Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G102300 Manihot esculenta HOM05D007259 ORTHO05D009158 1.7e-96 355.9 165 100.0
Sabra01G0030500 Salix brachista HOM05D007259 ORTHO05D009158 2.3e-82 308.9 165 86.7
Potri.001G044200 Populus trichocarpa HOM05D007259 ORTHO05D009158 2.0e-81 305.8 165 85.5
FvH4_6g28630 Fragaria vesca HOM05D007259 ORTHO05D009158 1.1e-79 300.1 165 83.6
FAN05G5272 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.1e-79 300.1 165 83.6
FAN14G4954 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.1e-79 300.1 165 83.6
QL05p036089 Quercus lobata HOM05D007259 ORTHO05D009158 2.4e-79 298.9 166 83.7
RcHm_v2.0_Chr2g0132951 Rosa chinensis HOM05D007259 ORTHO05D009158 2.4e-79 298.9 165 83.6
Gohir.D06G118700 Gossypium hirsutum HOM05D007259 ORTHO05D009158 1.2e-78 296.6 165 83.6
CAN.G1932.2 Capsicum annuum HOM05D007259 ORTHO05D009158 2.0e-78 295.8 165 83.0
Gorai.010G136500 Gossypium raimondii HOM05D007259 ORTHO05D009158 3.5e-78 295.0 165 83.0
Actinidia36875 Actinidia chinensis HOM05D007259 ORTHO05D009158 4.5e-78 294.7 163 83.4
TWI75G0585 Tripterygium wilfordii HOM05D007259 ORTHO05D009158 4.5e-78 294.7 165 83.0
Ciclev10026584m.g Citrus clementina HOM05D007259 ORTHO05D009158 1.3e-77 293.1 165 82.4
Gohir.A06G114200 Gossypium hirsutum HOM05D007259 ORTHO05D009158 1.3e-77 293.1 165 82.4
Sopen06g025720 Solanum pennellii HOM05D007259 ORTHO05D009158 1.7e-77 292.7 165 82.4
PSO170G4635 Papaver somniferum HOM05D007259 ORTHO05D009158 2.2e-77 292.4 166 83.7
Peaxi162Scf00207g00430 Petunia axillaris HOM05D007259 ORTHO05D009158 5.0e-77 291.2 165 80.0
Cc04_g05120 Coffea canephora HOM05D007259 ORTHO05D009158 6.5e-77 290.8 165 78.8
Lj3g0012869 Lotus japonicus HOM05D007259 ORTHO05D009158 6.5e-77 290.8 161 82.6
PSO017G0751 Papaver somniferum HOM05D007259 ORTHO05D009158 6.5e-77 290.8 166 83.7
FAN09G1653 Fragaria x ananassa HOM05D007259 ORTHO05D009158 8.5e-77 290.4 164 82.9
Medtr4g007095 Medicago truncatula HOM05D007259 ORTHO05D009158 1.1e-76 290.0 165 81.2
Solyc06g068470.3 Solanum lycopersicum HOM05D007259 ORTHO05D009158 1.1e-76 290.0 165 81.2
Cfa001880 Carpinus fangiana HOM05D007259 ORTHO05D009158 1.9e-76 289.3 165 80.6
VMungo0331G0163 Vigna mungo HOM05D007259 ORTHO05D009158 1.9e-76 289.3 163 81.6
Lsat_1_v5_gn_5_8261 Lactuca sativa HOM05D007259 ORTHO05D009158 2.5e-76 288.9 165 78.8
Eucgr.F03958 Eucalyptus grandis HOM05D007259 ORTHO05D009158 5.5e-76 287.7 165 78.8
Rhsim08G0205600 Rhododendron simsii HOM05D007259 ORTHO05D009158 5.5e-76 287.7 163 81.6
Sc12g0008330 Simmondsia chinensis HOM05D007259 ORTHO05D009158 5.5e-76 287.7 161 78.9
Duzib235G0063 Durio zibethinus HOM05D007259 ORTHO05D009158 9.4e-76 287.0 165 80.6
Lalb_Chr01g0012071 Lupinus albus HOM05D007259 ORTHO05D009158 1.6e-75 286.2 163 79.8
Ah.01g006970 Amaranthus hybridus HOM05D007259 ORTHO05D009158 2.1e-75 285.8 161 82.0
Sp5g34900 Schrenkiella parvula HOM05D007259 ORTHO05D009158 2.1e-75 285.8 165 80.0
Hund00433 Selenicereus undatus HOM05D007259 ORTHO05D009158 2.1e-75 285.8 161 80.7
PGSC0003DMG400028490 Solanum tuberosum HOM05D007259 ORTHO05D009158 2.1e-75 285.8 165 80.0
Prupe.3G098300 Prunus persica HOM05D007259 ORTHO05D009158 2.7e-75 285.4 161 82.6
PGR102G1952 Punica granatum HOM05D007259 ORTHO05D009158 3.6e-75 285.0 165 80.0
ClCG10G012930 Citrullus lanatus HOM05D007259 ORTHO05D009158 8.0e-75 283.9 161 80.7
BcaB05g25221 Brassica carinata HOM05D007259 ORTHO05D009158 1.0e-74 283.5 165 78.2
CANSAT56G1631 Cannabis sativa HOM05D007259 ORTHO05D009158 1.4e-74 283.1 165 78.8
Oeu060130.1 Olea europaea HOM05D007259 ORTHO05D009158 1.4e-74 283.1 161 79.5
Thecc.06G041800 Theobroma cacao HOM05D007259 ORTHO05D009158 1.4e-74 283.1 165 79.4
BcaC03g15926 Brassica carinata HOM05D007259 ORTHO05D009158 1.8e-74 282.7 165 78.2
BolC2t09700H Brassica oleracea HOM05D007259 ORTHO05D009158 1.8e-74 282.7 165 78.2
CSS0004525 Camellia sinensis var. sinensis HOM05D007259 ORTHO05D009158 1.8e-74 282.7 163 81.0
Carub.0002s2668 Capsella rubella HOM05D007259 ORTHO05D009158 1.8e-74 282.7 165 78.8
Dinv21412 Davidia involucrata HOM05D007259 ORTHO05D009158 1.8e-74 282.7 165 79.4
AL2G40530 Arabidopsis lyrata HOM05D007259 ORTHO05D009158 2.3e-74 282.3 165 80.6
Aa31LG4G1140 Aethionema arabicum HOM05D007259 ORTHO05D009158 3.0e-74 282.0 164 79.3
C02p36870 Brassica napus HOM05D007259 ORTHO05D009158 4.0e-74 281.6 165 77.6
Thhalv10019243m.g Eutrema salsugineum HOM05D007259 ORTHO05D009158 6.8e-74 280.8 165 78.2
GSVIVG01015956001 Vitis vinifera HOM05D007259 ORTHO05D009158 6.8e-74 280.8 165 78.2
AT1G80860 Arabidopsis thaliana HOM05D007259 ORTHO05D009158 8.8e-74 280.4 165 78.8
CsaV3_3G032790 Cucumis sativus L. HOM05D007259 ORTHO05D009158 8.8e-74 280.4 161 80.1
A02p23100 Brassica napus HOM05D007259 ORTHO05D009158 1.5e-73 279.6 165 77.6
BraA02t07308Z Brassica rapa HOM05D007259 ORTHO05D009158 1.5e-73 279.6 165 77.6
Lj5A81T88 Lonicera japonica HOM05D007259 ORTHO05D009158 1.5e-73 279.6 165 77.6
TPR.G23079 Trifolium pratense HOM05D007259 ORTHO05D009158 1.5e-73 279.6 165 77.6
CARHR073610 Cardamine hirsuta HOM05D007259 ORTHO05D009158 3.4e-73 278.5 165 80.0
CiPaw.01G254600 Carya illinoinensis HOM05D007259 ORTHO05D009158 3.4e-73 278.5 165 79.4
HanXRQChr05g0153761 Helianthus annuus HOM05D007259 ORTHO05D009158 3.4e-73 278.5 165 76.4
Medtr4g007090 Medicago truncatula HOM05D007259 ORTHO05D009158 4.4e-73 278.1 165 77.6
TPR.G23090 Trifolium pratense HOM05D007259 ORTHO05D009158 5.7e-73 277.7 165 78.2
Atru.chr10.2413 Acer truncatum HOM05D007259 ORTHO05D009158 7.5e-73 277.3 165 76.4
MSTRG.4677 Avicennia marina HOM05D007259 ORTHO05D009158 9.8e-73 276.9 165 77.0
Glyma.08G218900 Glycine max HOM05D007259 ORTHO05D009158 9.8e-73 276.9 166 78.3
EL10Ac9g22206 Beta vulgaris HOM05D007259 ORTHO05D009158 1.7e-72 276.2 166 78.3
THA.LOC104812409 Tarenaya hassleriana HOM05D007259 ORTHO05D009158 3.7e-72 275.0 165 78.2
Migut.D01126 Erythranthe guttata HOM05D007259 ORTHO05D009158 3.1e-71 271.9 163 76.1
Phvul.010G161400 Phaseolus vulgaris HOM05D007259 ORTHO05D009158 3.1e-71 271.9 163 77.3
Psat7g260280 Pisum sativum HOM05D007259 ORTHO05D009158 2.0e-70 269.2 158 79.7
SalBow6G4962 Salvia bowleyana HOM05D007259 ORTHO05D009158 4.5e-70 268.1 164 72.0
Sed0006537 Sechium edule HOM05D007259 ORTHO05D009158 4.5e-70 268.1 161 77.0
SGA_v2.0_scaffold26G11300 Striga asiatica HOM05D007259 ORTHO05D009158 1.0e-69 266.9 163 74.8
Nitab4.5_0008962g0030 Nicotiana tabacum HOM05D007259 ORTHO05D009158 1.5e-68 263.1 143 83.9
Nn8g39898 Nelumbo nucifera HOM05D007259 ORTHO05D009158 1.2e-67 260.0 165 73.3
Os02g0612100 Oryza sativa ssp. japonica HOM05D007259 ORTHO05D009158 1.3e-61 240.0 164 71.3
MBI15_g08512_MAGBIO Magnolia biondii HOM05D007259 ORTHO05D009158 1.7e-61 239.6 161 68.3
Haze_16667 Corylus avellana HOM05D007259 ORTHO05D009158 3.9e-61 238.4 262 50.4
Zm00001eb184520 Zea mays HOM05D007259 ORTHO05D009158 5.0e-61 238.0 161 70.2
BcaB05g25224 Brassica carinata HOM05D007259 ORTHO05D009158 3.3e-60 235.3 165 69.7
unitig_60.g25615 Utricularia gibba HOM05D007259 ORTHO05D009158 6.2e-59 231.1 197 56.9
ECA246G0776 Erigeron canadensis HOM05D007259 ORTHO05D009158 1.7e-56 223.0 126 84.1
Potri.003G182400 Populus trichocarpa HOM05D007259 ORTHO05D009158 1.4e-55 219.9 117 85.5
CDE12G0386 Ceratophyllum demersum HOM05D007259 ORTHO05D009158 3.0e-53 212.2 140 68.6
HPP92_010735 Vanilla planifolia HOM05D007259 ORTHO05D009158 3.6e-51 205.3 156 62.2
SMO141G0127 Selaginella moellendorffii HOM05D007259 ORTHO05D009158 2.0e-49 199.5 159 57.2
AagrBONN_evm.TU.Sc2ySwM_117.1157 Anthoceros agrestis HOM05D007259 ORTHO05D009158 2.6e-49 199.1 157 59.9
DCAR_021369 Daucus carota HOM05D007259 ORTHO05D009158 4.9e-48 194.9 126 76.2
SEGI_39537 Sequoiadendron giganteum HOM05D007259 ORTHO05D009158 3.2e-47 192.2 159 57.9
Pp3c6_3720 Physcomitrium patens HOM05D007259 ORTHO05D009158 3.3e-44 182.2 164 53.7
Glyma.07G022900 Glycine max HOM05D007259 ORTHO05D009158 1.1e-36 157.1 84 85.7
MD17G1223400 Malus domestica HOM05D007259 ORTHO05D009158 3.6e-35 152.1 79 87.3
vmacro19057 Vaccinium macrocarpon HOM05D007259 ORTHO05D009158 6.2e-35 151.4 82 86.6
MD17G1223600 Malus domestica HOM05D007259 ORTHO05D009158 1.8e-34 149.8 83 78.3
Aqoxy2G00331 Aquilegia oxysepala HOM05D001307 ORTHO05D001158 6.9e-34 147.9 91 73.6
FAN02G2583 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.2e-33 147.1 82 78.0
Nitab4.5_0000886g0050 Nicotiana tabacum HOM05D007259 ORTHO05D009158 1.5e-33 146.7 91 69.2
Cpa.g.sc10.78 Carica papaya HOM05D007259 ORTHO05D009158 3.2e-31 139.0 82 75.6
ATR0739G058 Amborella trichopoda HOM05D007259 ORTHO05D009158 2.7e-30 136.0 83 74.7
MELO3C026739.2 Cucumis melo HOM05D007259 ORTHO05D009158 6.6e-29 131.3 82 72.0
Lj5C80T7 Lonicera japonica HOM05D007259 ORTHO05D009158 9.6e-28 127.5 82 70.7
HPP92_010738 Vanilla planifolia HOM05D007259 ORTHO05D009158 1.1e-26 124.0 94 66.0
SalBow8G2481 Salvia bowleyana HOM05D007259 ORTHO05D009158 2.6e-17 92.8 71 66.2
COL.COLO4_26703 Corchorus olitorius HOM05D007259 ORTHO05D009158 8.1e-11 71.2 43 79.1


User provided reference genes

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