Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G138852 Manihot esculenta HOM05D000283 ORTHO05D004861 2.1e-55 218.8 110 100.0
Manes.03G138849 Manihot esculenta HOM05D000283 ORTHO05D004861 8.0e-39 163.7 86 97.7
Manes.10G039500 Manihot esculenta HOM05D000283 ORTHO05D004861 2.7e-34 148.7 86 87.2
Manes.07G106200 Manihot esculenta HOM05D000283 ORTHO05D004861 3.7e-28 128.3 84 77.4
Lj8A93G63 Lonicera japonica HOM05D000283 ORTHO05D004861 4.9e-28 127.9 84 75.0
Potri.008G047300 Populus trichocarpa HOM05D000283 ORTHO05D004861 4.9e-28 127.9 84 77.4
Sabra08G0033500 Salix brachista HOM05D000283 ORTHO05D004861 2.4e-27 125.6 91 72.5
Duzib114G0902 Durio zibethinus HOM05D000283 ORTHO05D004861 4.1e-27 124.8 87 74.7
TWI63G0514 Tripterygium wilfordii HOM05D000283 ORTHO05D004861 9.2e-27 123.6 86 70.9
Gohir.A10G208700 Gossypium hirsutum HOM05D000283 ORTHO05D004861 1.6e-26 122.9 87 74.7
Dinv31387 Davidia involucrata HOM05D000283 ORTHO05D004861 2.1e-26 122.5 82 73.2
Duzib106G0238 Durio zibethinus HOM05D000283 ORTHO05D004861 2.1e-26 122.5 87 73.6
Gohir.D10G217000 Gossypium hirsutum HOM05D000283 ORTHO05D004861 2.1e-26 122.5 87 74.7
Gorai.011G242600 Gossypium raimondii HOM05D000283 ORTHO05D004861 3.5e-26 121.7 86 74.4
Oeu050636.1 Olea europaea HOM05D000283 ORTHO05D004861 7.8e-26 120.6 84 73.8
Sabra10G0165600 Salix brachista HOM05D000283 ORTHO05D004861 7.8e-26 120.6 83 75.9
Haze_16966 Corylus avellana HOM05D000283 ORTHO05D004861 1.0e-25 120.2 82 73.2
Gohir.D04G081100 Gossypium hirsutum HOM05D000283 ORTHO05D004861 1.0e-25 120.2 87 71.3
Gorai.012G092000 Gossypium raimondii HOM05D000283 ORTHO05D004861 1.0e-25 120.2 87 71.3
Cpa.g.sc1.298 Carica papaya HOM05D000283 ORTHO05D004861 1.3e-25 119.8 84 71.4
QL08p057473 Quercus lobata HOM05D000283 ORTHO05D004861 1.3e-25 119.8 89 69.7
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 2.3e-25 119.0 84 70.2
Medtr1g116055 Medicago truncatula HOM05D000283 ORTHO05D004861 2.3e-25 119.0 82 73.2
Solyc04g010120.3 Solanum lycopersicum HOM05D000283 ORTHO05D004861 2.3e-25 119.0 86 70.9
Sopen04g005260 Solanum pennellii HOM05D000283 ORTHO05D004861 2.3e-25 119.0 86 70.9
Prupe.2G222200 Prunus persica HOM05D000283 ORTHO05D004861 3.9e-25 118.2 83 74.7
Ca_11339_v3 Cicer arietinum L. HOM05D000283 ORTHO05D004861 6.6e-25 117.5 88 68.2
Cc02_g08700 Coffea canephora HOM05D000283 ORTHO05D004861 6.6e-25 117.5 83 73.5
TPR.G10404 Trifolium pratense HOM05D000283 ORTHO05D004861 6.6e-25 117.5 85 68.2
CSS0043771 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 8.6e-25 117.1 82 70.7
CiPaw.01G279200 Carya illinoinensis HOM05D000283 ORTHO05D004861 8.6e-25 117.1 85 68.2
Hma1.2p1_0207F.1_g087990 Hydrangea macrophylla HOM05D000283 ORTHO05D004861 8.6e-25 117.1 83 72.3
Lj5g0010112 Lotus japonicus HOM05D004526 ORTHO05D004861 8.6e-25 117.1 82 72.0
CSS0021401 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 1.5e-24 116.3 84 71.4
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 1.5e-24 116.3 82 73.2
Nn2g12826 Nelumbo nucifera HOM05D000283 ORTHO05D004861 1.5e-24 116.3 82 68.3
AUR62043534 Chenopodium quinoa HOM05D000283 ORTHO05D004861 2.5e-24 115.5 86 67.4
AUR62043801 Chenopodium quinoa HOM05D000283 ORTHO05D004861 2.5e-24 115.5 86 67.4
MD01G1115200 Malus domestica HOM05D000283 ORTHO05D004861 2.5e-24 115.5 83 72.3
Aa31LG10G10070 Aethionema arabicum HOM05D000283 ORTHO05D004861 3.3e-24 115.2 89 65.2
SGA_v2.0_scaffold426G51499 Striga asiatica HOM05D000283 ORTHO05D004861 3.3e-24 115.2 96 62.5
Actinidia13845 Actinidia chinensis HOM05D000283 ORTHO05D004861 5.6e-24 114.4 83 72.3
CSS0031096 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 5.6e-24 114.4 81 70.4
CSS0033958 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 5.6e-24 114.4 81 70.4
Nitab4.5_0006737g0080 Nicotiana tabacum HOM05D000283 ORTHO05D004861 5.6e-24 114.4 89 69.7
MSTRG.8232 Avicennia marina HOM05D000283 ORTHO05D004861 7.3e-24 114.0 80 72.5
GSVIVG01032634001 Vitis vinifera HOM05D000283 ORTHO05D004861 7.3e-24 114.0 82 68.3
Actinidia29196 Actinidia chinensis HOM05D000283 ORTHO05D004861 9.5e-24 113.6 82 73.2
A04p04850 Brassica napus HOM05D000283 ORTHO05D004861 9.5e-24 113.6 89 64.0
BraA04t16198Z Brassica rapa HOM05D000283 ORTHO05D004861 9.5e-24 113.6 89 64.0
AUR62025543 Chenopodium quinoa HOM05D000283 ORTHO05D004861 1.2e-23 113.2 82 69.5
DCAR_019151 Daucus carota HOM05D000283 ORTHO05D004861 1.2e-23 113.2 82 69.5
DCAR_019154 Daucus carota HOM05D000283 ORTHO05D004861 1.2e-23 113.2 82 69.5
Glyma.10G292551 Glycine max HOM05D000283 ORTHO05D004861 1.2e-23 113.2 82 68.3
CARHR165090 Cardamine hirsuta HOM05D000283 ORTHO05D004861 1.6e-23 112.8 89 66.3
Ciclev10031660m.g Citrus clementina HOM05D000283 ORTHO05D004861 1.6e-23 112.8 84 67.9
MD07G1183500 Malus domestica HOM05D000283 ORTHO05D004861 1.6e-23 112.8 83 69.9
CSS0032920 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 2.1e-23 112.5 85 68.2
Cfa001563 Carpinus fangiana HOM05D000283 ORTHO05D004861 2.1e-23 112.5 82 72.0
Carub.0005s2170 Capsella rubella HOM05D000283 ORTHO05D004861 2.8e-23 112.1 89 64.0
Sp5g07350 Schrenkiella parvula HOM05D000283 ORTHO05D004861 3.6e-23 111.7 89 64.0
arahy.Tifrunner.gnm1.ann1.5B7TYX Arachis hypogaea HOM05D000283 ORTHO05D004861 4.7e-23 111.3 78 73.1
Thhalv10010415m.g Eutrema salsugineum HOM05D000283 ORTHO05D004861 4.7e-23 111.3 89 64.0
Glyma.20G242800 Glycine max HOM05D000283 ORTHO05D004861 6.2e-23 110.9 81 67.9
SalBow6G5798 Salvia bowleyana HOM05D000283 ORTHO05D004861 6.2e-23 110.9 82 67.1
BcaC02g09720 Brassica carinata HOM05D000283 ORTHO05D004861 8.1e-23 110.5 89 62.9
C04p37350 Brassica napus HOM05D000283 ORTHO05D004861 8.1e-23 110.5 89 62.9
BolC4t25299H Brassica oleracea HOM05D000283 ORTHO05D004861 8.1e-23 110.5 89 62.9
THA.LOC104809995 Tarenaya hassleriana HOM05D000283 ORTHO05D004861 8.1e-23 110.5 81 69.1
Psat6g239360 Pisum sativum HOM05D000283 ORTHO05D004861 1.1e-22 110.2 82 65.9
Hma1.2p1_0348F.1_g131730 Hydrangea macrophylla HOM05D000283 ORTHO05D004861 1.4e-22 109.8 89 65.2
A09p48090 Brassica napus HOM05D000283 ORTHO05D004861 1.8e-22 109.4 89 62.9
CANSAT56G1270 Cannabis sativa HOM05D000283 ORTHO05D004861 1.8e-22 109.4 86 64.0
VMungo0720G1844 Vigna mungo HOM05D000283 ORTHO05D004861 1.8e-22 109.4 82 68.3
BcaC07g39830 Brassica carinata HOM05D000283 ORTHO05D004861 2.4e-22 109.0 89 61.8
Phvul.007G007400 Phaseolus vulgaris HOM05D000283 ORTHO05D004861 3.1e-22 108.6 85 64.7
arahy.Tifrunner.gnm1.ann1.M3B011 Arachis hypogaea HOM05D000283 ORTHO05D004861 4.0e-22 108.2 77 72.7
BraA09t40263Z Brassica rapa HOM05D000283 ORTHO05D004861 4.0e-22 108.2 89 61.8
Rhsim09G0155700 Rhododendron simsii HOM05D000283 ORTHO05D004861 4.0e-22 108.2 82 69.5
Hund22437 Selenicereus undatus HOM05D000283 ORTHO05D004861 4.0e-22 108.2 80 68.8
FAN06G3181 Fragaria x ananassa HOM05D000283 ORTHO05D004861 5.2e-22 107.8 83 68.7
MBI05_g05301_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 5.2e-22 107.8 96 60.4
FvH4_7g20680 Fragaria vesca HOM05D000283 ORTHO05D004861 6.8e-22 107.5 83 68.7
FAN06G3682 Fragaria x ananassa HOM05D000283 ORTHO05D004861 6.8e-22 107.5 83 68.7
BolC8t50654H Brassica oleracea HOM05D000283 ORTHO05D004861 8.9e-22 107.1 89 60.7
Thecc.10G063500 Theobroma cacao HOM05D000283 ORTHO05D004861 8.9e-22 107.1 80 70.0
COL.COLO4_05799 Corchorus olitorius HOM05D000283 ORTHO05D004861 1.2e-21 106.7 81 69.1
HanXRQChr15g0496791 Helianthus annuus HOM05D000283 ORTHO05D004861 1.2e-21 106.7 84 64.3
TAR633G2156 Trochodendron aralioides HOM05D000283 ORTHO05D004861 1.5e-21 106.3 82 63.4
Eucgr.J01144 Eucalyptus grandis HOM05D000283 ORTHO05D004861 2.0e-21 105.9 82 64.6
Sc20g0002340 Simmondsia chinensis HOM05D000283 ORTHO05D004861 2.6e-21 105.5 81 65.4
TAR623G1321 Trochodendron aralioides HOM05D000283 ORTHO05D004861 2.6e-21 105.5 84 58.3
CiPaw.02G178300 Carya illinoinensis HOM05D000283 ORTHO05D004861 3.4e-21 105.1 86 60.5
ClCG02G013690 Citrullus lanatus HOM05D000283 ORTHO05D004861 5.8e-21 104.4 85 64.7
RcHm_v2.0_Chr1g0364711 Rosa chinensis HOM05D000283 ORTHO05D004861 5.8e-21 104.4 83 67.5
FAN10G1136 Fragaria x ananassa HOM05D000283 ORTHO05D004861 7.6e-21 104.0 91 63.7
C08p30310 Brassica napus HOM05D000283 ORTHO05D004861 9.9e-21 103.6 89 58.4
Migut.F01536 Erythranthe guttata HOM05D000283 ORTHO05D004861 9.9e-21 103.6 82 67.1
Sed0024713 Sechium edule HOM05D000283 ORTHO05D004861 9.9e-21 103.6 81 66.7
AL5G36190 Arabidopsis lyrata HOM05D000283 ORTHO05D004861 1.3e-20 103.2 85 60.0
MELO3C011710.2 Cucumis melo HOM05D000283 ORTHO05D004861 1.3e-20 103.2 85 64.7
Lalb_Chr21g0307121 Lupinus albus HOM05D000283 ORTHO05D004861 1.3e-20 103.2 76 65.8
FAN03G0565 Fragaria x ananassa HOM05D000283 ORTHO05D004861 1.7e-20 102.8 83 66.3
PSO384G1824 Papaver somniferum HOM05D000283 ORTHO05D004861 1.7e-20 102.8 84 61.9
PSO699G0010 Papaver somniferum HOM05D000283 ORTHO05D004861 1.7e-20 102.8 84 61.9
FAN01G0258 Fragaria x ananassa HOM05D000283 ORTHO05D004861 2.2e-20 102.4 83 65.1
FAN01G0780 Fragaria x ananassa HOM05D000283 ORTHO05D004861 2.2e-20 102.4 83 65.1
ATR0810G097 Amborella trichopoda HOM05D000283 ORTHO05D004861 2.9e-20 102.1 81 58.0
AT3G55070 Arabidopsis thaliana HOM05D000283 ORTHO05D004861 2.9e-20 102.1 84 59.5
BcaB01g00131 Brassica carinata HOM05D000283 ORTHO05D004861 2.9e-20 102.1 90 60.0
MBI02_g23397_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 2.9e-20 102.1 93 57.0
PGR044G2742 Punica granatum HOM05D000283 ORTHO05D004861 2.9e-20 102.1 76 69.7
CsaV3_5G006500 Cucumis sativus L. HOM05D000283 ORTHO05D004861 4.9e-20 101.3 85 63.5
Lalb_Chr02g0143841 Lupinus albus HOM05D000283 ORTHO05D004861 4.9e-20 101.3 80 63.8
ECA232G1460 Erigeron canadensis HOM05D000283 ORTHO05D004861 8.4e-20 100.5 80 65.0
BcaB04g19121 Brassica carinata HOM05D000283 ORTHO05D004861 1.9e-19 99.4 91 58.2
HPP92_016703 Vanilla planifolia HOM05D000283 ORTHO05D004861 1.9e-19 99.4 79 63.3
Atru.BG.269.p Acer truncatum HOM05D000283 ORTHO05D004861 4.1e-19 98.2 74 70.3
EL10Ac2g03514 Beta vulgaris HOM05D000283 ORTHO05D004861 7.1e-19 97.4 78 61.5
HanXRQChr09g0246601 Helianthus annuus HOM05D000283 ORTHO05D004861 7.1e-19 97.4 77 67.5
Aqoxy4G03100 Aquilegia oxysepala HOM05D000283 ORTHO05D004861 9.2e-19 97.1 82 57.3
CDE11G0382 Ceratophyllum demersum HOM05D000283 ORTHO05D004861 1.2e-18 96.7 84 53.6
SHI28210 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-18 96.7 84 60.7
Sed0007781 Sechium edule HOM05D000283 ORTHO05D004861 1.2e-18 96.7 81 65.4
Peaxi162Scf00135g00213 Petunia axillaris HOM05D000283 ORTHO05D004861 3.5e-18 95.1 73 69.9
unitig_0.g2403 Utricularia gibba HOM05D000283 ORTHO05D004861 3.5e-18 95.1 87 55.2
BcaB05g23770 Brassica carinata HOM05D000283 ORTHO05D004861 1.7e-17 92.8 91 56.0
Mapoly0093s0006 Marchantia polymorpha HOM05D000283 ORTHO05D004861 2.3e-17 92.4 73 58.9
Nitab4.5_0007221g0020 Nicotiana tabacum HOM05D000283 ORTHO05D004861 2.3e-17 92.4 83 62.7
CAN.G786.36 Capsicum annuum HOM05D000283 ORTHO05D004861 5.1e-17 91.3 74 67.6
Gohir.A05G343200 Gossypium hirsutum HOM05D000283 ORTHO05D004861 5.1e-17 91.3 67 68.7
SEGI_26055 Sequoiadendron giganteum HOM05D000283 ORTHO05D004861 8.7e-17 90.5 86 53.5
Pp3c8_20500 Physcomitrium patens HOM05D000283 ORTHO05D004861 4.3e-16 88.2 75 57.3
BcaB02g07699 Brassica carinata HOM05D000283 ORTHO05D004861 3.6e-15 85.1 76 55.3
Pp3c24_18980 Physcomitrium patens HOM05D000283 ORTHO05D004861 3.6e-15 85.1 75 53.3
SMO119G0426 Selaginella moellendorffii HOM05D000283 ORTHO05D004861 1.4e-14 83.2 76 51.3
AagrBONN_evm.TU.Sc2ySwM_228.2194 Anthoceros agrestis HOM05D000283 ORTHO05D004861 1.2e-13 80.1 84 45.2
Actinidia38228 Actinidia chinensis HOM05D000283 ORTHO05D004861 1.2e-10 70.1 62 54.8
Zm00001eb282460 Zea mays HOM05D000283 ORTHO05D004861 7.8e-10 67.4 81 44.4
SMO111G0010 Selaginella moellendorffii HOM05D000283 ORTHO05D004861 3.0e-09 65.5 78 39.7
Ah.10g033170 Amaranthus hybridus HOM05D000283 ORTHO05D004861 6.6e-09 64.3 80 41.2
Os05g0160100 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D004861 1.5e-08 63.2 84 41.7
BcaC08g44722 Brassica carinata HOM05D000283 ORTHO05D032771 5.6e-08 61.2 46 65.2
Nn2g10558 Nelumbo nucifera HOM05D000283 ORTHO05D004861 1.8e-06 56.2 64 46.9


User provided reference genes

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