actinidia19335 Actinidia chinensis HOM05D007589 ORTHO05D009610 3.0e-33 147.9 196 69.9
Haze_07540 Corylus avellana HOM05D007589 ORTHO05D009610 3.0e-33 147.9 200 72.0
Eucgr.K02824 Eucalyptus grandis HOM05D007589 ORTHO05D009610 6.8e-33 146.7 196 70.9
TAR629G1736 Trochodendron aralioides HOM05D007589 ORTHO05D009610 8.8e-33 146.4 132 59.1
Cfa019165 Carpinus fangiana HOM05D007589 ORTHO05D009610 1.2e-32 146.0 201 72.1
PGR044G1443 Punica granatum HOM05D007589 ORTHO05D009610 4.4e-32 144.1 205 67.8
Actinidia33084 Actinidia chinensis HOM05D007589 ORTHO05D009610 5.7e-32 143.7 133 57.1
RcHm_v2.0_Chr7g0193201 Rosa chinensis HOM05D007589 ORTHO05D009610 3.7e-31 141.0 187 71.1
Nn4g22695 Nelumbo nucifera HOM05D007589 ORTHO05D009610 4.9e-31 140.6 178 71.9
Glyma.05G039100 Glycine max HOM05D007589 ORTHO05D009610 1.8e-30 138.7 199 68.3
Glyma.04G185400 Glycine max HOM05D007589 ORTHO05D009610 4.1e-30 137.5 196 67.3
Glyma.17G087700 Glycine max HOM05D007589 ORTHO05D009610 1.6e-29 135.6 198 68.2
CANSAT80G2749 Cannabis sativa HOM05D007589 ORTHO05D009610 2.7e-29 134.8 205 64.9
VMungo1215G1669 Vigna mungo HOM05D007589 ORTHO05D009610 2.7e-29 134.8 197 68.0
Aqoxy3G02849 Aquilegia oxysepala HOM05D007589 ORTHO05D009610 3.5e-29 134.4 185 64.9
FAN08G2091 Fragaria x ananassa HOM05D007589 ORTHO05D009610 3.5e-29 134.4 187 69.0
Cc04_g12300 Coffea canephora HOM05D007589 ORTHO05D009610 7.7e-29 133.3 173 72.8
PSO591G0140 Papaver somniferum HOM05D007589 ORTHO05D009610 1.3e-28 132.5 131 55.0
DCAR_016475 Daucus carota HOM05D007589 ORTHO05D009610 1.7e-28 132.1 193 60.6
CAN.G1166.19 Capsicum annuum HOM05D007589 ORTHO05D009610 8.6e-28 129.8 194 69.1
Lj4g0004851 Lotus japonicus HOM05D007589 ORTHO05D009610 8.6e-28 129.8 202 65.8
FAN13G1429 Fragaria x ananassa HOM05D007589 ORTHO05D009610 1.1e-27 129.4 180 70.6
PGSC0003DMG400018163 Solanum tuberosum HOM05D007589 ORTHO05D009610 1.1e-27 129.4 194 69.1
Phvul.003G202100 Phaseolus vulgaris HOM05D007589 ORTHO05D009610 1.5e-27 129.0 198 66.2
Solyc03g112680.3 Solanum lycopersicum HOM05D007589 ORTHO05D009610 1.9e-27 128.6 194 68.6
FAN04G0457 Fragaria x ananassa HOM05D007589 ORTHO05D009610 2.5e-27 128.3 187 66.3
FvH4_5g05610 Fragaria vesca HOM05D007589 ORTHO05D009610 5.6e-27 127.1 123 54.5
FAN18G2238 Fragaria x ananassa HOM05D007589 ORTHO05D009610 5.6e-27 127.1 123 54.5
ClCG01G013280 Citrullus lanatus HOM05D007589 ORTHO05D009610 1.2e-26 125.9 110 60.9
Sopen03g031760 Solanum pennellii HOM05D007589 ORTHO05D009610 3.6e-26 124.4 194 67.5
AUR62008185 Chenopodium quinoa HOM05D003072 ORTHO05D008464 6.1e-26 123.6 188 65.4
SalBow5G4666 Salvia bowleyana HOM05D007589 ORTHO05D009610 1.0e-25 122.9 198 54.5
VMungo1309G1240 Vigna mungo HOM05D007589 ORTHO05D009610 2.3e-25 121.7 196 61.7
AUR62028765 Chenopodium quinoa HOM05D003072 ORTHO05D008464 6.8e-25 120.2 188 65.4
CsaV3_1G008640 Cucumis sativus L. HOM05D007589 ORTHO05D009610 6.8e-25 120.2 109 58.7
Phvul.009G176400 Phaseolus vulgaris HOM05D007589 ORTHO05D009610 1.2e-24 119.4 195 62.6
Ciclev10024596m.g Citrus clementina HOM05D007589 ORTHO05D009610 2.0e-24 118.6 200 63.5
MELO3C002280.2 Cucumis melo HOM05D007589 ORTHO05D009610 3.4e-24 117.9 110 56.4
EL10Ac5g10716 Beta vulgaris HOM05D007589 ORTHO05D009610 2.2e-23 115.2 186 66.7
FAN18G4153 Fragaria x ananassa HOM05D007589 ORTHO05D009610 2.2e-23 115.2 117 52.1
Sc12g0005220 Simmondsia chinensis HOM05D007589 ORTHO05D009610 2.9e-23 114.8 184 61.4
Lsat_1_v5_gn_4_75740 Lactuca sativa HOM05D007589 ORTHO05D009610 1.1e-22 112.8 200 53.5
Thecc.03G018200 Theobroma cacao HOM05D007589 ORTHO05D009610 7.0e-22 110.2 83 63.9
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 9.2e-22 109.8 188 55.3
arahy.Tifrunner.gnm1.ann1.VU2AWH Arachis hypogaea HOM05D007589 ORTHO05D009610 7.3e-19 100.1 176 59.1
arahy.Tifrunner.gnm1.ann1.T4P8DW Arachis hypogaea HOM05D007589 ORTHO05D009610 9.5e-19 99.8 175 57.7
GSVIVG01007707001 Vitis vinifera HOM05D007589 ORTHO05D009610 9.5e-19 99.8 198 59.1
arahy.Tifrunner.gnm1.ann1.F1J4V4 Arachis hypogaea HOM05D007589 ORTHO05D009610 1.2e-18 99.4 175 57.1
SGA_v2.0_scaffold25G10827 Striga asiatica HOM05D007589 ORTHO05D009610 5.2e-17 94.0 103 44.7
SGA_v2.0_scaffold90G27887 Striga asiatica HOM05D007589 ORTHO05D009610 1.7e-15 89.0 107 42.1
Os05g0170300 Oryza sativa ssp. japonica HOM05D007589 ORTHO05D009610 3.7e-15 87.8 186 59.7
Migut.O00121 Erythranthe guttata HOM05D007589 ORTHO05D009610 1.1e-14 86.3 145 70.3
CDE05G1299 Ceratophyllum demersum HOM05D007589 ORTHO05D009610 7.0e-14 83.6 106 41.5
HPP92_003441 Vanilla planifolia HOM05D007589 ORTHO05D009610 3.0e-12 78.2 128 36.7
arahy.Tifrunner.gnm1.ann1.A9F7WL Arachis hypogaea HOM05D007589 ORTHO05D009610 1.5e-11 75.9 121 40.5
Zm00001eb283380 Zea mays HOM05D007589 ORTHO05D009610 1.5e-11 75.9 173 59.0
ATR1152G048 Amborella trichopoda HOM05D007589 ORTHO05D009610 3.6e-10 71.2 113 41.6
MD06G1171800 Malus domestica HOM05D007589 ORTHO05D009610 2.9e-07 61.6 98 45.9


User provided reference genes

Program Settings