Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 6.3e-41 170.2 81 100.0
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 2.3e-35 151.8 81 87.7
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.1e-32 142.9 81 81.5
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 2.4e-32 141.7 81 82.7
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 3.1e-32 141.4 81 81.5
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 9.2e-32 139.8 81 80.2
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 1.2e-31 139.4 81 80.2
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 1.2e-31 139.4 81 80.2
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 1.6e-31 139.0 81 80.2
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 1.6e-31 139.0 81 79.0
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 2.0e-31 138.7 81 79.0
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 2.0e-31 138.7 81 80.2
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 2.7e-31 138.3 81 80.2
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 2.7e-31 138.3 81 80.2
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 2.7e-31 138.3 81 77.8
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.7e-31 138.3 81 77.8
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.7e-31 138.3 81 77.8
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 2.7e-31 138.3 81 77.8
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.7e-31 138.3 81 80.2
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 2.7e-31 138.3 81 79.0
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 3.5e-31 137.9 81 79.0
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 4.5e-31 137.5 81 80.2
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 4.5e-31 137.5 81 79.0
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 4.5e-31 137.5 81 79.0
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 4.5e-31 137.5 81 79.0
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 4.5e-31 137.5 81 79.0
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 4.5e-31 137.5 81 76.5
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 5.9e-31 137.1 81 77.8
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 5.9e-31 137.1 81 77.8
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 5.9e-31 137.1 81 79.0
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 7.8e-31 136.7 81 79.0
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 1.0e-30 136.3 81 77.8
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 1.3e-30 136.0 81 79.0
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.3e-30 136.0 81 79.0
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.3e-30 136.0 81 79.0
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 1.3e-30 136.0 81 79.0
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 1.7e-30 135.6 81 77.8
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 1.7e-30 135.6 81 77.8
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 1.7e-30 135.6 81 77.8
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 2.9e-30 134.8 81 79.0
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 2.9e-30 134.8 81 79.0
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 2.9e-30 134.8 81 75.3
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 3.8e-30 134.4 81 74.1
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 3.8e-30 134.4 81 77.8
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 5.0e-30 134.0 81 77.8
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 5.0e-30 134.0 81 77.8
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 5.0e-30 134.0 81 77.8
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 5.0e-30 134.0 81 77.8
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 6.6e-30 133.7 81 76.5
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 6.6e-30 133.7 81 74.1
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 1.1e-29 132.9 81 75.3
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 1.1e-29 132.9 81 75.3
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 1.1e-29 132.9 81 75.3
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 1.1e-29 132.9 81 75.3
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 1.1e-29 132.9 81 75.3
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 1.1e-29 132.9 81 76.5
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 1.1e-29 132.9 81 76.5
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 1.5e-29 132.5 81 76.5
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 1.5e-29 132.5 81 76.5
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 1.9e-29 132.1 81 75.3
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 1.9e-29 132.1 81 75.3
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 1.9e-29 132.1 81 75.3
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 3.3e-29 131.3 81 74.1
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 3.3e-29 131.3 81 75.3
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 4.3e-29 131.0 81 75.3
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 4.3e-29 131.0 81 76.5
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 5.6e-29 130.6 81 74.1
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 5.6e-29 130.6 82 76.8
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 9.5e-29 129.8 81 75.3
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 9.5e-29 129.8 81 75.3
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 1.2e-28 129.4 81 74.1
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 1.2e-28 129.4 81 75.3
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 1.6e-28 129.0 81 74.1
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 2.1e-28 128.6 81 72.8
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 2.8e-28 128.3 81 70.4
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 1.4e-27 125.9 81 69.1
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 1.4e-27 125.9 81 69.1
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 1.4e-27 125.9 81 69.1
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 1.8e-27 125.6 81 72.8
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 2.3e-27 125.2 81 72.8
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 2.3e-27 125.2 81 72.8
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 2.3e-27 125.2 81 72.8
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 2.3e-27 125.2 81 72.8
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 2.3e-27 125.2 81 72.8
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 2.3e-27 125.2 81 72.8
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 2.3e-27 125.2 81 72.8
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 2.3e-27 125.2 81 72.8
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 2.3e-27 125.2 81 72.8
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 4.0e-27 124.4 81 71.6
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 6.8e-27 123.6 81 71.6
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 6.8e-27 123.6 108 58.3
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 6.8e-27 123.6 88 70.5
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 6.8e-27 123.6 81 69.1
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 1.2e-26 122.9 81 70.4
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 1.2e-26 122.9 81 67.9
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 1.2e-26 122.9 81 66.7
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 2.2e-25 118.6 81 65.4
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 6.4e-25 117.1 74 75.7
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 1.1e-24 116.3 63 84.1
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 9.2e-24 113.2 72 73.6
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 3.0e-22 108.2 81 64.2
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 5.0e-22 107.5 61 83.6
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 1.1e-21 106.3 72 68.1
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 9.5e-21 103.2 66 78.8
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 2.1e-20 102.1 66 75.8
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 4.7e-20 100.9 61 78.7
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 8.0e-20 100.1 69 65.2
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 1.1e-19 99.8 73 65.8
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 4.0e-19 97.8 61 77.0
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 6.8e-19 97.1 61 77.0
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 8.9e-19 96.7 67 65.7
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.4e-18 94.7 85 56.5
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 1.3e-17 92.8 61 72.1
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 3.7e-17 91.3 81 56.8
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 3.7e-17 91.3 81 56.8
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 1.1e-16 89.7 61 70.5
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.4e-16 89.4 81 55.6
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 1.4e-16 89.4 86 54.7
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 1.9e-16 89.0 80 51.2
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 7.0e-16 87.0 61 67.2
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 1.3e-14 82.8 81 46.9
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 8.6e-14 80.1 43 79.1
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 1.6e-12 75.9 50 74.0
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 2.6e-10 68.6 81 40.7
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 1.7e-09 65.9 40 77.5
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 3.7e-09 64.7 42 76.2
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 4.1e-08 61.2 47 61.7
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 3.9e-06 54.7 44 56.8


User provided reference genes

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