Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 6.0e-260 900.2 422 100.0
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 1.1e-224 783.1 442 84.2
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 2.3e-203 712.2 442 78.1
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 5.7e-202 707.6 442 77.6
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 9.2e-200 700.3 442 76.5
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 3.5e-199 698.4 442 76.9
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 8.0e-196 687.2 442 75.1
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 3.4e-194 681.8 452 73.0
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 1.1e-192 676.8 443 73.4
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 5.9e-191 671.0 452 72.3
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.0e-190 670.2 440 73.4
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 2.3e-190 669.1 452 71.7
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.0e-190 668.7 452 71.5
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 1.6e-188 662.9 443 72.2
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 2.1e-188 662.5 443 71.8
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 2.8e-188 662.1 443 71.8
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 1.1e-187 660.2 452 70.6
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.1e-187 660.2 451 71.2
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 1.8e-187 659.4 439 72.4
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 3.1e-187 658.7 443 72.0
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 4.0e-187 658.3 448 71.7
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 5.2e-187 657.9 443 71.8
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 8.9e-187 657.1 441 72.3
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 8.9e-187 657.1 452 69.5
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 4.4e-186 654.8 443 70.7
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 4.4e-186 654.8 443 70.9
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 5.8e-186 654.4 451 70.7
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 5.8e-186 654.4 452 69.2
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 5.8e-186 654.4 445 71.2
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 7.5e-186 654.1 445 72.6
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.3e-185 653.3 448 71.7
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 4.9e-185 651.4 443 70.2
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 4.9e-185 651.4 446 70.6
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 6.4e-185 651.0 443 70.0
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 8.3e-185 650.6 444 70.7
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 2.4e-184 649.0 441 71.4
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 4.1e-184 648.3 444 70.7
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 5.4e-184 647.9 444 70.7
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 1.2e-183 646.7 444 70.5
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 1.2e-183 646.7 443 69.8
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 2.0e-183 646.0 442 69.9
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 2.7e-183 645.6 454 69.8
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 3.5e-183 645.2 443 70.0
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 1.7e-182 642.9 443 71.1
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 3.0e-182 642.1 442 69.7
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 3.9e-182 641.7 442 69.9
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 5.0e-182 641.3 443 69.8
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.1e-181 640.2 459 69.3
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 1.1e-181 640.2 446 69.7
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 1.9e-181 639.4 447 70.0
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 9.5e-181 637.1 444 69.4
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 9.5e-181 637.1 439 69.9
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 9.5e-181 637.1 444 69.4
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 1.2e-180 636.7 446 68.8
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 1.2e-180 636.7 445 69.9
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 1.6e-180 636.3 443 69.5
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 2.1e-180 636.0 444 69.4
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.8e-180 635.6 442 69.0
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 4.7e-180 634.8 442 69.2
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 6.2e-180 634.4 443 69.1
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 6.2e-180 634.4 440 69.1
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 6.2e-180 634.4 443 70.0
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 8.1e-180 634.0 446 69.5
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.1e-179 633.6 446 67.9
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.4e-179 633.3 439 69.9
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 1.8e-179 632.9 444 69.1
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 2.3e-179 632.5 442 68.8
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 5.2e-179 631.3 443 70.4
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 5.2e-179 631.3 445 69.9
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 5.2e-179 631.3 442 68.6
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 6.8e-179 630.9 441 68.0
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 1.2e-178 630.2 443 69.3
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 1.2e-178 630.2 443 69.3
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 2.0e-178 629.4 446 67.5
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 2.0e-178 629.4 448 69.0
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.0e-178 629.4 450 67.8
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 2.6e-178 629.0 447 69.6
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 2.6e-178 629.0 445 69.2
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 4.4e-178 628.2 442 67.9
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 9.9e-178 627.1 447 68.0
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 1.3e-177 626.7 448 69.4
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.3e-177 626.7 445 68.1
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 1.3e-177 626.7 442 67.2
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.9e-177 625.5 444 68.9
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 2.9e-177 625.5 441 69.4
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 2.9e-177 625.5 449 68.2
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 6.4e-177 624.4 432 68.8
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 8.3e-177 624.0 438 70.1
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 1.4e-176 623.2 445 69.9
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 7.1e-176 620.9 439 69.5
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 2.1e-175 619.4 380 75.8
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 3.5e-175 618.6 447 67.1
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 6.0e-175 617.8 365 77.5
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 1.3e-174 616.7 365 77.5
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 5.1e-174 614.8 446 67.3
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 3.6e-172 608.6 408 70.1
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 4.7e-172 608.2 408 70.1
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 6.2e-172 607.8 441 67.1
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.8e-171 606.3 444 66.9
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 3.1e-171 605.5 481 63.8
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 8.9e-171 604.0 444 67.1
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 8.9e-171 604.0 517 59.2
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 7.6e-170 600.9 436 68.6
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 1.4e-168 596.7 446 66.1
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 1.4e-168 596.7 432 67.6
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 2.4e-168 595.9 436 66.1
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 7.8e-167 590.9 442 65.6
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 1.5e-165 586.6 438 65.1
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 1.2e-164 583.6 434 67.7
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 3.6e-164 582.0 383 71.5
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.4e-163 580.1 439 66.5
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 8.1e-156 554.3 453 61.1
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 2.4e-155 552.7 440 61.6
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 3.4e-154 548.9 444 62.6
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 9.9e-154 547.4 323 79.3
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 9.9e-154 547.4 439 61.5
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.3e-153 547.0 433 64.2
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 6.7e-150 534.6 327 76.1
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.9e-149 533.1 348 73.3
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 2.4e-144 516.2 436 60.6
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 1.9e-141 506.5 411 60.6
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 4.0e-139 498.8 379 61.2
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 4.9e-137 491.9 290 77.2
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.4e-136 490.3 287 78.0
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 3.2e-136 489.2 289 77.5
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 5.5e-136 488.4 288 77.4
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 1.4e-128 463.8 347 66.9
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 9.7e-125 451.1 269 78.4
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.0e-122 443.4 403 60.0
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.7e-121 440.3 335 59.4
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 5.3e-115 418.7 306 69.6
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.0e-113 414.5 311 64.3
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 1.1e-107 394.4 386 49.5
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 4.5e-106 389.0 304 63.5
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 1.4e-102 377.5 285 61.1
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.2e-93 347.8 343 48.1
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 5.0e-81 305.8 324 44.8
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 3.6e-79 299.7 275 58.2
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.2e-77 294.7 319 46.4
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 1.9e-64 250.8 139 81.3
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 9.5e-56 221.9 160 67.5
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.3e-49 201.4 124 71.8
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.7e-49 201.1 119 74.8
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.7e-44 184.5 138 60.1
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 1.9e-43 181.0 127 66.1
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.4e-37 160.2 108 69.4
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 2.3e-25 120.9 80 66.2
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 1.6e-23 114.8 106 52.8
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 6.9e-22 109.4 81 65.4
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 6.9e-22 109.4 81 65.4
SHI25903 Sapria himalayana HOM05D004680 ORTHO05D365905 6.5e-12 76.3 162 34.0
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 2.5e-11 74.3 52 65.4
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 1.4e-09 68.6 119 37.0
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 2.3e-09 67.8 131 37.4
BcaB01g02088 Brassica carinata HOM05D004680 ORTHO05D039099 6.3e-07 59.7 30 80.0


User provided reference genes

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